RNA–Protein interactions for RNA: ENST00000430669.6

PTCH1-208, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 8,232 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-208ENST00000430669 NISCHQ9Y2I1 1504 aa21.69■■□□□ 1.06
PTCH1-208ENST00000430669 DCAF8L2P0C7V8 631 aa20.02■□□□□ 0.8
PTCH1-208ENST00000430669 SHROOM4Q9ULL8 1493 aa19.17■□□□□ 0.66
PTCH1-208ENST00000430669 SUPT5HO00267 1087 aaKnown RBP19.12■□□□□ 0.65
PTCH1-208ENST00000430669 CCDC180Q9P1Z9 1646 aa18.88■□□□□ 0.61
PTCH1-208ENST00000430669 APLP2Q06481 763 aa18.1■□□□□ 0.49
PTCH1-208ENST00000430669 ZCCHC6Q5VYS8 1495 aaKnown RBP18.09■□□□□ 0.49
PTCH1-208ENST00000430669 TRIM41Q8WV44 630 aa18.05■□□□□ 0.48
PTCH1-208ENST00000430669 FAM9AQ8IZU1 332 aaPredicted RBP18■□□□□ 0.47
PTCH1-208ENST00000430669 ABCC9O60706 1549 aa17.97■□□□□ 0.47
PTCH1-208ENST00000430669 EHMT2Q96KQ7 1210 aa17.86■□□□□ 0.45
PTCH1-208ENST00000430669 SCRIBQ14160 1630 aa17.83■□□□□ 0.44
PTCH1-208ENST00000430669 ZEB1P37275 1124 aaPredicted RBP17.75■□□□□ 0.43
PTCH1-208ENST00000430669 RB1CC1Q8TDY2 1594 aa17.73■□□□□ 0.43
PTCH1-208ENST00000430669 NACADO15069 1562 aa17.72■□□□□ 0.43
PTCH1-208ENST00000430669 DCAF1Q9Y4B6 1507 aa17.65■□□□□ 0.42
PTCH1-208ENST00000430669 PCGF6Q9BYE7 350 aa17.63■□□□□ 0.41
PTCH1-208ENST00000430669 UBTFP17480 764 aaKnown RBP17.62■□□□□ 0.41
PTCH1-208ENST00000430669 CHIC1Q5VXU3 224 aa17.51■□□□□ 0.39
PTCH1-208ENST00000430669 PELP1Q8IZL8 1130 aaKnown RBP17.47■□□□□ 0.39
PTCH1-208ENST00000430669 TRIM26Q12899 539 aaPredicted RBP17.41■□□□□ 0.38
PTCH1-208ENST00000430669 CCER1Q8TC90 406 aaPredicted RBP17.37■□□□□ 0.37
PTCH1-208ENST00000430669 RANGAP1P46060 587 aaPredicted RBP17.31■□□□□ 0.36
PTCH1-208ENST00000430669 TTBK1Q5TCY1 1321 aaPredicted RBP17.3■□□□□ 0.36
PTCH1-208ENST00000430669 PABPN1Q86U42 306 aaKnown RBP eCLIP17.28■□□□□ 0.36
PTCH1-208ENST00000430669 ATP1B4Q9UN42 357 aaPredicted RBP17.27■□□□□ 0.35
PTCH1-208ENST00000430669 MYO15BQ96JP2 1530 aa17.26■□□□□ 0.35
PTCH1-208ENST00000430669 BAZ1AQ9NRL2 1556 aaPredicted RBP17.14■□□□□ 0.33
PTCH1-208ENST00000430669 CENPBP07199 599 aaPredicted RBP17.13■□□□□ 0.33
PTCH1-208ENST00000430669 LOC105371045A0A1W2PR82 267 aa17.11■□□□□ 0.33
PTCH1-208ENST00000430669 HRCP23327 699 aa16.99■□□□□ 0.31
PTCH1-208ENST00000430669 RSF1Q96T23 1441 aaPredicted RBP16.95■□□□□ 0.3
PTCH1-208ENST00000430669 BAZ1BQ9UIG0 1483 aaKnown RBP16.9■□□□□ 0.3
PTCH1-208ENST00000430669 PPARGC1BQ86YN6 1023 aaKnown RBP16.88■□□□□ 0.29
PTCH1-208ENST00000430669 EEA1Q15075 1411 aa16.84■□□□□ 0.29
PTCH1-208ENST00000430669 SMARCA2P51531 1590 aa16.84■□□□□ 0.29
PTCH1-208ENST00000430669 CSRNP3Q8WYN3 585 aa16.79■□□□□ 0.28
PTCH1-208ENST00000430669 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.79■□□□□ 0.28
PTCH1-208ENST00000430669 HNRNPUL2Q1KMD3 747 aaKnown RBP16.79■□□□□ 0.28
PTCH1-208ENST00000430669 WIZO95785 1651 aa16.76■□□□□ 0.27
PTCH1-208ENST00000430669 SMARCA4P51532 1647 aa16.73■□□□□ 0.27
PTCH1-208ENST00000430669 TOP2AP11388 1531 aaKnown RBP16.7■□□□□ 0.26
PTCH1-208ENST00000430669 ITGAEP38570 1179 aa16.69■□□□□ 0.26
PTCH1-208ENST00000430669 NEFLP07196 543 aa16.66■□□□□ 0.26
PTCH1-208ENST00000430669 GOLGA3Q08378 1498 aa16.64■□□□□ 0.25
PTCH1-208ENST00000430669 MROH2BQ7Z745 1585 aa16.62■□□□□ 0.25
PTCH1-208ENST00000430669 FAM50AQ14320 339 aaKnown RBP16.6■□□□□ 0.25
PTCH1-208ENST00000430669 WRNQ14191 1432 aaPredicted RBP eCLIP16.6■□□□□ 0.25
PTCH1-208ENST00000430669 CECR2Q9BXF3 1484 aa16.58■□□□□ 0.24
PTCH1-208ENST00000430669 CEP164Q9UPV0 1460 aa16.55■□□□□ 0.24
PTCH1-208ENST00000430669 UNC13AQ9UPW8 1703 aa16.55■□□□□ 0.24
PTCH1-208ENST00000430669 MYT1LQ9UL68 1186 aa16.53■□□□□ 0.24
PTCH1-208ENST00000430669 KIF27Q86VH2 1401 aa16.5■□□□□ 0.23
PTCH1-208ENST00000430669 CDK11AQ9UQ88 783 aaPredicted RBP16.48■□□□□ 0.23
PTCH1-208ENST00000430669 CCDC88BA6NC98 1476 aa16.47■□□□□ 0.23
PTCH1-208ENST00000430669 CLIP1P30622 1438 aa16.46■□□□□ 0.23
PTCH1-208ENST00000430669 DIEXFQ68CQ4 756 aaKnown RBP16.44■□□□□ 0.22
PTCH1-208ENST00000430669 YTHDC1Q96MU7 727 aaKnown RBP16.44■□□□□ 0.22
PTCH1-208ENST00000430669 CEP162Q5TB80 1403 aa16.41■□□□□ 0.22
PTCH1-208ENST00000430669 FBLN2P98095 1184 aa16.39■□□□□ 0.22
PTCH1-208ENST00000430669 TNIKQ9UKE5 1360 aa16.38■□□□□ 0.21
PTCH1-208ENST00000430669 ERICH6Q7L0X2 663 aa16.37■□□□□ 0.21
PTCH1-208ENST00000430669 TRIM52Q96A61 297 aa16.37■□□□□ 0.21
PTCH1-208ENST00000430669 ACIN1Q9UKV3 1341 aaKnown RBP16.35■□□□□ 0.21
PTCH1-208ENST00000430669 ABCC8Q09428 1581 aa16.35■□□□□ 0.21
PTCH1-208ENST00000430669 ERCC6Q03468 1493 aa16.26■□□□□ 0.19
PTCH1-208ENST00000430669 P3H3Q8IVL6 736 aa16.26■□□□□ 0.19
PTCH1-208ENST00000430669 FHAD1B1AJZ9 1412 aa16.26■□□□□ 0.19
PTCH1-208ENST00000430669 ZNF316A6NFI3 1004 aaPredicted RBP16.25■□□□□ 0.19
PTCH1-208ENST00000430669 ATAD2BQ9ULI0 1458 aa16.24■□□□□ 0.19
PTCH1-208ENST00000430669 NEUROD1Q13562 356 aa16.23■□□□□ 0.19
PTCH1-208ENST00000430669 POLR3GLQ9BT43 218 aa16.23■□□□□ 0.19
PTCH1-208ENST00000430669 MTUS2Q5JR59 1369 aa16.22■□□□□ 0.19
PTCH1-208ENST00000430669 MYT1Q01538 1121 aa16.2■□□□□ 0.18
PTCH1-208ENST00000430669 PDS5BQ9NTI5 1447 aa16.2■□□□□ 0.18
PTCH1-208ENST00000430669 ANP32CO43423 234 aa16.18■□□□□ 0.18
PTCH1-208ENST00000430669 CHMP7Q8WUX9 453 aaPredicted RBP16.16■□□□□ 0.18
PTCH1-208ENST00000430669 CUX2O14529 1486 aa16.15■□□□□ 0.18
PTCH1-208ENST00000430669 EIF4G1Q04637 1599 aaKnown RBP16.15■□□□□ 0.18
PTCH1-208ENST00000430669 TONSLQ96HA7 1378 aa16.13■□□□□ 0.17
PTCH1-208ENST00000430669 SOGA1O94964 1423 aa16.08■□□□□ 0.16
PTCH1-208ENST00000430669 HMGXB3Q12766 1538 aa16.08■□□□□ 0.16
PTCH1-208ENST00000430669 CLSPNQ9HAW4 1339 aa16.07■□□□□ 0.16
PTCH1-208ENST00000430669 PRDM2Q13029 1718 aa16.07■□□□□ 0.16
PTCH1-208ENST00000430669 CARMIL1Q5VZK9 1371 aa16.06■□□□□ 0.16
PTCH1-208ENST00000430669 VPS8Q8N3P4 1428 aa16.06■□□□□ 0.16
PTCH1-208ENST00000430669 KIF21BO75037 1637 aa16.05■□□□□ 0.16
PTCH1-208ENST00000430669 ZNF777Q9ULD5 760 aaPredicted RBP16.03■□□□□ 0.16
PTCH1-208ENST00000430669 CADPSQ9ULU8 1353 aa16.03■□□□□ 0.16
PTCH1-208ENST00000430669 NPM1P06748 294 aaKnown RBP eCLIP16.01■□□□□ 0.15
PTCH1-208ENST00000430669 SLC4A1APQ9BWU0 796 aaKnown RBP16■□□□□ 0.15
PTCH1-208ENST00000430669 FMN1Q68DA7 1419 aa15.98■□□□□ 0.15
PTCH1-208ENST00000430669 ARID3CA6NKF2 412 aa15.98■□□□□ 0.15
PTCH1-208ENST00000430669 DAXXQ9UER7 740 aaPredicted RBP15.97■□□□□ 0.15
PTCH1-208ENST00000430669 ARHGAP35Q9NRY4 1499 aa15.96■□□□□ 0.15
PTCH1-208ENST00000430669 ZNF326Q5BKZ1 582 aaKnown RBP15.96■□□□□ 0.15
PTCH1-208ENST00000430669 NCAPD3P42695 1498 aa15.96■□□□□ 0.14
PTCH1-208ENST00000430669 RAPGEF2Q9Y4G8 1499 aa15.96■□□□□ 0.14
PTCH1-208ENST00000430669 TOP2BQ02880 1626 aa15.95■□□□□ 0.14
PTCH1-208ENST00000430669 TSPY4P0CV99 314 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms