RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 LOC100996750A0A140TA64 210 aa1.44□□□□□ -2.18
SCN1A-202ENST00000375405 FAT3Q8TDW7 4589 aa1.42□□□□□ -2.18
SCN1A-202ENST00000375405 KRTAP19-6Q3LI70 58 aa1.42□□□□□ -2.18
SCN1A-202ENST00000375405 LRP1Q07954 4544 aaKnown RBP1.42□□□□□ -2.18
SCN1A-202ENST00000375405 RNF213Q63HN8 5207 aa1.41□□□□□ -2.18
SCN1A-202ENST00000375405 KRTAP19-3Q7Z4W3 81 aa1.4□□□□□ -2.18
SCN1A-202ENST00000375405 UBR4Q5T4S7 5183 aa1.39□□□□□ -2.19
SCN1A-202ENST00000375405 KRTAP9-2Q9BYQ4 174 aa1.39□□□□□ -2.19
SCN1A-202ENST00000375405 KRTAP4-9Q9BYQ8 210 aa1.39□□□□□ -2.19
SCN1A-202ENST00000375405 SYNE2Q8WXH0 6885 aaKnown RBP1.39□□□□□ -2.19
SCN1A-202ENST00000375405 MT1BP07438 61 aa1.38□□□□□ -2.19
SCN1A-202ENST00000375405 KRTAP9-6A0A140TA67 174 aa1.38□□□□□ -2.19
SCN1A-202ENST00000375405 KRTAP9-7A8MTY7 169 aa1.38□□□□□ -2.19
SCN1A-202ENST00000375405 KRTAP4-3Q9BYR4 195 aa1.38□□□□□ -2.19
SCN1A-202ENST00000375405 KRTAP9-9Q9BYP9 154 aa1.36□□□□□ -2.19
SCN1A-202ENST00000375405 KRTAP19-7Q3SYF9 63 aa1.35□□□□□ -2.19
SCN1A-202ENST00000375405 KRTAP9-8Q9BYQ0 159 aa1.35□□□□□ -2.19
SCN1A-202ENST00000375405 MUC17Q685J3 4493 aa1.35□□□□□ -2.19
SCN1A-202ENST00000375405 KRTAP20-2Q3LI61 65 aa1.34□□□□□ -2.2
SCN1A-202ENST00000375405 MT1LQ93083 61 aa1.32□□□□□ -2.2
SCN1A-202ENST00000375405 KRTAP5-2Q701N4 177 aa1.32□□□□□ -2.2
SCN1A-202ENST00000375405 KRTAP9-3Q9BYQ3 159 aa1.31□□□□□ -2.2
SCN1A-202ENST00000375405 USH2AO75445 5202 aa1.3□□□□□ -2.2
SCN1A-202ENST00000375405 FAT4Q6V0I7 4981 aa1.3□□□□□ -2.2
SCN1A-202ENST00000375405 MT1EP04732 61 aa1.29□□□□□ -2.2
SCN1A-202ENST00000375405 KRTAP4-12Q9BQ66 201 aa1.29□□□□□ -2.2
SCN1A-202ENST00000375405 KRTAP4-6Q9BYQ5 205 aa1.29□□□□□ -2.2
SCN1A-202ENST00000375405 KRTAP2-3P0C7H8 128 aa1.28□□□□□ -2.2
SCN1A-202ENST00000375405 KRTAP2-4Q9BYR9 128 aa1.28□□□□□ -2.2
SCN1A-202ENST00000375405 MT1MQ8N339 61 aa1.27□□□□□ -2.21
SCN1A-202ENST00000375405 SYNE1Q8NF91 8797 aaKnown RBP1.27□□□□□ -2.21
SCN1A-202ENST00000375405 KRTAP9-4Q9BYQ2 154 aa1.27□□□□□ -2.21
SCN1A-202ENST00000375405 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.26□□□□□ -2.21
SCN1A-202ENST00000375405 LRP2P98164 4655 aa1.25□□□□□ -2.21
SCN1A-202ENST00000375405 KRTAP6-2Q3LI66 62 aa1.25□□□□□ -2.21
SCN1A-202ENST00000375405 KRTAP2-1Q9BYU5 128 aa1.21□□□□□ -2.22
SCN1A-202ENST00000375405 KRTAP2-2Q9BYT5 123 aa1.2□□□□□ -2.22
SCN1A-202ENST00000375405 FSIP2Q5CZC0 6907 aa1.2□□□□□ -2.22
SCN1A-202ENST00000375405 OBSCNQ5VST9 7968 aa1.19□□□□□ -2.22
SCN1A-202ENST00000375405 MUC5BQ9HC84 5762 aaPredicted RBP1.18□□□□□ -2.22
SCN1A-202ENST00000375405 KRTAP6-1Q3LI64 71 aa1.17□□□□□ -2.22
SCN1A-202ENST00000375405 HMCN1Q96RW7 5635 aa1.16□□□□□ -2.22
SCN1A-202ENST00000375405 MT1AP04731 61 aa1.16□□□□□ -2.22
SCN1A-202ENST00000375405 KRTAP4-11Q9BYQ6 195 aa1.16□□□□□ -2.22
SCN1A-202ENST00000375405 KRTAP4-4Q9BYR3 166 aa1.16□□□□□ -2.22
SCN1A-202ENST00000375405 MUC2Q02817 5179 aa1.16□□□□□ -2.22
SCN1A-202ENST00000375405 KRTAP19-2Q3LHN2 52 aa1.15□□□□□ -2.23
SCN1A-202ENST00000375405 KRTAP4-2Q9BYR5 136 aa1.14□□□□□ -2.23
SCN1A-202ENST00000375405 SSPOA2VEC9 5147 aa1.14□□□□□ -2.23
SCN1A-202ENST00000375405 KRTAP9-6A8MVA2 160 aa1.14□□□□□ -2.23
SCN1A-202ENST00000375405 MDN1Q9NU22 5596 aa1.11□□□□□ -2.23
SCN1A-202ENST00000375405 NEBP20929 6669 aa1.1□□□□□ -2.23
SCN1A-202ENST00000375405 KRTAP6-3Q3LI67 103 aa1.08□□□□□ -2.24
SCN1A-202ENST00000375405 GPR98Q8WXG9 6306 aa1.04□□□□□ -2.24
SCN1A-202ENST00000375405 KMT2DO14686 5537 aa1.04□□□□□ -2.24
SCN1A-202ENST00000375405 MUC19Q7Z5P9 8384 aa1.03□□□□□ -2.24
SCN1A-202ENST00000375405 MACF1Q9UPN3 7388 aaKnown RBP1.01□□□□□ -2.25
SCN1A-202ENST00000375405 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.98□□□□□ -2.25
SCN1A-202ENST00000375405 FCGBPQ9Y6R7 5405 aaPredicted RBP0.98□□□□□ -2.25
SCN1A-202ENST00000375405 MUC5ACP98088 5654 aa0.95□□□□□ -2.26
SCN1A-202ENST00000375405 AHNAK2Q8IVF2 5795 aa0.95□□□□□ -2.26
SCN1A-202ENST00000375405 MUC12Q9UKN1 5478 aa0.95□□□□□ -2.26
SCN1A-202ENST00000375405 PHGR1C9JFL3 82 aa0.95□□□□□ -2.26
SCN1A-202ENST00000375405 DSTQ03001 7570 aaKnown RBP0.92□□□□□ -2.26
SCN1A-202ENST00000375405 KRTAP5-3Q6L8H2 238 aa0.91□□□□□ -2.26
SCN1A-202ENST00000375405 KRTAP5-5Q701N2 237 aaPredicted RBP0.9□□□□□ -2.26
SCN1A-202ENST00000375405 KRTAP5-9P26371 169 aa0.88□□□□□ -2.27
SCN1A-202ENST00000375405 AHNAKQ09666 5890 aaKnown RBP0.87□□□□□ -2.27
SCN1A-202ENST00000375405 KRTAP5-4Q6L8H1 288 aa0.86□□□□□ -2.27
SCN1A-202ENST00000375405 KRTAP5-11Q6L8G4 156 aa0.75□□□□□ -2.29
SCN1A-202ENST00000375405 KRTAP5-1Q6L8H4 278 aa0.67□□□□□ -2.3
SCN1A-202ENST00000375405 KRTAP5-8O75690 187 aa0.66□□□□□ -2.3
SCN1A-202ENST00000375405 KRTAP5-10Q6L8G5 202 aa0.63□□□□□ -2.31
SCN1A-202ENST00000375405 KRTAP21-1Q3LI58 79 aa0.62□□□□□ -2.31
SCN1A-202ENST00000375405 KRTAP5-7Q6L8G8 165 aa0.56□□□□□ -2.32
SCN1A-202ENST00000375405 KRTAP21-2Q3LI59 83 aa0.52□□□□□ -2.33
SCN1A-202ENST00000375405 MUC16Q8WXI7 14507 aa0.52□□□□□ -2.33
Retrieved 77 of 20,778 RNA–protein pairs in 6.5 ms