RNA–Protein interactions for RNA: ENST00000400337.6

COL18A1-204, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL18A1, Length 5,436 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-204ENST00000400337 FAT4Q6V0I7 4981 aa5.77□□□□□ -1.49
COL18A1-204ENST00000400337 MT1MQ8N339 61 aa5.75□□□□□ -1.49
COL18A1-204ENST00000400337 UBR4Q5T4S7 5183 aa5.75□□□□□ -1.49
COL18A1-204ENST00000400337 FSIP2Q5CZC0 6907 aa5.74□□□□□ -1.49
COL18A1-204ENST00000400337 RNF213Q63HN8 5207 aa5.72□□□□□ -1.49
COL18A1-204ENST00000400337 SYNE1Q8NF91 8797 aaKnown RBP5.68□□□□□ -1.5
COL18A1-204ENST00000400337 LOC100996750A0A140TA64 210 aa5.66□□□□□ -1.5
COL18A1-204ENST00000400337 LCE2AQ5TA79 106 aaPredicted RBP5.65□□□□□ -1.51
COL18A1-204ENST00000400337 KRTAP4-3Q9BYR4 195 aa5.65□□□□□ -1.51
COL18A1-204ENST00000400337 HMCN2Q8NDA2 5059 aa5.63□□□□□ -1.51
COL18A1-204ENST00000400337 KRTAP19-7Q3SYF9 63 aa5.55□□□□□ -1.52
COL18A1-204ENST00000400337 MT3P25713 68 aa5.54□□□□□ -1.52
COL18A1-204ENST00000400337 MT4P47944 62 aa5.53□□□□□ -1.52
COL18A1-204ENST00000400337 KRTAP20-1Q3LI63 56 aa5.53□□□□□ -1.52
COL18A1-204ENST00000400337 KRTAP9-7A8MTY7 169 aa5.5□□□□□ -1.53
COL18A1-204ENST00000400337 MUC2Q02817 5179 aa5.47□□□□□ -1.53
COL18A1-204ENST00000400337 PRM1P04553 51 aa5.4□□□□□ -1.55
COL18A1-204ENST00000400337 KRTAP6-3Q3LI67 103 aa5.4□□□□□ -1.55
COL18A1-204ENST00000400337 MT1AP04731 61 aa5.31□□□□□ -1.56
COL18A1-204ENST00000400337 KRTAP2-3P0C7H8 128 aa5.3□□□□□ -1.56
COL18A1-204ENST00000400337 KRTAP2-4Q9BYR9 128 aa5.3□□□□□ -1.56
COL18A1-204ENST00000400337 LCE1BQ5T7P3 118 aa5.27□□□□□ -1.57
COL18A1-204ENST00000400337 LCE1DQ5T752 114 aa5.27□□□□□ -1.57
COL18A1-204ENST00000400337 LCE1AQ5T7P2 110 aa5.26□□□□□ -1.57
COL18A1-204ENST00000400337 KRTAP4-9Q9BYQ8 210 aa5.25□□□□□ -1.57
COL18A1-204ENST00000400337 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.24□□□□□ -1.57
COL18A1-204ENST00000400337 SYNE2Q8WXH0 6885 aaKnown RBP5.22□□□□□ -1.57
COL18A1-204ENST00000400337 KRTAP2-1Q9BYU5 128 aa5.22□□□□□ -1.57
COL18A1-204ENST00000400337 OBSCNQ5VST9 7968 aa5.11□□□□□ -1.59
COL18A1-204ENST00000400337 KRTAP9-6A8MVA2 160 aa5.11□□□□□ -1.59
COL18A1-204ENST00000400337 KRTAP2-2Q9BYT5 123 aa5.1□□□□□ -1.59
COL18A1-204ENST00000400337 LCE4AQ5TA78 99 aa5.05□□□□□ -1.6
COL18A1-204ENST00000400337 KRTAP6-1Q3LI64 71 aa5.04□□□□□ -1.6
COL18A1-204ENST00000400337 LCE5AQ5TCM9 118 aa5.02□□□□□ -1.61
COL18A1-204ENST00000400337 KRTAP6-2Q3LI66 62 aa4.95□□□□□ -1.62
COL18A1-204ENST00000400337 USH2AO75445 5202 aa4.91□□□□□ -1.62
COL18A1-204ENST00000400337 FCGBPQ9Y6R7 5405 aaPredicted RBP4.91□□□□□ -1.62
COL18A1-204ENST00000400337 KRTAP9-4Q9BYQ2 154 aa4.9□□□□□ -1.63
COL18A1-204ENST00000400337 DSTQ03001 7570 aaKnown RBP4.71□□□□□ -1.66
COL18A1-204ENST00000400337 KMT2DO14686 5537 aa4.7□□□□□ -1.66
COL18A1-204ENST00000400337 MACF1Q9UPN3 7388 aaKnown RBP4.5□□□□□ -1.69
COL18A1-204ENST00000400337 KRTAP5-9P26371 169 aa4.45□□□□□ -1.7
COL18A1-204ENST00000400337 LCE1CQ5T751 118 aa4.44□□□□□ -1.7
COL18A1-204ENST00000400337 LCE1EQ5T753 118 aa4.44□□□□□ -1.7
COL18A1-204ENST00000400337 LCE1FQ5T754 118 aa4.44□□□□□ -1.7
COL18A1-204ENST00000400337 NEBP20929 6669 aa4.44□□□□□ -1.7
COL18A1-204ENST00000400337 KRTAP9-9Q9BYP9 154 aa4.44□□□□□ -1.7
COL18A1-204ENST00000400337 SSPOA2VEC9 5147 aa4.43□□□□□ -1.7
COL18A1-204ENST00000400337 MUC12Q9UKN1 5478 aa4.4□□□□□ -1.71
COL18A1-204ENST00000400337 MDN1Q9NU22 5596 aa4.22□□□□□ -1.73
COL18A1-204ENST00000400337 KRTAP4-6Q9BYQ5 205 aa4.21□□□□□ -1.74
COL18A1-204ENST00000400337 GPR98Q8WXG9 6306 aa4.15□□□□□ -1.75
COL18A1-204ENST00000400337 KRTAP20-2Q3LI61 65 aa4.11□□□□□ -1.75
COL18A1-204ENST00000400337 MUC19Q7Z5P9 8384 aa4.06□□□□□ -1.76
COL18A1-204ENST00000400337 KRTAP4-11Q9BYQ6 195 aa4□□□□□ -1.77
COL18A1-204ENST00000400337 KRTAP5-4Q6L8H1 288 aa3.92□□□□□ -1.78
COL18A1-204ENST00000400337 KRTAP5-5Q701N2 237 aaPredicted RBP3.75□□□□□ -1.81
COL18A1-204ENST00000400337 KRTAP4-4Q9BYR3 166 aa3.74□□□□□ -1.81
COL18A1-204ENST00000400337 KRTAP4-12Q9BQ66 201 aa3.69□□□□□ -1.82
COL18A1-204ENST00000400337 KRTAP4-2Q9BYR5 136 aa3.69□□□□□ -1.82
COL18A1-204ENST00000400337 MUC5ACP98088 5654 aa3.54□□□□□ -1.84
COL18A1-204ENST00000400337 KRTAP5-3Q6L8H2 238 aa3.52□□□□□ -1.85
COL18A1-204ENST00000400337 AHNAK2Q8IVF2 5795 aa3.46□□□□□ -1.86
COL18A1-204ENST00000400337 HMCN1Q96RW7 5635 aa3.38□□□□□ -1.87
COL18A1-204ENST00000400337 KRTAP5-8O75690 187 aa3.13□□□□□ -1.91
COL18A1-204ENST00000400337 KRTAP5-2Q701N4 177 aa3.02□□□□□ -1.93
COL18A1-204ENST00000400337 KRTAP5-10Q6L8G5 202 aa3.02□□□□□ -1.93
COL18A1-204ENST00000400337 PHGR1C9JFL3 82 aa2.91□□□□□ -1.94
COL18A1-204ENST00000400337 MUC5BQ9HC84 5762 aaPredicted RBP2.82□□□□□ -1.96
COL18A1-204ENST00000400337 AHNAKQ09666 5890 aaKnown RBP2.81□□□□□ -1.96
COL18A1-204ENST00000400337 KRTAP5-11Q6L8G4 156 aa2.69□□□□□ -1.98
COL18A1-204ENST00000400337 KRTAP5-1Q6L8H4 278 aa2.68□□□□□ -1.98
COL18A1-204ENST00000400337 KRTAP5-7Q6L8G8 165 aa2.6□□□□□ -1.99
COL18A1-204ENST00000400337 KRTAP21-2Q3LI59 83 aa2.6□□□□□ -1.99
COL18A1-204ENST00000400337 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.38□□□□□ -2.03
COL18A1-204ENST00000400337 KRTAP21-1Q3LI58 79 aa2.3□□□□□ -2.04
COL18A1-204ENST00000400337 MUC16Q8WXI7 14507 aa1.63□□□□□ -2.15
Retrieved 77 of 20,778 RNA–protein pairs in 58.1 ms