RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 MUC17Q685J3 4493 aa3.62□□□□□ -1.83
USP49-203ENST00000394253 KRTAP4-9Q9BYQ8 210 aa3.57□□□□□ -1.84
USP49-203ENST00000394253 SYNE2Q8WXH0 6885 aaKnown RBP3.55□□□□□ -1.84
USP49-203ENST00000394253 HERC1Q15751 4861 aa3.54□□□□□ -1.84
USP49-203ENST00000394253 KRTAP4-3Q9BYR4 195 aa3.53□□□□□ -1.84
USP49-203ENST00000394253 KRTAP19-6Q3LI70 58 aa3.51□□□□□ -1.85
USP49-203ENST00000394253 KMT2CQ8NEZ4 4911 aaKnown RBP3.5□□□□□ -1.85
USP49-203ENST00000394253 LPAP08519 4548 aa3.48□□□□□ -1.85
USP49-203ENST00000394253 DNHD1Q96M86 4753 aa3.44□□□□□ -1.86
USP49-203ENST00000394253 LRP2P98164 4655 aa3.44□□□□□ -1.86
USP49-203ENST00000394253 LCE4AQ5TA78 99 aa3.44□□□□□ -1.86
USP49-203ENST00000394253 KRTAP2-2Q9BYT5 123 aa3.42□□□□□ -1.86
USP49-203ENST00000394253 KRTAP17-1Q9BYP8 105 aa3.41□□□□□ -1.86
USP49-203ENST00000394253 RYR3Q15413 4870 aa3.4□□□□□ -1.87
USP49-203ENST00000394253 KRTAP9-2Q9BYQ4 174 aa3.39□□□□□ -1.87
USP49-203ENST00000394253 KRTAP19-7Q3SYF9 63 aa3.37□□□□□ -1.87
USP49-203ENST00000394253 KRTAP9-4Q9BYQ2 154 aa3.37□□□□□ -1.87
USP49-203ENST00000394253 KRTAP9-7A8MTY7 169 aa3.36□□□□□ -1.87
USP49-203ENST00000394253 KRTAP20-1Q3LI63 56 aa3.35□□□□□ -1.87
USP49-203ENST00000394253 KRTAP6-1Q3LI64 71 aa3.33□□□□□ -1.88
USP49-203ENST00000394253 HYDINQ4G0P3 5121 aa3.29□□□□□ -1.88
USP49-203ENST00000394253 ABCA13Q86UQ4 5058 aa3.27□□□□□ -1.89
USP49-203ENST00000394253 HERC2O95714 4834 aa3.24□□□□□ -1.89
USP49-203ENST00000394253 KRTAP19-2Q3LHN2 52 aa3.22□□□□□ -1.89
USP49-203ENST00000394253 SYNE1Q8NF91 8797 aaKnown RBP3.19□□□□□ -1.9
USP49-203ENST00000394253 KRTAP9-9Q9BYP9 154 aa3.19□□□□□ -1.9
USP49-203ENST00000394253 KRTAP9-6A8MVA2 160 aa3.14□□□□□ -1.91
USP49-203ENST00000394253 KIAA1109Q2LD37 5005 aa3.12□□□□□ -1.91
USP49-203ENST00000394253 KRTAP4-11Q9BYQ6 195 aa3.07□□□□□ -1.92
USP49-203ENST00000394253 LCE2AQ5TA79 106 aaPredicted RBP3.06□□□□□ -1.92
USP49-203ENST00000394253 KRTAP9-6A0A140TA67 174 aa3.02□□□□□ -1.93
USP49-203ENST00000394253 KRTAP6-3Q3LI67 103 aa3.01□□□□□ -1.93
USP49-203ENST00000394253 RNF213Q63HN8 5207 aa2.98□□□□□ -1.93
USP49-203ENST00000394253 EPPK1P58107 5090 aaKnown RBP2.98□□□□□ -1.93
USP49-203ENST00000394253 HMCN2Q8NDA2 5059 aa2.95□□□□□ -1.94
USP49-203ENST00000394253 KRTAP20-2Q3LI61 65 aa2.88□□□□□ -1.95
USP49-203ENST00000394253 FSIP2Q5CZC0 6907 aa2.88□□□□□ -1.95
USP49-203ENST00000394253 USH2AO75445 5202 aa2.87□□□□□ -1.95
USP49-203ENST00000394253 UBR4Q5T4S7 5183 aa2.87□□□□□ -1.95
USP49-203ENST00000394253 FAT4Q6V0I7 4981 aa2.84□□□□□ -1.96
USP49-203ENST00000394253 MUC2Q02817 5179 aa2.76□□□□□ -1.97
USP49-203ENST00000394253 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.74□□□□□ -1.97
USP49-203ENST00000394253 KRTAP4-4Q9BYR3 166 aa2.64□□□□□ -1.99
USP49-203ENST00000394253 OBSCNQ5VST9 7968 aa2.62□□□□□ -1.99
USP49-203ENST00000394253 GPR98Q8WXG9 6306 aa2.57□□□□□ -2
USP49-203ENST00000394253 DSTQ03001 7570 aaKnown RBP2.53□□□□□ -2
USP49-203ENST00000394253 SSPOA2VEC9 5147 aa2.52□□□□□ -2.01
USP49-203ENST00000394253 NEBP20929 6669 aa2.52□□□□□ -2.01
USP49-203ENST00000394253 KMT2DO14686 5537 aa2.5□□□□□ -2.01
USP49-203ENST00000394253 KRTAP4-6Q9BYQ5 205 aa2.49□□□□□ -2.01
USP49-203ENST00000394253 MDN1Q9NU22 5596 aa2.48□□□□□ -2.01
USP49-203ENST00000394253 FCGBPQ9Y6R7 5405 aaPredicted RBP2.48□□□□□ -2.01
USP49-203ENST00000394253 KRTAP4-12Q9BQ66 201 aa2.45□□□□□ -2.02
USP49-203ENST00000394253 KRTAP4-2Q9BYR5 136 aa2.45□□□□□ -2.02
USP49-203ENST00000394253 KRTAP5-5Q701N2 237 aaPredicted RBP2.42□□□□□ -2.02
USP49-203ENST00000394253 MACF1Q9UPN3 7388 aaKnown RBP2.4□□□□□ -2.03
USP49-203ENST00000394253 KRTAP5-9P26371 169 aa2.36□□□□□ -2.03
USP49-203ENST00000394253 KRTAP5-4Q6L8H1 288 aa2.36□□□□□ -2.03
USP49-203ENST00000394253 MUC19Q7Z5P9 8384 aa2.32□□□□□ -2.04
USP49-203ENST00000394253 AHNAK2Q8IVF2 5795 aa2.28□□□□□ -2.04
USP49-203ENST00000394253 HMCN1Q96RW7 5635 aa2.22□□□□□ -2.05
USP49-203ENST00000394253 AHNAKQ09666 5890 aaKnown RBP2.18□□□□□ -2.06
USP49-203ENST00000394253 MUC12Q9UKN1 5478 aa2.18□□□□□ -2.06
USP49-203ENST00000394253 MUC5BQ9HC84 5762 aaPredicted RBP2.1□□□□□ -2.07
USP49-203ENST00000394253 KRTAP5-3Q6L8H2 238 aa2.03□□□□□ -2.08
USP49-203ENST00000394253 MUC5ACP98088 5654 aa2.03□□□□□ -2.08
USP49-203ENST00000394253 KRTAP5-10Q6L8G5 202 aa1.96□□□□□ -2.1
USP49-203ENST00000394253 PHGR1C9JFL3 82 aa1.95□□□□□ -2.1
USP49-203ENST00000394253 KRTAP5-2Q701N4 177 aa1.85□□□□□ -2.11
USP49-203ENST00000394253 KRTAP21-1Q3LI58 79 aa1.78□□□□□ -2.12
USP49-203ENST00000394253 KRTAP5-8O75690 187 aa1.68□□□□□ -2.14
USP49-203ENST00000394253 KRTAP5-11Q6L8G4 156 aa1.68□□□□□ -2.14
USP49-203ENST00000394253 KRTAP5-1Q6L8H4 278 aa1.64□□□□□ -2.15
USP49-203ENST00000394253 KRTAP21-2Q3LI59 83 aa1.5□□□□□ -2.17
USP49-203ENST00000394253 KRTAP5-7Q6L8G8 165 aa1.43□□□□□ -2.18
USP49-203ENST00000394253 MUC16Q8WXI7 14507 aa1.37□□□□□ -2.19
USP49-203ENST00000394253 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.36□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 12.2 ms