RNA–Protein interactions for RNA: ENST00000361373.8

LDB3-202, Transcript of LIM domain binding 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDB3, Length 5,297 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-202ENST00000361373 RNF213Q63HN8 5207 aa4.26□□□□□ -1.73
LDB3-202ENST00000361373 KRTAP4-7Q9BYR0 210 aa4.26□□□□□ -1.73
LDB3-202ENST00000361373 UBR4Q5T4S7 5183 aa4.25□□□□□ -1.73
LDB3-202ENST00000361373 FAT4Q6V0I7 4981 aa4.23□□□□□ -1.73
LDB3-202ENST00000361373 MT3P25713 68 aa4.22□□□□□ -1.73
LDB3-202ENST00000361373 KRTAP9-6A0A140TA67 174 aa4.18□□□□□ -1.74
LDB3-202ENST00000361373 KRTAP19-7Q3SYF9 63 aa4.14□□□□□ -1.75
LDB3-202ENST00000361373 SYNE1Q8NF91 8797 aaKnown RBP4.12□□□□□ -1.75
LDB3-202ENST00000361373 MT4P47944 62 aa4.07□□□□□ -1.76
LDB3-202ENST00000361373 LCE1AQ5T7P2 110 aa4.06□□□□□ -1.76
LDB3-202ENST00000361373 HMCN2Q8NDA2 5059 aa4.06□□□□□ -1.76
LDB3-202ENST00000361373 MT1AP04731 61 aa4.04□□□□□ -1.76
LDB3-202ENST00000361373 KRTAP4-3Q9BYR4 195 aa4.02□□□□□ -1.77
LDB3-202ENST00000361373 KRTAP6-3Q3LI67 103 aa4.01□□□□□ -1.77
LDB3-202ENST00000361373 LOC100996750A0A140TA64 210 aa4□□□□□ -1.77
LDB3-202ENST00000361373 FSIP2Q5CZC0 6907 aa3.99□□□□□ -1.77
LDB3-202ENST00000361373 KRTAP9-7A8MTY7 169 aa3.94□□□□□ -1.78
LDB3-202ENST00000361373 KRTAP20-1Q3LI63 56 aa3.92□□□□□ -1.78
LDB3-202ENST00000361373 MUC2Q02817 5179 aa3.92□□□□□ -1.78
LDB3-202ENST00000361373 KRTAP2-3P0C7H8 128 aa3.86□□□□□ -1.79
LDB3-202ENST00000361373 KRTAP2-4Q9BYR9 128 aa3.86□□□□□ -1.79
LDB3-202ENST00000361373 KRTAP2-1Q9BYU5 128 aa3.86□□□□□ -1.79
LDB3-202ENST00000361373 LCE1DQ5T752 114 aa3.86□□□□□ -1.79
LDB3-202ENST00000361373 LCE5AQ5TCM9 118 aa3.84□□□□□ -1.79
LDB3-202ENST00000361373 LCE1BQ5T7P3 118 aa3.84□□□□□ -1.8
LDB3-202ENST00000361373 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.83□□□□□ -1.8
LDB3-202ENST00000361373 PRM1P04553 51 aa3.81□□□□□ -1.8
LDB3-202ENST00000361373 LCE4AQ5TA78 99 aa3.8□□□□□ -1.8
LDB3-202ENST00000361373 SYNE2Q8WXH0 6885 aaKnown RBP3.79□□□□□ -1.8
LDB3-202ENST00000361373 KRTAP2-2Q9BYT5 123 aa3.74□□□□□ -1.81
LDB3-202ENST00000361373 KRTAP9-4Q9BYQ2 154 aa3.71□□□□□ -1.82
LDB3-202ENST00000361373 OBSCNQ5VST9 7968 aa3.7□□□□□ -1.82
LDB3-202ENST00000361373 KRTAP6-1Q3LI64 71 aa3.69□□□□□ -1.82
LDB3-202ENST00000361373 KRTAP9-6A8MVA2 160 aa3.65□□□□□ -1.83
LDB3-202ENST00000361373 KRTAP4-9Q9BYQ8 210 aa3.64□□□□□ -1.83
LDB3-202ENST00000361373 KRTAP6-2Q3LI66 62 aa3.64□□□□□ -1.83
LDB3-202ENST00000361373 USH2AO75445 5202 aa3.54□□□□□ -1.84
LDB3-202ENST00000361373 KRTAP5-9P26371 169 aa3.48□□□□□ -1.85
LDB3-202ENST00000361373 FCGBPQ9Y6R7 5405 aaPredicted RBP3.37□□□□□ -1.87
LDB3-202ENST00000361373 NEBP20929 6669 aa3.3□□□□□ -1.88
LDB3-202ENST00000361373 SSPOA2VEC9 5147 aa3.3□□□□□ -1.88
LDB3-202ENST00000361373 DSTQ03001 7570 aaKnown RBP3.29□□□□□ -1.88
LDB3-202ENST00000361373 MACF1Q9UPN3 7388 aaKnown RBP3.26□□□□□ -1.89
LDB3-202ENST00000361373 KMT2DO14686 5537 aa3.25□□□□□ -1.89
LDB3-202ENST00000361373 LCE1CQ5T751 118 aa3.24□□□□□ -1.89
LDB3-202ENST00000361373 LCE1EQ5T753 118 aa3.24□□□□□ -1.89
LDB3-202ENST00000361373 LCE1FQ5T754 118 aa3.24□□□□□ -1.89
LDB3-202ENST00000361373 KRTAP9-9Q9BYP9 154 aa3.21□□□□□ -1.9
LDB3-202ENST00000361373 KRTAP20-2Q3LI61 65 aa3.15□□□□□ -1.91
LDB3-202ENST00000361373 MDN1Q9NU22 5596 aa3.13□□□□□ -1.91
LDB3-202ENST00000361373 KRTAP4-6Q9BYQ5 205 aa3.11□□□□□ -1.91
LDB3-202ENST00000361373 MUC12Q9UKN1 5478 aa3.06□□□□□ -1.92
LDB3-202ENST00000361373 GPR98Q8WXG9 6306 aa3.03□□□□□ -1.92
LDB3-202ENST00000361373 KRTAP5-4Q6L8H1 288 aa2.99□□□□□ -1.93
LDB3-202ENST00000361373 MUC19Q7Z5P9 8384 aa2.93□□□□□ -1.94
LDB3-202ENST00000361373 KRTAP5-5Q701N2 237 aaPredicted RBP2.85□□□□□ -1.95
LDB3-202ENST00000361373 KRTAP4-11Q9BYQ6 195 aa2.84□□□□□ -1.95
LDB3-202ENST00000361373 KRTAP5-3Q6L8H2 238 aa2.62□□□□□ -1.99
LDB3-202ENST00000361373 KRTAP4-12Q9BQ66 201 aa2.62□□□□□ -1.99
LDB3-202ENST00000361373 KRTAP4-2Q9BYR5 136 aa2.62□□□□□ -1.99
LDB3-202ENST00000361373 KRTAP4-4Q9BYR3 166 aa2.59□□□□□ -1.99
LDB3-202ENST00000361373 AHNAK2Q8IVF2 5795 aa2.57□□□□□ -2
LDB3-202ENST00000361373 MUC5ACP98088 5654 aa2.52□□□□□ -2.01
LDB3-202ENST00000361373 HMCN1Q96RW7 5635 aa2.46□□□□□ -2.02
LDB3-202ENST00000361373 KRTAP5-2Q701N4 177 aa2.4□□□□□ -2.02
LDB3-202ENST00000361373 KRTAP5-8O75690 187 aa2.36□□□□□ -2.03
LDB3-202ENST00000361373 KRTAP5-10Q6L8G5 202 aa2.23□□□□□ -2.05
LDB3-202ENST00000361373 KRTAP5-11Q6L8G4 156 aa2.15□□□□□ -2.07
LDB3-202ENST00000361373 MUC5BQ9HC84 5762 aaPredicted RBP2.15□□□□□ -2.07
LDB3-202ENST00000361373 AHNAKQ09666 5890 aaKnown RBP2.09□□□□□ -2.08
LDB3-202ENST00000361373 KRTAP5-1Q6L8H4 278 aa2.07□□□□□ -2.08
LDB3-202ENST00000361373 PHGR1C9JFL3 82 aa2.04□□□□□ -2.08
LDB3-202ENST00000361373 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.95□□□□□ -2.1
LDB3-202ENST00000361373 KRTAP21-2Q3LI59 83 aa1.95□□□□□ -2.1
LDB3-202ENST00000361373 KRTAP5-7Q6L8G8 165 aa1.85□□□□□ -2.11
LDB3-202ENST00000361373 KRTAP21-1Q3LI58 79 aa1.67□□□□□ -2.14
LDB3-202ENST00000361373 MUC16Q8WXI7 14507 aa1.23□□□□□ -2.21
Retrieved 77 of 20,778 RNA–protein pairs in 42.8 ms