RNA–Protein interactions for RNA: ENST00000351677.6

PTPN11-201, Transcript of protein tyrosine phosphatase, non-receptor type 11, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PTPN11, Length 6,101 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN11-201ENST00000351677 FAT4Q6V0I7 4981 aa4.95□□□□□ -1.62
PTPN11-201ENST00000351677 HMCN2Q8NDA2 5059 aa4.94□□□□□ -1.62
PTPN11-201ENST00000351677 LCE2DQ5TA82 110 aaPredicted RBP4.9□□□□□ -1.63
PTPN11-201ENST00000351677 UBR4Q5T4S7 5183 aa4.89□□□□□ -1.63
PTPN11-201ENST00000351677 KRTAP19-7Q3SYF9 63 aa4.88□□□□□ -1.63
PTPN11-201ENST00000351677 FSIP2Q5CZC0 6907 aa4.88□□□□□ -1.63
PTPN11-201ENST00000351677 LCE2AQ5TA79 106 aaPredicted RBP4.86□□□□□ -1.63
PTPN11-201ENST00000351677 RNF213Q63HN8 5207 aa4.85□□□□□ -1.63
PTPN11-201ENST00000351677 KRTAP9-2Q9BYQ4 174 aa4.83□□□□□ -1.64
PTPN11-201ENST00000351677 MT4P47944 62 aa4.82□□□□□ -1.64
PTPN11-201ENST00000351677 MT3P25713 68 aa4.81□□□□□ -1.64
PTPN11-201ENST00000351677 PRM1P04553 51 aa4.79□□□□□ -1.64
PTPN11-201ENST00000351677 SYNE1Q8NF91 8797 aaKnown RBP4.71□□□□□ -1.66
PTPN11-201ENST00000351677 KRTAP4-9Q9BYQ8 210 aa4.69□□□□□ -1.66
PTPN11-201ENST00000351677 MUC2Q02817 5179 aa4.65□□□□□ -1.67
PTPN11-201ENST00000351677 KRTAP2-3P0C7H8 128 aa4.65□□□□□ -1.67
PTPN11-201ENST00000351677 KRTAP2-4Q9BYR9 128 aa4.65□□□□□ -1.67
PTPN11-201ENST00000351677 KRTAP2-1Q9BYU5 128 aa4.65□□□□□ -1.67
PTPN11-201ENST00000351677 MT1AP04731 61 aa4.63□□□□□ -1.67
PTPN11-201ENST00000351677 LCE1BQ5T7P3 118 aa4.6□□□□□ -1.67
PTPN11-201ENST00000351677 LCE1DQ5T752 114 aa4.59□□□□□ -1.67
PTPN11-201ENST00000351677 KRTAP9-6A8MVA2 160 aa4.58□□□□□ -1.68
PTPN11-201ENST00000351677 SYNE2Q8WXH0 6885 aaKnown RBP4.57□□□□□ -1.68
PTPN11-201ENST00000351677 KRTAP6-1Q3LI64 71 aa4.45□□□□□ -1.7
PTPN11-201ENST00000351677 KRTAP9-6A0A140TA67 174 aa4.45□□□□□ -1.7
PTPN11-201ENST00000351677 LCE5AQ5TCM9 118 aa4.39□□□□□ -1.71
PTPN11-201ENST00000351677 KRTAP6-2Q3LI66 62 aa4.35□□□□□ -1.71
PTPN11-201ENST00000351677 OBSCNQ5VST9 7968 aa4.35□□□□□ -1.71
PTPN11-201ENST00000351677 LCE1AQ5T7P2 110 aa4.33□□□□□ -1.72
PTPN11-201ENST00000351677 KRTAP9-4Q9BYQ2 154 aa4.3□□□□□ -1.72
PTPN11-201ENST00000351677 KRTAP6-3Q3LI67 103 aa4.27□□□□□ -1.73
PTPN11-201ENST00000351677 KRTAP9-7A8MTY7 169 aa4.24□□□□□ -1.73
PTPN11-201ENST00000351677 KRTAP20-1Q3LI63 56 aa4.23□□□□□ -1.73
PTPN11-201ENST00000351677 FCGBPQ9Y6R7 5405 aaPredicted RBP4.21□□□□□ -1.74
PTPN11-201ENST00000351677 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.18□□□□□ -1.74
PTPN11-201ENST00000351677 KMT2DO14686 5537 aa4.18□□□□□ -1.74
PTPN11-201ENST00000351677 USH2AO75445 5202 aa4.16□□□□□ -1.74
PTPN11-201ENST00000351677 LCE4AQ5TA78 99 aa4.09□□□□□ -1.75
PTPN11-201ENST00000351677 DSTQ03001 7570 aaKnown RBP4.05□□□□□ -1.76
PTPN11-201ENST00000351677 KRTAP2-2Q9BYT5 123 aa4□□□□□ -1.77
PTPN11-201ENST00000351677 MACF1Q9UPN3 7388 aaKnown RBP3.87□□□□□ -1.79
PTPN11-201ENST00000351677 SSPOA2VEC9 5147 aa3.85□□□□□ -1.79
PTPN11-201ENST00000351677 LCE1CQ5T751 118 aa3.82□□□□□ -1.8
PTPN11-201ENST00000351677 LCE1EQ5T753 118 aa3.82□□□□□ -1.8
PTPN11-201ENST00000351677 LCE1FQ5T754 118 aa3.82□□□□□ -1.8
PTPN11-201ENST00000351677 MUC12Q9UKN1 5478 aa3.79□□□□□ -1.8
PTPN11-201ENST00000351677 KRTAP5-9P26371 169 aa3.75□□□□□ -1.81
PTPN11-201ENST00000351677 KRTAP4-6Q9BYQ5 205 aa3.69□□□□□ -1.82
PTPN11-201ENST00000351677 NEBP20929 6669 aa3.58□□□□□ -1.84
PTPN11-201ENST00000351677 KRTAP4-11Q9BYQ6 195 aa3.57□□□□□ -1.84
PTPN11-201ENST00000351677 KRTAP20-2Q3LI61 65 aa3.57□□□□□ -1.84
PTPN11-201ENST00000351677 KRTAP9-9Q9BYP9 154 aa3.51□□□□□ -1.85
PTPN11-201ENST00000351677 MDN1Q9NU22 5596 aa3.43□□□□□ -1.86
PTPN11-201ENST00000351677 KRTAP5-5Q701N2 237 aaPredicted RBP3.39□□□□□ -1.87
PTPN11-201ENST00000351677 MUC19Q7Z5P9 8384 aa3.34□□□□□ -1.87
PTPN11-201ENST00000351677 KRTAP4-4Q9BYR3 166 aa3.32□□□□□ -1.88
PTPN11-201ENST00000351677 KRTAP5-4Q6L8H1 288 aa3.26□□□□□ -1.89
PTPN11-201ENST00000351677 KRTAP4-12Q9BQ66 201 aa3.24□□□□□ -1.89
PTPN11-201ENST00000351677 KRTAP4-2Q9BYR5 136 aa3.24□□□□□ -1.89
PTPN11-201ENST00000351677 MUC5ACP98088 5654 aa2.97□□□□□ -1.93
PTPN11-201ENST00000351677 GPR98Q8WXG9 6306 aa2.93□□□□□ -1.94
PTPN11-201ENST00000351677 KRTAP5-3Q6L8H2 238 aa2.84□□□□□ -1.96
PTPN11-201ENST00000351677 HMCN1Q96RW7 5635 aa2.76□□□□□ -1.97
PTPN11-201ENST00000351677 KRTAP5-10Q6L8G5 202 aa2.68□□□□□ -1.98
PTPN11-201ENST00000351677 KRTAP5-8O75690 187 aa2.66□□□□□ -1.98
PTPN11-201ENST00000351677 KRTAP5-2Q701N4 177 aa2.64□□□□□ -1.99
PTPN11-201ENST00000351677 AHNAK2Q8IVF2 5795 aa2.53□□□□□ -2
PTPN11-201ENST00000351677 KRTAP5-1Q6L8H4 278 aa2.38□□□□□ -2.03
PTPN11-201ENST00000351677 MUC5BQ9HC84 5762 aaPredicted RBP2.38□□□□□ -2.03
PTPN11-201ENST00000351677 KRTAP5-11Q6L8G4 156 aa2.32□□□□□ -2.04
PTPN11-201ENST00000351677 KRTAP21-2Q3LI59 83 aa2.3□□□□□ -2.04
PTPN11-201ENST00000351677 PHGR1C9JFL3 82 aa2.28□□□□□ -2.04
PTPN11-201ENST00000351677 AHNAKQ09666 5890 aaKnown RBP2.21□□□□□ -2.06
PTPN11-201ENST00000351677 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.07□□□□□ -2.08
PTPN11-201ENST00000351677 KRTAP21-1Q3LI58 79 aa2.07□□□□□ -2.08
PTPN11-201ENST00000351677 KRTAP5-7Q6L8G8 165 aa1.85□□□□□ -2.11
PTPN11-201ENST00000351677 MUC16Q8WXI7 14507 aa1.41□□□□□ -2.18
Retrieved 77 of 20,778 RNA–protein pairs in 11.9 ms