RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 LCE5AQ5TCM9 118 aa3.57□□□□□ -1.84
COL6A3-206ENST00000409809 MUC17Q685J3 4493 aa3.54□□□□□ -1.84
COL6A3-206ENST00000409809 LOC100996750A0A140TA64 210 aa3.53□□□□□ -1.84
COL6A3-206ENST00000409809 HERC2O95714 4834 aa3.52□□□□□ -1.85
COL6A3-206ENST00000409809 KRTAP6-2Q3LI66 62 aa3.51□□□□□ -1.85
COL6A3-206ENST00000409809 LCE2AQ5TA79 106 aaPredicted RBP3.5□□□□□ -1.85
COL6A3-206ENST00000409809 KRTAP9-2Q9BYQ4 174 aa3.5□□□□□ -1.85
COL6A3-206ENST00000409809 KRTAP19-7Q3SYF9 63 aa3.48□□□□□ -1.85
COL6A3-206ENST00000409809 KMT2CQ8NEZ4 4911 aaKnown RBP3.47□□□□□ -1.85
COL6A3-206ENST00000409809 KRTAP4-3Q9BYR4 195 aa3.43□□□□□ -1.86
COL6A3-206ENST00000409809 KRTAP20-1Q3LI63 56 aa3.42□□□□□ -1.86
COL6A3-206ENST00000409809 LCE1CQ5T751 118 aa3.41□□□□□ -1.86
COL6A3-206ENST00000409809 LCE1EQ5T753 118 aa3.41□□□□□ -1.86
COL6A3-206ENST00000409809 LCE1FQ5T754 118 aa3.41□□□□□ -1.86
COL6A3-206ENST00000409809 LCE4AQ5TA78 99 aa3.4□□□□□ -1.87
COL6A3-206ENST00000409809 HERC1Q15751 4861 aa3.39□□□□□ -1.87
COL6A3-206ENST00000409809 HYDINQ4G0P3 5121 aa3.38□□□□□ -1.87
COL6A3-206ENST00000409809 LPAP08519 4548 aa3.38□□□□□ -1.87
COL6A3-206ENST00000409809 KRTAP6-3Q3LI67 103 aa3.37□□□□□ -1.87
COL6A3-206ENST00000409809 EPPK1P58107 5090 aaKnown RBP3.37□□□□□ -1.87
COL6A3-206ENST00000409809 KRTAP2-2Q9BYT5 123 aa3.35□□□□□ -1.87
COL6A3-206ENST00000409809 KRTAP9-6A0A140TA67 174 aa3.33□□□□□ -1.88
COL6A3-206ENST00000409809 KRTAP4-9Q9BYQ8 210 aa3.32□□□□□ -1.88
COL6A3-206ENST00000409809 BIRC6Q9NR09 4857 aa3.31□□□□□ -1.88
COL6A3-206ENST00000409809 KRTAP9-4Q9BYQ2 154 aa3.31□□□□□ -1.88
COL6A3-206ENST00000409809 KRTAP9-6A8MVA2 160 aa3.26□□□□□ -1.89
COL6A3-206ENST00000409809 SYNE1Q8NF91 8797 aaKnown RBP3.25□□□□□ -1.89
COL6A3-206ENST00000409809 KRTAP9-7A8MTY7 169 aa3.22□□□□□ -1.89
COL6A3-206ENST00000409809 KRTAP6-1Q3LI64 71 aa3.22□□□□□ -1.89
COL6A3-206ENST00000409809 RNF213Q63HN8 5207 aa3.21□□□□□ -1.9
COL6A3-206ENST00000409809 SYNE2Q8WXH0 6885 aaKnown RBP3.16□□□□□ -1.9
COL6A3-206ENST00000409809 ABCA13Q86UQ4 5058 aa3.06□□□□□ -1.92
COL6A3-206ENST00000409809 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.06□□□□□ -1.92
COL6A3-206ENST00000409809 HMCN2Q8NDA2 5059 aa3.04□□□□□ -1.92
COL6A3-206ENST00000409809 UBR4Q5T4S7 5183 aa3.02□□□□□ -1.93
COL6A3-206ENST00000409809 KRTAP9-9Q9BYP9 154 aa2.94□□□□□ -1.94
COL6A3-206ENST00000409809 KRTAP5-9P26371 169 aa2.94□□□□□ -1.94
COL6A3-206ENST00000409809 FAT4Q6V0I7 4981 aa2.92□□□□□ -1.94
COL6A3-206ENST00000409809 MUC2Q02817 5179 aa2.92□□□□□ -1.94
COL6A3-206ENST00000409809 FSIP2Q5CZC0 6907 aa2.79□□□□□ -1.96
COL6A3-206ENST00000409809 KRTAP4-11Q9BYQ6 195 aa2.78□□□□□ -1.96
COL6A3-206ENST00000409809 KRTAP20-2Q3LI61 65 aa2.77□□□□□ -1.97
COL6A3-206ENST00000409809 MDN1Q9NU22 5596 aa2.66□□□□□ -1.98
COL6A3-206ENST00000409809 NEBP20929 6669 aa2.65□□□□□ -1.99
COL6A3-206ENST00000409809 KRTAP4-4Q9BYR3 166 aa2.6□□□□□ -1.99
COL6A3-206ENST00000409809 KRTAP5-4Q6L8H1 288 aa2.6□□□□□ -1.99
COL6A3-206ENST00000409809 OBSCNQ5VST9 7968 aa2.59□□□□□ -1.99
COL6A3-206ENST00000409809 KRTAP5-5Q701N2 237 aaPredicted RBP2.59□□□□□ -1.99
COL6A3-206ENST00000409809 KRTAP4-6Q9BYQ5 205 aa2.59□□□□□ -2
COL6A3-206ENST00000409809 KRTAP4-12Q9BQ66 201 aa2.56□□□□□ -2
COL6A3-206ENST00000409809 KRTAP4-2Q9BYR5 136 aa2.56□□□□□ -2
COL6A3-206ENST00000409809 USH2AO75445 5202 aa2.5□□□□□ -2.01
COL6A3-206ENST00000409809 SSPOA2VEC9 5147 aa2.49□□□□□ -2.01
COL6A3-206ENST00000409809 FCGBPQ9Y6R7 5405 aaPredicted RBP2.46□□□□□ -2.02
COL6A3-206ENST00000409809 GPR98Q8WXG9 6306 aa2.46□□□□□ -2.02
COL6A3-206ENST00000409809 DSTQ03001 7570 aaKnown RBP2.43□□□□□ -2.02
COL6A3-206ENST00000409809 MACF1Q9UPN3 7388 aaKnown RBP2.42□□□□□ -2.02
COL6A3-206ENST00000409809 MUC12Q9UKN1 5478 aa2.33□□□□□ -2.04
COL6A3-206ENST00000409809 KMT2DO14686 5537 aa2.33□□□□□ -2.04
COL6A3-206ENST00000409809 KRTAP5-3Q6L8H2 238 aa2.28□□□□□ -2.04
COL6A3-206ENST00000409809 MUC5ACP98088 5654 aa2.24□□□□□ -2.05
COL6A3-206ENST00000409809 AHNAK2Q8IVF2 5795 aa2.17□□□□□ -2.06
COL6A3-206ENST00000409809 MUC19Q7Z5P9 8384 aa2.12□□□□□ -2.07
COL6A3-206ENST00000409809 KRTAP5-10Q6L8G5 202 aa2.1□□□□□ -2.07
COL6A3-206ENST00000409809 KRTAP5-2Q701N4 177 aa2.04□□□□□ -2.08
COL6A3-206ENST00000409809 HMCN1Q96RW7 5635 aa2.02□□□□□ -2.09
COL6A3-206ENST00000409809 MUC5BQ9HC84 5762 aaPredicted RBP2□□□□□ -2.09
COL6A3-206ENST00000409809 PHGR1C9JFL3 82 aa1.98□□□□□ -2.09
COL6A3-206ENST00000409809 KRTAP5-11Q6L8G4 156 aa1.93□□□□□ -2.1
COL6A3-206ENST00000409809 KRTAP5-8O75690 187 aa1.88□□□□□ -2.11
COL6A3-206ENST00000409809 AHNAKQ09666 5890 aaKnown RBP1.85□□□□□ -2.11
COL6A3-206ENST00000409809 KRTAP21-1Q3LI58 79 aa1.85□□□□□ -2.11
COL6A3-206ENST00000409809 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.8□□□□□ -2.12
COL6A3-206ENST00000409809 KRTAP5-1Q6L8H4 278 aa1.68□□□□□ -2.14
COL6A3-206ENST00000409809 KRTAP21-2Q3LI59 83 aa1.65□□□□□ -2.15
COL6A3-206ENST00000409809 KRTAP5-7Q6L8G8 165 aa1.54□□□□□ -2.16
COL6A3-206ENST00000409809 MUC16Q8WXI7 14507 aa1.15□□□□□ -2.22
Retrieved 77 of 20,778 RNA–protein pairs in 99 ms