RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 MT1MQ8N339 61 aa5.52□□□□□ -1.53
PHRF1-202ENST00000413872 SYNE1Q8NF91 8797 aaKnown RBP5.45□□□□□ -1.54
PHRF1-202ENST00000413872 MT3P25713 68 aa5.41□□□□□ -1.54
PHRF1-202ENST00000413872 KRTAP9-6A0A140TA67 174 aa5.39□□□□□ -1.55
PHRF1-202ENST00000413872 RNF213Q63HN8 5207 aa5.37□□□□□ -1.55
PHRF1-202ENST00000413872 UBR4Q5T4S7 5183 aa5.34□□□□□ -1.55
PHRF1-202ENST00000413872 FAT4Q6V0I7 4981 aa5.33□□□□□ -1.56
PHRF1-202ENST00000413872 FSIP2Q5CZC0 6907 aa5.33□□□□□ -1.56
PHRF1-202ENST00000413872 MT4P47944 62 aa5.29□□□□□ -1.56
PHRF1-202ENST00000413872 KRTAP19-7Q3SYF9 63 aa5.27□□□□□ -1.57
PHRF1-202ENST00000413872 LOC100996750A0A140TA64 210 aa5.21□□□□□ -1.58
PHRF1-202ENST00000413872 KRTAP4-3Q9BYR4 195 aa5.2□□□□□ -1.58
PHRF1-202ENST00000413872 MT1AP04731 61 aa5.17□□□□□ -1.58
PHRF1-202ENST00000413872 LCE1AQ5T7P2 110 aa5.16□□□□□ -1.58
PHRF1-202ENST00000413872 HMCN2Q8NDA2 5059 aa5.13□□□□□ -1.59
PHRF1-202ENST00000413872 KRTAP6-3Q3LI67 103 aa5.12□□□□□ -1.59
PHRF1-202ENST00000413872 KRTAP9-7A8MTY7 169 aa5.08□□□□□ -1.6
PHRF1-202ENST00000413872 KRTAP20-1Q3LI63 56 aa5.08□□□□□ -1.6
PHRF1-202ENST00000413872 MUC2Q02817 5179 aa5.05□□□□□ -1.6
PHRF1-202ENST00000413872 LCE1DQ5T752 114 aa5□□□□□ -1.61
PHRF1-202ENST00000413872 LCE1BQ5T7P3 118 aa4.98□□□□□ -1.61
PHRF1-202ENST00000413872 PRM1P04553 51 aa4.96□□□□□ -1.62
PHRF1-202ENST00000413872 KRTAP2-3P0C7H8 128 aa4.96□□□□□ -1.62
PHRF1-202ENST00000413872 KRTAP2-4Q9BYR9 128 aa4.96□□□□□ -1.62
PHRF1-202ENST00000413872 KRTAP2-1Q9BYU5 128 aa4.94□□□□□ -1.62
PHRF1-202ENST00000413872 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.92□□□□□ -1.62
PHRF1-202ENST00000413872 LCE5AQ5TCM9 118 aa4.88□□□□□ -1.63
PHRF1-202ENST00000413872 LCE4AQ5TA78 99 aa4.86□□□□□ -1.63
PHRF1-202ENST00000413872 SYNE2Q8WXH0 6885 aaKnown RBP4.86□□□□□ -1.63
PHRF1-202ENST00000413872 KRTAP4-9Q9BYQ8 210 aa4.86□□□□□ -1.63
PHRF1-202ENST00000413872 OBSCNQ5VST9 7968 aa4.84□□□□□ -1.63
PHRF1-202ENST00000413872 KRTAP2-2Q9BYT5 123 aa4.8□□□□□ -1.64
PHRF1-202ENST00000413872 KRTAP9-4Q9BYQ2 154 aa4.74□□□□□ -1.65
PHRF1-202ENST00000413872 KRTAP6-1Q3LI64 71 aa4.73□□□□□ -1.65
PHRF1-202ENST00000413872 KRTAP9-6A8MVA2 160 aa4.71□□□□□ -1.65
PHRF1-202ENST00000413872 KRTAP6-2Q3LI66 62 aa4.68□□□□□ -1.66
PHRF1-202ENST00000413872 FCGBPQ9Y6R7 5405 aaPredicted RBP4.6□□□□□ -1.67
PHRF1-202ENST00000413872 USH2AO75445 5202 aa4.56□□□□□ -1.68
PHRF1-202ENST00000413872 DSTQ03001 7570 aaKnown RBP4.46□□□□□ -1.69
PHRF1-202ENST00000413872 KRTAP5-9P26371 169 aa4.4□□□□□ -1.7
PHRF1-202ENST00000413872 KMT2DO14686 5537 aa4.32□□□□□ -1.72
PHRF1-202ENST00000413872 MACF1Q9UPN3 7388 aaKnown RBP4.27□□□□□ -1.73
PHRF1-202ENST00000413872 LCE1CQ5T751 118 aa4.23□□□□□ -1.73
PHRF1-202ENST00000413872 LCE1EQ5T753 118 aa4.23□□□□□ -1.73
PHRF1-202ENST00000413872 LCE1FQ5T754 118 aa4.23□□□□□ -1.73
PHRF1-202ENST00000413872 NEBP20929 6669 aa4.2□□□□□ -1.74
PHRF1-202ENST00000413872 SSPOA2VEC9 5147 aa4.17□□□□□ -1.74
PHRF1-202ENST00000413872 KRTAP9-9Q9BYP9 154 aa4.15□□□□□ -1.75
PHRF1-202ENST00000413872 MUC12Q9UKN1 5478 aa4.07□□□□□ -1.76
PHRF1-202ENST00000413872 KRTAP20-2Q3LI61 65 aa4.03□□□□□ -1.76
PHRF1-202ENST00000413872 KRTAP4-6Q9BYQ5 205 aa3.99□□□□□ -1.77
PHRF1-202ENST00000413872 MDN1Q9NU22 5596 aa3.95□□□□□ -1.78
PHRF1-202ENST00000413872 MUC19Q7Z5P9 8384 aa3.92□□□□□ -1.78
PHRF1-202ENST00000413872 KRTAP5-4Q6L8H1 288 aa3.82□□□□□ -1.8
PHRF1-202ENST00000413872 GPR98Q8WXG9 6306 aa3.81□□□□□ -1.8
PHRF1-202ENST00000413872 KRTAP4-11Q9BYQ6 195 aa3.7□□□□□ -1.82
PHRF1-202ENST00000413872 KRTAP5-5Q701N2 237 aaPredicted RBP3.59□□□□□ -1.83
PHRF1-202ENST00000413872 KRTAP4-4Q9BYR3 166 aa3.46□□□□□ -1.86
PHRF1-202ENST00000413872 KRTAP4-12Q9BQ66 201 aa3.41□□□□□ -1.86
PHRF1-202ENST00000413872 KRTAP4-2Q9BYR5 136 aa3.41□□□□□ -1.86
PHRF1-202ENST00000413872 KRTAP5-3Q6L8H2 238 aa3.35□□□□□ -1.87
PHRF1-202ENST00000413872 MUC5ACP98088 5654 aa3.3□□□□□ -1.88
PHRF1-202ENST00000413872 AHNAK2Q8IVF2 5795 aa3.23□□□□□ -1.89
PHRF1-202ENST00000413872 HMCN1Q96RW7 5635 aa3.16□□□□□ -1.9
PHRF1-202ENST00000413872 KRTAP5-2Q701N4 177 aa3.02□□□□□ -1.93
PHRF1-202ENST00000413872 KRTAP5-8O75690 187 aa3.02□□□□□ -1.93
PHRF1-202ENST00000413872 KRTAP5-10Q6L8G5 202 aa2.83□□□□□ -1.96
PHRF1-202ENST00000413872 MUC5BQ9HC84 5762 aaPredicted RBP2.72□□□□□ -1.97
PHRF1-202ENST00000413872 KRTAP5-11Q6L8G4 156 aa2.72□□□□□ -1.97
PHRF1-202ENST00000413872 PHGR1C9JFL3 82 aa2.66□□□□□ -1.98
PHRF1-202ENST00000413872 AHNAKQ09666 5890 aaKnown RBP2.63□□□□□ -1.99
PHRF1-202ENST00000413872 KRTAP5-1Q6L8H4 278 aa2.61□□□□□ -1.99
PHRF1-202ENST00000413872 KRTAP21-2Q3LI59 83 aa2.46□□□□□ -2.01
PHRF1-202ENST00000413872 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.43□□□□□ -2.02
PHRF1-202ENST00000413872 KRTAP5-7Q6L8G8 165 aa2.34□□□□□ -2.04
PHRF1-202ENST00000413872 KRTAP21-1Q3LI58 79 aa2.11□□□□□ -2.07
PHRF1-202ENST00000413872 MUC16Q8WXI7 14507 aa1.59□□□□□ -2.15
Retrieved 77 of 20,778 RNA–protein pairs in 5.8 ms