RNA–Protein interactions for RNA: ENST00000399002.6

SPTLC3-201, Transcript of serine palmitoyltransferase long chain base subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC3, Length 6,169 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC3-201ENST00000399002 ABCA13Q86UQ4 5058 aa2.48□□□□□ -2.01
SPTLC3-201ENST00000399002 KRTAP2-3P0C7H8 128 aa2.47□□□□□ -2.01
SPTLC3-201ENST00000399002 KRTAP2-4Q9BYR9 128 aa2.47□□□□□ -2.01
SPTLC3-201ENST00000399002 KRTAP2-1Q9BYU5 128 aa2.47□□□□□ -2.01
SPTLC3-201ENST00000399002 PCLOQ9Y6V0 5065 aa2.44□□□□□ -2.02
SPTLC3-201ENST00000399002 MT4P47944 62 aa2.41□□□□□ -2.02
SPTLC3-201ENST00000399002 LOC100996750A0A140TA64 210 aa2.41□□□□□ -2.02
SPTLC3-201ENST00000399002 KRTAP19-7Q3SYF9 63 aa2.4□□□□□ -2.02
SPTLC3-201ENST00000399002 LCE1AQ5T7P2 110 aa2.37□□□□□ -2.03
SPTLC3-201ENST00000399002 KRTAP9-2Q9BYQ4 174 aa2.36□□□□□ -2.03
SPTLC3-201ENST00000399002 LPAP08519 4548 aa2.35□□□□□ -2.03
SPTLC3-201ENST00000399002 LCE1DQ5T752 114 aa2.34□□□□□ -2.03
SPTLC3-201ENST00000399002 KRTAP4-3Q9BYR4 195 aa2.34□□□□□ -2.03
SPTLC3-201ENST00000399002 LCE1BQ5T7P3 118 aa2.34□□□□□ -2.03
SPTLC3-201ENST00000399002 HMCN2Q8NDA2 5059 aa2.32□□□□□ -2.04
SPTLC3-201ENST00000399002 KRTAP9-4Q9BYQ2 154 aa2.31□□□□□ -2.04
SPTLC3-201ENST00000399002 LCE4AQ5TA78 99 aa2.31□□□□□ -2.04
SPTLC3-201ENST00000399002 KRTAP6-3Q3LI67 103 aa2.29□□□□□ -2.04
SPTLC3-201ENST00000399002 KRTAP20-1Q3LI63 56 aa2.28□□□□□ -2.04
SPTLC3-201ENST00000399002 KRTAP9-9Q9BYP9 154 aa2.28□□□□□ -2.04
SPTLC3-201ENST00000399002 KRTAP9-6A0A140TA67 174 aa2.26□□□□□ -2.05
SPTLC3-201ENST00000399002 LCE5AQ5TCM9 118 aa2.24□□□□□ -2.05
SPTLC3-201ENST00000399002 KRTAP6-2Q3LI66 62 aa2.23□□□□□ -2.05
SPTLC3-201ENST00000399002 KRTAP6-1Q3LI64 71 aa2.22□□□□□ -2.05
SPTLC3-201ENST00000399002 UBR4Q5T4S7 5183 aa2.2□□□□□ -2.06
SPTLC3-201ENST00000399002 MUC2Q02817 5179 aa2.2□□□□□ -2.06
SPTLC3-201ENST00000399002 KRTAP4-9Q9BYQ8 210 aa2.19□□□□□ -2.06
SPTLC3-201ENST00000399002 RNF213Q63HN8 5207 aa2.16□□□□□ -2.06
SPTLC3-201ENST00000399002 KRTAP4-6Q9BYQ5 205 aa2.15□□□□□ -2.07
SPTLC3-201ENST00000399002 KRTAP9-6A8MVA2 160 aa2.14□□□□□ -2.07
SPTLC3-201ENST00000399002 KRTAP2-2Q9BYT5 123 aa2.13□□□□□ -2.07
SPTLC3-201ENST00000399002 KRTAP9-7A8MTY7 169 aa2.11□□□□□ -2.07
SPTLC3-201ENST00000399002 FAT4Q6V0I7 4981 aa2.11□□□□□ -2.07
SPTLC3-201ENST00000399002 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.07□□□□□ -2.08
SPTLC3-201ENST00000399002 LCE1CQ5T751 118 aa2.02□□□□□ -2.09
SPTLC3-201ENST00000399002 LCE1EQ5T753 118 aa2.02□□□□□ -2.09
SPTLC3-201ENST00000399002 LCE1FQ5T754 118 aa2.02□□□□□ -2.09
SPTLC3-201ENST00000399002 KRTAP4-12Q9BQ66 201 aa1.99□□□□□ -2.09
SPTLC3-201ENST00000399002 KRTAP5-9P26371 169 aa1.93□□□□□ -2.1
SPTLC3-201ENST00000399002 USH2AO75445 5202 aa1.83□□□□□ -2.12
SPTLC3-201ENST00000399002 SYNE2Q8WXH0 6885 aaKnown RBP1.82□□□□□ -2.12
SPTLC3-201ENST00000399002 KRTAP20-2Q3LI61 65 aa1.82□□□□□ -2.12
SPTLC3-201ENST00000399002 FSIP2Q5CZC0 6907 aa1.81□□□□□ -2.12
SPTLC3-201ENST00000399002 KRTAP5-4Q6L8H1 288 aa1.8□□□□□ -2.12
SPTLC3-201ENST00000399002 SSPOA2VEC9 5147 aa1.8□□□□□ -2.12
SPTLC3-201ENST00000399002 KRTAP4-11Q9BYQ6 195 aa1.78□□□□□ -2.13
SPTLC3-201ENST00000399002 FCGBPQ9Y6R7 5405 aaPredicted RBP1.73□□□□□ -2.13
SPTLC3-201ENST00000399002 NEBP20929 6669 aa1.7□□□□□ -2.14
SPTLC3-201ENST00000399002 KRTAP5-5Q701N2 237 aaPredicted RBP1.68□□□□□ -2.14
SPTLC3-201ENST00000399002 KMT2DO14686 5537 aa1.65□□□□□ -2.15
SPTLC3-201ENST00000399002 MACF1Q9UPN3 7388 aaKnown RBP1.65□□□□□ -2.15
SPTLC3-201ENST00000399002 OBSCNQ5VST9 7968 aa1.6□□□□□ -2.15
SPTLC3-201ENST00000399002 SYNE1Q8NF91 8797 aaKnown RBP1.59□□□□□ -2.15
SPTLC3-201ENST00000399002 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.59□□□□□ -2.16
SPTLC3-201ENST00000399002 KRTAP4-2Q9BYR5 136 aa1.59□□□□□ -2.16
SPTLC3-201ENST00000399002 MUC12Q9UKN1 5478 aa1.55□□□□□ -2.16
SPTLC3-201ENST00000399002 KRTAP5-3Q6L8H2 238 aa1.54□□□□□ -2.16
SPTLC3-201ENST00000399002 KRTAP4-4Q9BYR3 166 aa1.53□□□□□ -2.16
SPTLC3-201ENST00000399002 MDN1Q9NU22 5596 aa1.53□□□□□ -2.16
SPTLC3-201ENST00000399002 KRTAP5-2Q701N4 177 aa1.48□□□□□ -2.17
SPTLC3-201ENST00000399002 DSTQ03001 7570 aaKnown RBP1.4□□□□□ -2.19
SPTLC3-201ENST00000399002 MUC19Q7Z5P9 8384 aa1.36□□□□□ -2.19
SPTLC3-201ENST00000399002 KRTAP5-10Q6L8G5 202 aa1.35□□□□□ -2.19
SPTLC3-201ENST00000399002 MUC5ACP98088 5654 aa1.35□□□□□ -2.19
SPTLC3-201ENST00000399002 GPR98Q8WXG9 6306 aa1.33□□□□□ -2.2
SPTLC3-201ENST00000399002 KRTAP5-8O75690 187 aa1.26□□□□□ -2.21
SPTLC3-201ENST00000399002 KRTAP5-11Q6L8G4 156 aa1.26□□□□□ -2.21
SPTLC3-201ENST00000399002 HMCN1Q96RW7 5635 aa1.23□□□□□ -2.21
SPTLC3-201ENST00000399002 AHNAK2Q8IVF2 5795 aa1.23□□□□□ -2.21
SPTLC3-201ENST00000399002 PHGR1C9JFL3 82 aa1.19□□□□□ -2.22
SPTLC3-201ENST00000399002 KRTAP5-1Q6L8H4 278 aa1.17□□□□□ -2.22
SPTLC3-201ENST00000399002 MUC5BQ9HC84 5762 aaPredicted RBP1.16□□□□□ -2.22
SPTLC3-201ENST00000399002 KRTAP21-1Q3LI58 79 aa1.15□□□□□ -2.23
SPTLC3-201ENST00000399002 KRTAP21-2Q3LI59 83 aa1.13□□□□□ -2.23
SPTLC3-201ENST00000399002 KRTAP5-7Q6L8G8 165 aa1.02□□□□□ -2.25
SPTLC3-201ENST00000399002 AHNAKQ09666 5890 aaKnown RBP0.98□□□□□ -2.25
SPTLC3-201ENST00000399002 MUC16Q8WXI7 14507 aa0.81□□□□□ -2.28
Retrieved 77 of 20,778 RNA–protein pairs in 6.2 ms