RNA–Protein interactions for RNA: ENST00000342494.7

UBE3B-202, Transcript of ubiquitin protein ligase E3B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBE3B, Length 5,722 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-202ENST00000342494 ABCA13Q86UQ4 5058 aa4.6□□□□□ -1.67
UBE3B-202ENST00000342494 LCE1BQ5T7P3 118 aa4.59□□□□□ -1.67
UBE3B-202ENST00000342494 LCE1DQ5T752 114 aa4.57□□□□□ -1.68
UBE3B-202ENST00000342494 LOC100996750A0A140TA64 210 aa4.57□□□□□ -1.68
UBE3B-202ENST00000342494 KRTAP4-3Q9BYR4 195 aa4.55□□□□□ -1.68
UBE3B-202ENST00000342494 MUC17Q685J3 4493 aa4.54□□□□□ -1.68
UBE3B-202ENST00000342494 FLGP20930 4061 aaPredicted RBP4.49□□□□□ -1.69
UBE3B-202ENST00000342494 LCE2AQ5TA79 106 aaPredicted RBP4.49□□□□□ -1.69
UBE3B-202ENST00000342494 FSIP2Q5CZC0 6907 aa4.48□□□□□ -1.69
UBE3B-202ENST00000342494 TNXBP22105 4242 aa4.47□□□□□ -1.69
UBE3B-202ENST00000342494 UBR4Q5T4S7 5183 aa4.46□□□□□ -1.7
UBE3B-202ENST00000342494 PRM1P04553 51 aa4.45□□□□□ -1.7
UBE3B-202ENST00000342494 KRTAP20-1Q3LI63 56 aa4.45□□□□□ -1.7
UBE3B-202ENST00000342494 RNF213Q63HN8 5207 aa4.4□□□□□ -1.71
UBE3B-202ENST00000342494 MT1AP04731 61 aa4.39□□□□□ -1.71
UBE3B-202ENST00000342494 KRTAP9-7A8MTY7 169 aa4.38□□□□□ -1.71
UBE3B-202ENST00000342494 KRTAP19-7Q3SYF9 63 aa4.38□□□□□ -1.71
UBE3B-202ENST00000342494 FAT4Q6V0I7 4981 aa4.35□□□□□ -1.71
UBE3B-202ENST00000342494 LCE5AQ5TCM9 118 aa4.33□□□□□ -1.72
UBE3B-202ENST00000342494 SYNE2Q8WXH0 6885 aaKnown RBP4.32□□□□□ -1.72
UBE3B-202ENST00000342494 MUC2Q02817 5179 aa4.3□□□□□ -1.72
UBE3B-202ENST00000342494 KRTAP6-3Q3LI67 103 aa4.27□□□□□ -1.73
UBE3B-202ENST00000342494 KRTAP2-3P0C7H8 128 aa4.26□□□□□ -1.73
UBE3B-202ENST00000342494 KRTAP2-4Q9BYR9 128 aa4.26□□□□□ -1.73
UBE3B-202ENST00000342494 KRTAP2-1Q9BYU5 128 aa4.26□□□□□ -1.73
UBE3B-202ENST00000342494 LCE1AQ5T7P2 110 aa4.25□□□□□ -1.73
UBE3B-202ENST00000342494 KRTAP4-9Q9BYQ8 210 aa4.23□□□□□ -1.73
UBE3B-202ENST00000342494 HMCN2Q8NDA2 5059 aa4.2□□□□□ -1.74
UBE3B-202ENST00000342494 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.16□□□□□ -1.74
UBE3B-202ENST00000342494 OBSCNQ5VST9 7968 aa4.14□□□□□ -1.75
UBE3B-202ENST00000342494 LCE4AQ5TA78 99 aa4.11□□□□□ -1.75
UBE3B-202ENST00000342494 KRTAP6-2Q3LI66 62 aa4.1□□□□□ -1.75
UBE3B-202ENST00000342494 KRTAP2-2Q9BYT5 123 aa4.1□□□□□ -1.75
UBE3B-202ENST00000342494 KRTAP6-1Q3LI64 71 aa4.08□□□□□ -1.76
UBE3B-202ENST00000342494 KRTAP9-4Q9BYQ2 154 aa4.04□□□□□ -1.76
UBE3B-202ENST00000342494 LCE1CQ5T751 118 aa3.97□□□□□ -1.77
UBE3B-202ENST00000342494 LCE1EQ5T753 118 aa3.97□□□□□ -1.77
UBE3B-202ENST00000342494 LCE1FQ5T754 118 aa3.97□□□□□ -1.77
UBE3B-202ENST00000342494 KRTAP9-6A8MVA2 160 aa3.89□□□□□ -1.79
UBE3B-202ENST00000342494 USH2AO75445 5202 aa3.76□□□□□ -1.81
UBE3B-202ENST00000342494 DSTQ03001 7570 aaKnown RBP3.72□□□□□ -1.81
UBE3B-202ENST00000342494 MACF1Q9UPN3 7388 aaKnown RBP3.7□□□□□ -1.82
UBE3B-202ENST00000342494 KRTAP9-9Q9BYP9 154 aa3.69□□□□□ -1.82
UBE3B-202ENST00000342494 FCGBPQ9Y6R7 5405 aaPredicted RBP3.69□□□□□ -1.82
UBE3B-202ENST00000342494 NEBP20929 6669 aa3.6□□□□□ -1.83
UBE3B-202ENST00000342494 KMT2DO14686 5537 aa3.53□□□□□ -1.84
UBE3B-202ENST00000342494 KRTAP5-9P26371 169 aa3.5□□□□□ -1.85
UBE3B-202ENST00000342494 KRTAP4-6Q9BYQ5 205 aa3.44□□□□□ -1.86
UBE3B-202ENST00000342494 GPR98Q8WXG9 6306 aa3.42□□□□□ -1.86
UBE3B-202ENST00000342494 KRTAP20-2Q3LI61 65 aa3.39□□□□□ -1.87
UBE3B-202ENST00000342494 MDN1Q9NU22 5596 aa3.38□□□□□ -1.87
UBE3B-202ENST00000342494 MUC19Q7Z5P9 8384 aa3.36□□□□□ -1.87
UBE3B-202ENST00000342494 SSPOA2VEC9 5147 aa3.36□□□□□ -1.87
UBE3B-202ENST00000342494 KRTAP4-11Q9BYQ6 195 aa3.28□□□□□ -1.88
UBE3B-202ENST00000342494 MUC12Q9UKN1 5478 aa3.18□□□□□ -1.9
UBE3B-202ENST00000342494 KRTAP4-12Q9BQ66 201 aa3.16□□□□□ -1.9
UBE3B-202ENST00000342494 KRTAP4-2Q9BYR5 136 aa3.16□□□□□ -1.9
UBE3B-202ENST00000342494 KRTAP4-4Q9BYR3 166 aa3.14□□□□□ -1.91
UBE3B-202ENST00000342494 KRTAP5-4Q6L8H1 288 aa3.13□□□□□ -1.91
UBE3B-202ENST00000342494 KRTAP5-5Q701N2 237 aaPredicted RBP2.81□□□□□ -1.96
UBE3B-202ENST00000342494 KRTAP5-3Q6L8H2 238 aa2.8□□□□□ -1.96
UBE3B-202ENST00000342494 MUC5ACP98088 5654 aa2.78□□□□□ -1.96
UBE3B-202ENST00000342494 AHNAK2Q8IVF2 5795 aa2.71□□□□□ -1.98
UBE3B-202ENST00000342494 HMCN1Q96RW7 5635 aa2.67□□□□□ -1.98
UBE3B-202ENST00000342494 KRTAP5-8O75690 187 aa2.56□□□□□ -2
UBE3B-202ENST00000342494 PHGR1C9JFL3 82 aa2.44□□□□□ -2.02
UBE3B-202ENST00000342494 KRTAP5-10Q6L8G5 202 aa2.33□□□□□ -2.04
UBE3B-202ENST00000342494 KRTAP5-2Q701N4 177 aa2.3□□□□□ -2.04
UBE3B-202ENST00000342494 MUC5BQ9HC84 5762 aaPredicted RBP2.29□□□□□ -2.04
UBE3B-202ENST00000342494 AHNAKQ09666 5890 aaKnown RBP2.27□□□□□ -2.05
UBE3B-202ENST00000342494 KRTAP5-11Q6L8G4 156 aa2.17□□□□□ -2.06
UBE3B-202ENST00000342494 KRTAP5-1Q6L8H4 278 aa2.1□□□□□ -2.07
UBE3B-202ENST00000342494 KRTAP21-2Q3LI59 83 aa1.98□□□□□ -2.09
UBE3B-202ENST00000342494 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.8□□□□□ -2.12
UBE3B-202ENST00000342494 KRTAP5-7Q6L8G8 165 aa1.78□□□□□ -2.12
UBE3B-202ENST00000342494 KRTAP21-1Q3LI58 79 aa1.71□□□□□ -2.14
UBE3B-202ENST00000342494 MUC16Q8WXI7 14507 aa1.38□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 98.2 ms