RNA–Protein interactions for RNA: ENST00000370544.9

LMO4-202, Transcript of LIM domain only 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMO4, Length 5,405 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4-202ENST00000370544 LOC100996750A0A140TA64 210 aa6.06□□□□□ -1.44
LMO4-202ENST00000370544 MT3P25713 68 aa6.03□□□□□ -1.44
LMO4-202ENST00000370544 LCE2AQ5TA79 106 aaPredicted RBP6.03□□□□□ -1.44
LMO4-202ENST00000370544 KRTAP4-3Q9BYR4 195 aa6.03□□□□□ -1.44
LMO4-202ENST00000370544 MT4P47944 62 aa6.01□□□□□ -1.45
LMO4-202ENST00000370544 FAT4Q6V0I7 4981 aa5.97□□□□□ -1.45
LMO4-202ENST00000370544 RNF213Q63HN8 5207 aa5.94□□□□□ -1.46
LMO4-202ENST00000370544 KRTAP19-7Q3SYF9 63 aa5.92□□□□□ -1.46
LMO4-202ENST00000370544 HMCN2Q8NDA2 5059 aa5.84□□□□□ -1.47
LMO4-202ENST00000370544 PRM1P04553 51 aa5.81□□□□□ -1.48
LMO4-202ENST00000370544 UBR4Q5T4S7 5183 aa5.78□□□□□ -1.48
LMO4-202ENST00000370544 MT1AP04731 61 aa5.77□□□□□ -1.49
LMO4-202ENST00000370544 KRTAP9-6A0A140TA67 174 aa5.74□□□□□ -1.49
LMO4-202ENST00000370544 LCE1BQ5T7P3 118 aa5.71□□□□□ -1.5
LMO4-202ENST00000370544 LCE1DQ5T752 114 aa5.71□□□□□ -1.5
LMO4-202ENST00000370544 FSIP2Q5CZC0 6907 aa5.71□□□□□ -1.5
LMO4-202ENST00000370544 KRTAP2-3P0C7H8 128 aa5.62□□□□□ -1.51
LMO4-202ENST00000370544 KRTAP2-4Q9BYR9 128 aa5.62□□□□□ -1.51
LMO4-202ENST00000370544 KRTAP2-1Q9BYU5 128 aa5.62□□□□□ -1.51
LMO4-202ENST00000370544 KRTAP4-9Q9BYQ8 210 aa5.59□□□□□ -1.51
LMO4-202ENST00000370544 SYNE1Q8NF91 8797 aaKnown RBP5.55□□□□□ -1.52
LMO4-202ENST00000370544 MUC2Q02817 5179 aa5.53□□□□□ -1.52
LMO4-202ENST00000370544 LCE1AQ5T7P2 110 aa5.52□□□□□ -1.53
LMO4-202ENST00000370544 KRTAP20-1Q3LI63 56 aa5.48□□□□□ -1.53
LMO4-202ENST00000370544 KRTAP6-3Q3LI67 103 aa5.48□□□□□ -1.53
LMO4-202ENST00000370544 KRTAP9-7A8MTY7 169 aa5.43□□□□□ -1.54
LMO4-202ENST00000370544 SYNE2Q8WXH0 6885 aaKnown RBP5.42□□□□□ -1.54
LMO4-202ENST00000370544 KRTAP6-1Q3LI64 71 aa5.42□□□□□ -1.54
LMO4-202ENST00000370544 LCE5AQ5TCM9 118 aa5.4□□□□□ -1.54
LMO4-202ENST00000370544 KRTAP9-6A8MVA2 160 aa5.4□□□□□ -1.55
LMO4-202ENST00000370544 KRTAP6-2Q3LI66 62 aa5.34□□□□□ -1.56
LMO4-202ENST00000370544 KRTAP9-4Q9BYQ2 154 aa5.33□□□□□ -1.56
LMO4-202ENST00000370544 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.3□□□□□ -1.56
LMO4-202ENST00000370544 LCE4AQ5TA78 99 aa5.25□□□□□ -1.57
LMO4-202ENST00000370544 OBSCNQ5VST9 7968 aa5.15□□□□□ -1.59
LMO4-202ENST00000370544 KRTAP2-2Q9BYT5 123 aa5.14□□□□□ -1.59
LMO4-202ENST00000370544 USH2AO75445 5202 aa4.94□□□□□ -1.62
LMO4-202ENST00000370544 LCE1CQ5T751 118 aa4.82□□□□□ -1.64
LMO4-202ENST00000370544 LCE1EQ5T753 118 aa4.82□□□□□ -1.64
LMO4-202ENST00000370544 LCE1FQ5T754 118 aa4.82□□□□□ -1.64
LMO4-202ENST00000370544 FCGBPQ9Y6R7 5405 aaPredicted RBP4.8□□□□□ -1.64
LMO4-202ENST00000370544 KRTAP5-9P26371 169 aa4.72□□□□□ -1.65
LMO4-202ENST00000370544 KMT2DO14686 5537 aa4.7□□□□□ -1.66
LMO4-202ENST00000370544 MACF1Q9UPN3 7388 aaKnown RBP4.64□□□□□ -1.67
LMO4-202ENST00000370544 SSPOA2VEC9 5147 aa4.59□□□□□ -1.67
LMO4-202ENST00000370544 DSTQ03001 7570 aaKnown RBP4.57□□□□□ -1.68
LMO4-202ENST00000370544 NEBP20929 6669 aa4.56□□□□□ -1.68
LMO4-202ENST00000370544 KRTAP9-9Q9BYP9 154 aa4.53□□□□□ -1.68
LMO4-202ENST00000370544 KRTAP4-6Q9BYQ5 205 aa4.5□□□□□ -1.69
LMO4-202ENST00000370544 KRTAP20-2Q3LI61 65 aa4.44□□□□□ -1.7
LMO4-202ENST00000370544 MUC12Q9UKN1 5478 aa4.34□□□□□ -1.71
LMO4-202ENST00000370544 KRTAP4-11Q9BYQ6 195 aa4.29□□□□□ -1.72
LMO4-202ENST00000370544 MDN1Q9NU22 5596 aa4.17□□□□□ -1.74
LMO4-202ENST00000370544 KRTAP5-4Q6L8H1 288 aa4.14□□□□□ -1.75
LMO4-202ENST00000370544 KRTAP4-4Q9BYR3 166 aa4□□□□□ -1.77
LMO4-202ENST00000370544 KRTAP5-5Q701N2 237 aaPredicted RBP3.99□□□□□ -1.77
LMO4-202ENST00000370544 GPR98Q8WXG9 6306 aa3.98□□□□□ -1.77
LMO4-202ENST00000370544 MUC19Q7Z5P9 8384 aa3.98□□□□□ -1.77
LMO4-202ENST00000370544 KRTAP4-12Q9BQ66 201 aa3.96□□□□□ -1.78
LMO4-202ENST00000370544 KRTAP4-2Q9BYR5 136 aa3.96□□□□□ -1.78
LMO4-202ENST00000370544 KRTAP5-3Q6L8H2 238 aa3.61□□□□□ -1.83
LMO4-202ENST00000370544 MUC5ACP98088 5654 aa3.52□□□□□ -1.85
LMO4-202ENST00000370544 HMCN1Q96RW7 5635 aa3.32□□□□□ -1.88
LMO4-202ENST00000370544 KRTAP5-8O75690 187 aa3.3□□□□□ -1.88
LMO4-202ENST00000370544 AHNAK2Q8IVF2 5795 aa3.29□□□□□ -1.88
LMO4-202ENST00000370544 KRTAP5-2Q701N4 177 aa3.27□□□□□ -1.89
LMO4-202ENST00000370544 KRTAP5-10Q6L8G5 202 aa3.22□□□□□ -1.89
LMO4-202ENST00000370544 MUC5BQ9HC84 5762 aaPredicted RBP2.98□□□□□ -1.93
LMO4-202ENST00000370544 PHGR1C9JFL3 82 aa2.93□□□□□ -1.94
LMO4-202ENST00000370544 KRTAP5-11Q6L8G4 156 aa2.92□□□□□ -1.94
LMO4-202ENST00000370544 KRTAP5-1Q6L8H4 278 aa2.87□□□□□ -1.95
LMO4-202ENST00000370544 AHNAKQ09666 5890 aaKnown RBP2.8□□□□□ -1.96
LMO4-202ENST00000370544 KRTAP21-2Q3LI59 83 aa2.77□□□□□ -1.97
LMO4-202ENST00000370544 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.59□□□□□ -1.99
LMO4-202ENST00000370544 KRTAP5-7Q6L8G8 165 aa2.57□□□□□ -2
LMO4-202ENST00000370544 KRTAP21-1Q3LI58 79 aa2.47□□□□□ -2.01
LMO4-202ENST00000370544 MUC16Q8WXI7 14507 aa1.74□□□□□ -2.13
Retrieved 77 of 20,778 RNA–protein pairs in 12.1 ms