RNA–Protein interactions for RNA: ENST00000392959.5

LCA5-202, Transcript of LCA5, lebercilin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LCA5, Length 4,719 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LCA5-202ENST00000392959 MT3P25713 68 aa4□□□□□ -1.77
LCA5-202ENST00000392959 PRM1P04553 51 aa3.98□□□□□ -1.77
LCA5-202ENST00000392959 KRTAP19-6Q3LI70 58 aa3.97□□□□□ -1.77
LCA5-202ENST00000392959 KRTAP4-3Q9BYR4 195 aa3.97□□□□□ -1.77
LCA5-202ENST00000392959 FSIP2Q5CZC0 6907 aa3.96□□□□□ -1.77
LCA5-202ENST00000392959 LCE2DQ5TA82 110 aaPredicted RBP3.96□□□□□ -1.78
LCA5-202ENST00000392959 KRTAP19-7Q3SYF9 63 aa3.95□□□□□ -1.78
LCA5-202ENST00000392959 RNF213Q63HN8 5207 aa3.91□□□□□ -1.78
LCA5-202ENST00000392959 OBSCNQ5VST9 7968 aa3.91□□□□□ -1.78
LCA5-202ENST00000392959 FAT4Q6V0I7 4981 aa3.9□□□□□ -1.79
LCA5-202ENST00000392959 HMCN2Q8NDA2 5059 aa3.89□□□□□ -1.79
LCA5-202ENST00000392959 KRTAP2-3P0C7H8 128 aa3.85□□□□□ -1.79
LCA5-202ENST00000392959 KRTAP2-4Q9BYR9 128 aa3.85□□□□□ -1.79
LCA5-202ENST00000392959 KRTAP2-1Q9BYU5 128 aa3.85□□□□□ -1.79
LCA5-202ENST00000392959 MUC2Q02817 5179 aa3.85□□□□□ -1.79
LCA5-202ENST00000392959 MT4P47944 62 aa3.82□□□□□ -1.8
LCA5-202ENST00000392959 MT1AP04731 61 aa3.82□□□□□ -1.8
LCA5-202ENST00000392959 LCE2AQ5TA79 106 aaPredicted RBP3.79□□□□□ -1.8
LCA5-202ENST00000392959 KRTAP4-9Q9BYQ8 210 aa3.77□□□□□ -1.81
LCA5-202ENST00000392959 LCE1BQ5T7P3 118 aa3.76□□□□□ -1.81
LCA5-202ENST00000392959 LCE1DQ5T752 114 aa3.75□□□□□ -1.81
LCA5-202ENST00000392959 KRTAP9-2Q9BYQ4 174 aa3.71□□□□□ -1.82
LCA5-202ENST00000392959 KRTAP9-6A8MVA2 160 aa3.7□□□□□ -1.82
LCA5-202ENST00000392959 SYNE2Q8WXH0 6885 aaKnown RBP3.64□□□□□ -1.83
LCA5-202ENST00000392959 FCGBPQ9Y6R7 5405 aaPredicted RBP3.59□□□□□ -1.83
LCA5-202ENST00000392959 KRTAP6-1Q3LI64 71 aa3.58□□□□□ -1.84
LCA5-202ENST00000392959 LCE1AQ5T7P2 110 aa3.55□□□□□ -1.84
LCA5-202ENST00000392959 LCE5AQ5TCM9 118 aa3.52□□□□□ -1.85
LCA5-202ENST00000392959 KRTAP6-2Q3LI66 62 aa3.52□□□□□ -1.85
LCA5-202ENST00000392959 USH2AO75445 5202 aa3.52□□□□□ -1.85
LCA5-202ENST00000392959 DSTQ03001 7570 aaKnown RBP3.49□□□□□ -1.85
LCA5-202ENST00000392959 KRTAP9-4Q9BYQ2 154 aa3.48□□□□□ -1.85
LCA5-202ENST00000392959 KRTAP9-6A0A140TA67 174 aa3.42□□□□□ -1.86
LCA5-202ENST00000392959 KRTAP9-7A8MTY7 169 aa3.41□□□□□ -1.86
LCA5-202ENST00000392959 KRTAP6-3Q3LI67 103 aa3.37□□□□□ -1.87
LCA5-202ENST00000392959 MACF1Q9UPN3 7388 aaKnown RBP3.36□□□□□ -1.87
LCA5-202ENST00000392959 KRTAP20-1Q3LI63 56 aa3.31□□□□□ -1.88
LCA5-202ENST00000392959 LCE4AQ5TA78 99 aa3.31□□□□□ -1.88
LCA5-202ENST00000392959 MUC19Q7Z5P9 8384 aa3.24□□□□□ -1.89
LCA5-202ENST00000392959 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.22□□□□□ -1.89
LCA5-202ENST00000392959 KRTAP2-2Q9BYT5 123 aa3.2□□□□□ -1.9
LCA5-202ENST00000392959 KMT2DO14686 5537 aa3.2□□□□□ -1.9
LCA5-202ENST00000392959 LCE1CQ5T751 118 aa3.13□□□□□ -1.91
LCA5-202ENST00000392959 LCE1EQ5T753 118 aa3.13□□□□□ -1.91
LCA5-202ENST00000392959 LCE1FQ5T754 118 aa3.13□□□□□ -1.91
LCA5-202ENST00000392959 MUC12Q9UKN1 5478 aa3.06□□□□□ -1.92
LCA5-202ENST00000392959 MDN1Q9NU22 5596 aa3.03□□□□□ -1.92
LCA5-202ENST00000392959 SSPOA2VEC9 5147 aa3.01□□□□□ -1.93
LCA5-202ENST00000392959 KRTAP5-9P26371 169 aa2.95□□□□□ -1.94
LCA5-202ENST00000392959 KRTAP4-11Q9BYQ6 195 aa2.93□□□□□ -1.94
LCA5-202ENST00000392959 NEBP20929 6669 aa2.92□□□□□ -1.94
LCA5-202ENST00000392959 KRTAP4-6Q9BYQ5 205 aa2.87□□□□□ -1.95
LCA5-202ENST00000392959 KRTAP9-9Q9BYP9 154 aa2.83□□□□□ -1.96
LCA5-202ENST00000392959 KRTAP20-2Q3LI61 65 aa2.83□□□□□ -1.96
LCA5-202ENST00000392959 GPR98Q8WXG9 6306 aa2.81□□□□□ -1.96
LCA5-202ENST00000392959 KRTAP5-5Q701N2 237 aaPredicted RBP2.75□□□□□ -1.97
LCA5-202ENST00000392959 KRTAP4-4Q9BYR3 166 aa2.64□□□□□ -1.99
LCA5-202ENST00000392959 KRTAP5-4Q6L8H1 288 aa2.56□□□□□ -2
LCA5-202ENST00000392959 KRTAP4-12Q9BQ66 201 aa2.56□□□□□ -2
LCA5-202ENST00000392959 KRTAP4-2Q9BYR5 136 aa2.56□□□□□ -2
LCA5-202ENST00000392959 MUC5ACP98088 5654 aa2.55□□□□□ -2
LCA5-202ENST00000392959 HMCN1Q96RW7 5635 aa2.48□□□□□ -2.01
LCA5-202ENST00000392959 AHNAK2Q8IVF2 5795 aa2.33□□□□□ -2.04
LCA5-202ENST00000392959 KRTAP5-3Q6L8H2 238 aa2.26□□□□□ -2.05
LCA5-202ENST00000392959 KRTAP5-10Q6L8G5 202 aa2.19□□□□□ -2.06
LCA5-202ENST00000392959 KRTAP5-8O75690 187 aa2.07□□□□□ -2.08
LCA5-202ENST00000392959 KRTAP5-2Q701N4 177 aa2.07□□□□□ -2.08
LCA5-202ENST00000392959 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.97□□□□□ -2.09
LCA5-202ENST00000392959 MUC5BQ9HC84 5762 aaPredicted RBP1.97□□□□□ -2.09
LCA5-202ENST00000392959 AHNAKQ09666 5890 aaKnown RBP1.94□□□□□ -2.1
LCA5-202ENST00000392959 KRTAP5-11Q6L8G4 156 aa1.9□□□□□ -2.11
LCA5-202ENST00000392959 KRTAP5-1Q6L8H4 278 aa1.89□□□□□ -2.11
LCA5-202ENST00000392959 KRTAP21-2Q3LI59 83 aa1.83□□□□□ -2.12
LCA5-202ENST00000392959 PHGR1C9JFL3 82 aa1.81□□□□□ -2.12
LCA5-202ENST00000392959 KRTAP21-1Q3LI58 79 aa1.72□□□□□ -2.13
LCA5-202ENST00000392959 KRTAP5-7Q6L8G8 165 aa1.45□□□□□ -2.18
LCA5-202ENST00000392959 MUC16Q8WXI7 14507 aa1.15□□□□□ -2.23
Retrieved 77 of 20,778 RNA–protein pairs in 44.7 ms