RNA–Protein interactions for RNA: ENST00000409402.8

SPIRE1-202, Transcript of spire type actin nucleation factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SPIRE1, Length 5,665 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIRE1-202ENST00000409402 MUC17Q685J3 4493 aa7.83□□□□□ -1.16
SPIRE1-202ENST00000409402 KRTAP9-6A0A140TA67 174 aa7.78□□□□□ -1.16
SPIRE1-202ENST00000409402 ABCA13Q86UQ4 5058 aa7.77□□□□□ -1.17
SPIRE1-202ENST00000409402 LCE2AQ5TA79 106 aaPredicted RBP7.75□□□□□ -1.17
SPIRE1-202ENST00000409402 LOC100996750A0A140TA64 210 aa7.63□□□□□ -1.19
SPIRE1-202ENST00000409402 KRTAP4-3Q9BYR4 195 aa7.6□□□□□ -1.19
SPIRE1-202ENST00000409402 LCE1BQ5T7P3 118 aa7.48□□□□□ -1.21
SPIRE1-202ENST00000409402 RNF213Q63HN8 5207 aa7.47□□□□□ -1.21
SPIRE1-202ENST00000409402 LCE1DQ5T752 114 aa7.46□□□□□ -1.21
SPIRE1-202ENST00000409402 FAT4Q6V0I7 4981 aa7.46□□□□□ -1.22
SPIRE1-202ENST00000409402 KRTAP19-7Q3SYF9 63 aa7.44□□□□□ -1.22
SPIRE1-202ENST00000409402 KRTAP20-1Q3LI63 56 aa7.43□□□□□ -1.22
SPIRE1-202ENST00000409402 MT1AP04731 61 aa7.39□□□□□ -1.23
SPIRE1-202ENST00000409402 UBR4Q5T4S7 5183 aa7.34□□□□□ -1.23
SPIRE1-202ENST00000409402 PRM1P04553 51 aa7.33□□□□□ -1.24
SPIRE1-202ENST00000409402 KRTAP9-7A8MTY7 169 aa7.32□□□□□ -1.24
SPIRE1-202ENST00000409402 KRTAP6-3Q3LI67 103 aa7.27□□□□□ -1.25
SPIRE1-202ENST00000409402 FSIP2Q5CZC0 6907 aa7.24□□□□□ -1.25
SPIRE1-202ENST00000409402 LCE1AQ5T7P2 110 aa7.22□□□□□ -1.25
SPIRE1-202ENST00000409402 HMCN2Q8NDA2 5059 aa7.2□□□□□ -1.26
SPIRE1-202ENST00000409402 KRTAP2-3P0C7H8 128 aa7.13□□□□□ -1.27
SPIRE1-202ENST00000409402 KRTAP2-4Q9BYR9 128 aa7.13□□□□□ -1.27
SPIRE1-202ENST00000409402 KRTAP2-1Q9BYU5 128 aa7.13□□□□□ -1.27
SPIRE1-202ENST00000409402 SYNE1Q8NF91 8797 aaKnown RBP7.09□□□□□ -1.27
SPIRE1-202ENST00000409402 SYNE2Q8WXH0 6885 aaKnown RBP7.09□□□□□ -1.27
SPIRE1-202ENST00000409402 LCE5AQ5TCM9 118 aa7.06□□□□□ -1.28
SPIRE1-202ENST00000409402 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.04□□□□□ -1.28
SPIRE1-202ENST00000409402 MUC2Q02817 5179 aa7.01□□□□□ -1.29
SPIRE1-202ENST00000409402 KRTAP4-9Q9BYQ8 210 aa6.99□□□□□ -1.29
SPIRE1-202ENST00000409402 LCE4AQ5TA78 99 aa6.94□□□□□ -1.3
SPIRE1-202ENST00000409402 KRTAP2-2Q9BYT5 123 aa6.88□□□□□ -1.31
SPIRE1-202ENST00000409402 KRTAP6-1Q3LI64 71 aa6.85□□□□□ -1.31
SPIRE1-202ENST00000409402 KRTAP6-2Q3LI66 62 aa6.84□□□□□ -1.31
SPIRE1-202ENST00000409402 KRTAP9-4Q9BYQ2 154 aa6.83□□□□□ -1.32
SPIRE1-202ENST00000409402 KRTAP9-6A8MVA2 160 aa6.6□□□□□ -1.35
SPIRE1-202ENST00000409402 OBSCNQ5VST9 7968 aa6.58□□□□□ -1.36
SPIRE1-202ENST00000409402 LCE1CQ5T751 118 aa6.43□□□□□ -1.38
SPIRE1-202ENST00000409402 LCE1EQ5T753 118 aa6.43□□□□□ -1.38
SPIRE1-202ENST00000409402 LCE1FQ5T754 118 aa6.43□□□□□ -1.38
SPIRE1-202ENST00000409402 USH2AO75445 5202 aa6.15□□□□□ -1.42
SPIRE1-202ENST00000409402 KRTAP9-9Q9BYP9 154 aa6.1□□□□□ -1.43
SPIRE1-202ENST00000409402 KRTAP5-9P26371 169 aa6.07□□□□□ -1.44
SPIRE1-202ENST00000409402 NEBP20929 6669 aa6□□□□□ -1.45
SPIRE1-202ENST00000409402 FCGBPQ9Y6R7 5405 aaPredicted RBP5.92□□□□□ -1.46
SPIRE1-202ENST00000409402 MACF1Q9UPN3 7388 aaKnown RBP5.88□□□□□ -1.47
SPIRE1-202ENST00000409402 DSTQ03001 7570 aaKnown RBP5.85□□□□□ -1.47
SPIRE1-202ENST00000409402 SSPOA2VEC9 5147 aa5.8□□□□□ -1.48
SPIRE1-202ENST00000409402 KRTAP4-6Q9BYQ5 205 aa5.79□□□□□ -1.48
SPIRE1-202ENST00000409402 KRTAP20-2Q3LI61 65 aa5.74□□□□□ -1.49
SPIRE1-202ENST00000409402 KMT2DO14686 5537 aa5.64□□□□□ -1.51
SPIRE1-202ENST00000409402 GPR98Q8WXG9 6306 aa5.45□□□□□ -1.54
SPIRE1-202ENST00000409402 KRTAP5-4Q6L8H1 288 aa5.39□□□□□ -1.55
SPIRE1-202ENST00000409402 KRTAP4-11Q9BYQ6 195 aa5.39□□□□□ -1.55
SPIRE1-202ENST00000409402 MDN1Q9NU22 5596 aa5.36□□□□□ -1.55
SPIRE1-202ENST00000409402 MUC12Q9UKN1 5478 aa5.3□□□□□ -1.56
SPIRE1-202ENST00000409402 KRTAP4-12Q9BQ66 201 aa5.16□□□□□ -1.58
SPIRE1-202ENST00000409402 KRTAP4-2Q9BYR5 136 aa5.16□□□□□ -1.58
SPIRE1-202ENST00000409402 KRTAP4-4Q9BYR3 166 aa5.13□□□□□ -1.59
SPIRE1-202ENST00000409402 MUC19Q7Z5P9 8384 aa5.11□□□□□ -1.59
SPIRE1-202ENST00000409402 KRTAP5-5Q701N2 237 aaPredicted RBP4.94□□□□□ -1.62
SPIRE1-202ENST00000409402 KRTAP5-3Q6L8H2 238 aa4.72□□□□□ -1.65
SPIRE1-202ENST00000409402 MUC5ACP98088 5654 aa4.48□□□□□ -1.69
SPIRE1-202ENST00000409402 AHNAK2Q8IVF2 5795 aa4.41□□□□□ -1.7
SPIRE1-202ENST00000409402 KRTAP5-8O75690 187 aa4.32□□□□□ -1.72
SPIRE1-202ENST00000409402 HMCN1Q96RW7 5635 aa4.22□□□□□ -1.73
SPIRE1-202ENST00000409402 KRTAP5-2Q701N4 177 aa4.08□□□□□ -1.76
SPIRE1-202ENST00000409402 PHGR1C9JFL3 82 aa3.99□□□□□ -1.77
SPIRE1-202ENST00000409402 KRTAP5-10Q6L8G5 202 aa3.97□□□□□ -1.77
SPIRE1-202ENST00000409402 MUC5BQ9HC84 5762 aaPredicted RBP3.85□□□□□ -1.79
SPIRE1-202ENST00000409402 KRTAP5-11Q6L8G4 156 aa3.73□□□□□ -1.81
SPIRE1-202ENST00000409402 AHNAKQ09666 5890 aaKnown RBP3.67□□□□□ -1.82
SPIRE1-202ENST00000409402 KRTAP5-1Q6L8H4 278 aa3.59□□□□□ -1.84
SPIRE1-202ENST00000409402 KRTAP21-2Q3LI59 83 aa3.43□□□□□ -1.86
SPIRE1-202ENST00000409402 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.22□□□□□ -1.89
SPIRE1-202ENST00000409402 KRTAP5-7Q6L8G8 165 aa3.19□□□□□ -1.9
SPIRE1-202ENST00000409402 KRTAP21-1Q3LI58 79 aa2.96□□□□□ -1.94
SPIRE1-202ENST00000409402 MUC16Q8WXI7 14507 aa2.29□□□□□ -2.04
Retrieved 77 of 20,778 RNA–protein pairs in 72 ms