RNA–Protein interactions for RNA: ENST00000380285.7

SNX1-202, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 8,119 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-202ENST00000380285 KRTAP19-7Q3SYF9 63 aa2.77□□□□□ -1.97
SNX1-202ENST00000380285 LCE1DQ5T752 114 aa2.77□□□□□ -1.97
SNX1-202ENST00000380285 KIAA1109Q2LD37 5005 aa2.76□□□□□ -1.97
SNX1-202ENST00000380285 KMT2CQ8NEZ4 4911 aaKnown RBP2.75□□□□□ -1.97
SNX1-202ENST00000380285 LOC100996750A0A140TA64 210 aa2.74□□□□□ -1.97
SNX1-202ENST00000380285 HERC2O95714 4834 aa2.74□□□□□ -1.97
SNX1-202ENST00000380285 LPAP08519 4548 aa2.73□□□□□ -1.97
SNX1-202ENST00000380285 OBSCNQ5VST9 7968 aa2.73□□□□□ -1.97
SNX1-202ENST00000380285 PCLOQ9Y6V0 5065 aa2.67□□□□□ -1.98
SNX1-202ENST00000380285 KRTAP4-3Q9BYR4 195 aa2.67□□□□□ -1.98
SNX1-202ENST00000380285 SYNE1Q8NF91 8797 aaKnown RBP2.65□□□□□ -1.98
SNX1-202ENST00000380285 MUC2Q02817 5179 aa2.65□□□□□ -1.99
SNX1-202ENST00000380285 LCE1AQ5T7P2 110 aa2.63□□□□□ -1.99
SNX1-202ENST00000380285 LCE5AQ5TCM9 118 aa2.62□□□□□ -1.99
SNX1-202ENST00000380285 BIRC6Q9NR09 4857 aa2.6□□□□□ -1.99
SNX1-202ENST00000380285 LCE2AQ5TA79 106 aaPredicted RBP2.59□□□□□ -2
SNX1-202ENST00000380285 KRTAP6-2Q3LI66 62 aa2.57□□□□□ -2
SNX1-202ENST00000380285 KRTAP9-4Q9BYQ2 154 aa2.56□□□□□ -2
SNX1-202ENST00000380285 KRTAP4-9Q9BYQ8 210 aa2.55□□□□□ -2
SNX1-202ENST00000380285 EPPK1P58107 5090 aaKnown RBP2.55□□□□□ -2
SNX1-202ENST00000380285 KRTAP9-6A8MVA2 160 aa2.55□□□□□ -2
SNX1-202ENST00000380285 RNF213Q63HN8 5207 aa2.54□□□□□ -2
SNX1-202ENST00000380285 KRTAP6-1Q3LI64 71 aa2.52□□□□□ -2.01
SNX1-202ENST00000380285 KRTAP9-2Q9BYQ4 174 aa2.51□□□□□ -2.01
SNX1-202ENST00000380285 LCE4AQ5TA78 99 aa2.5□□□□□ -2.01
SNX1-202ENST00000380285 SYNE2Q8WXH0 6885 aaKnown RBP2.49□□□□□ -2.01
SNX1-202ENST00000380285 HMCN2Q8NDA2 5059 aa2.49□□□□□ -2.01
SNX1-202ENST00000380285 LCE1CQ5T751 118 aa2.48□□□□□ -2.01
SNX1-202ENST00000380285 LCE1EQ5T753 118 aa2.48□□□□□ -2.01
SNX1-202ENST00000380285 LCE1FQ5T754 118 aa2.48□□□□□ -2.01
SNX1-202ENST00000380285 ABCA13Q86UQ4 5058 aa2.46□□□□□ -2.02
SNX1-202ENST00000380285 FAT4Q6V0I7 4981 aa2.43□□□□□ -2.02
SNX1-202ENST00000380285 KRTAP6-3Q3LI67 103 aa2.43□□□□□ -2.02
SNX1-202ENST00000380285 KRTAP20-1Q3LI63 56 aa2.4□□□□□ -2.03
SNX1-202ENST00000380285 KRTAP9-7A8MTY7 169 aa2.4□□□□□ -2.03
SNX1-202ENST00000380285 UBR4Q5T4S7 5183 aa2.39□□□□□ -2.03
SNX1-202ENST00000380285 KRTAP2-2Q9BYT5 123 aa2.37□□□□□ -2.03
SNX1-202ENST00000380285 DSTQ03001 7570 aaKnown RBP2.35□□□□□ -2.03
SNX1-202ENST00000380285 KMT2DO14686 5537 aa2.34□□□□□ -2.04
SNX1-202ENST00000380285 KRTAP9-6A0A140TA67 174 aa2.33□□□□□ -2.04
SNX1-202ENST00000380285 FSIP2Q5CZC0 6907 aa2.31□□□□□ -2.04
SNX1-202ENST00000380285 FCGBPQ9Y6R7 5405 aaPredicted RBP2.28□□□□□ -2.04
SNX1-202ENST00000380285 USH2AO75445 5202 aa2.24□□□□□ -2.05
SNX1-202ENST00000380285 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.2□□□□□ -2.06
SNX1-202ENST00000380285 KRTAP9-9Q9BYP9 154 aa2.17□□□□□ -2.06
SNX1-202ENST00000380285 KRTAP5-9P26371 169 aa2.12□□□□□ -2.07
SNX1-202ENST00000380285 KRTAP4-11Q9BYQ6 195 aa2.1□□□□□ -2.07
SNX1-202ENST00000380285 MUC12Q9UKN1 5478 aa2.04□□□□□ -2.08
SNX1-202ENST00000380285 KRTAP20-2Q3LI61 65 aa2□□□□□ -2.09
SNX1-202ENST00000380285 KRTAP5-5Q701N2 237 aaPredicted RBP1.97□□□□□ -2.09
SNX1-202ENST00000380285 MUC19Q7Z5P9 8384 aa1.95□□□□□ -2.1
SNX1-202ENST00000380285 SSPOA2VEC9 5147 aa1.93□□□□□ -2.1
SNX1-202ENST00000380285 KRTAP4-6Q9BYQ5 205 aa1.92□□□□□ -2.1
SNX1-202ENST00000380285 KRTAP5-4Q6L8H1 288 aa1.92□□□□□ -2.1
SNX1-202ENST00000380285 KRTAP4-4Q9BYR3 166 aa1.88□□□□□ -2.11
SNX1-202ENST00000380285 MACF1Q9UPN3 7388 aaKnown RBP1.87□□□□□ -2.11
SNX1-202ENST00000380285 NEBP20929 6669 aa1.84□□□□□ -2.11
SNX1-202ENST00000380285 MDN1Q9NU22 5596 aa1.8□□□□□ -2.12
SNX1-202ENST00000380285 KRTAP4-12Q9BQ66 201 aa1.79□□□□□ -2.12
SNX1-202ENST00000380285 KRTAP4-2Q9BYR5 136 aa1.79□□□□□ -2.12
SNX1-202ENST00000380285 MUC5BQ9HC84 5762 aaPredicted RBP1.77□□□□□ -2.13
SNX1-202ENST00000380285 KRTAP5-3Q6L8H2 238 aa1.66□□□□□ -2.14
SNX1-202ENST00000380285 KRTAP5-10Q6L8G5 202 aa1.59□□□□□ -2.15
SNX1-202ENST00000380285 HMCN1Q96RW7 5635 aa1.58□□□□□ -2.16
SNX1-202ENST00000380285 MUC5ACP98088 5654 aa1.54□□□□□ -2.16
SNX1-202ENST00000380285 KRTAP5-2Q701N4 177 aa1.51□□□□□ -2.17
SNX1-202ENST00000380285 GPR98Q8WXG9 6306 aa1.46□□□□□ -2.17
SNX1-202ENST00000380285 KRTAP5-11Q6L8G4 156 aa1.41□□□□□ -2.18
SNX1-202ENST00000380285 AHNAK2Q8IVF2 5795 aa1.4□□□□□ -2.18
SNX1-202ENST00000380285 PHGR1C9JFL3 82 aa1.38□□□□□ -2.19
SNX1-202ENST00000380285 KRTAP5-8O75690 187 aa1.37□□□□□ -2.19
SNX1-202ENST00000380285 KRTAP21-1Q3LI58 79 aa1.34□□□□□ -2.2
SNX1-202ENST00000380285 KRTAP5-1Q6L8H4 278 aa1.34□□□□□ -2.2
SNX1-202ENST00000380285 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.31□□□□□ -2.2
SNX1-202ENST00000380285 KRTAP21-2Q3LI59 83 aa1.3□□□□□ -2.2
SNX1-202ENST00000380285 AHNAKQ09666 5890 aaKnown RBP1.16□□□□□ -2.22
SNX1-202ENST00000380285 KRTAP5-7Q6L8G8 165 aa1.06□□□□□ -2.24
SNX1-202ENST00000380285 MUC16Q8WXI7 14507 aa0.92□□□□□ -2.26
Retrieved 78 of 20,778 RNA–protein pairs in 66 ms