RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 LPAP08519 4548 aa3.87□□□□□ -1.79
COL7A1-201ENST00000328333 KRTAP6-2Q3LI66 62 aa3.86□□□□□ -1.79
COL7A1-201ENST00000328333 KRTAP4-3Q9BYR4 195 aa3.84□□□□□ -1.8
COL7A1-201ENST00000328333 LCE5AQ5TCM9 118 aa3.82□□□□□ -1.8
COL7A1-201ENST00000328333 KMT2CQ8NEZ4 4911 aaKnown RBP3.81□□□□□ -1.8
COL7A1-201ENST00000328333 LCE1AQ5T7P2 110 aa3.79□□□□□ -1.8
COL7A1-201ENST00000328333 KRTAP4-9Q9BYQ8 210 aa3.76□□□□□ -1.81
COL7A1-201ENST00000328333 BIRC6Q9NR09 4857 aa3.68□□□□□ -1.82
COL7A1-201ENST00000328333 KRTAP9-4Q9BYQ2 154 aa3.67□□□□□ -1.82
COL7A1-201ENST00000328333 HERC1Q15751 4861 aa3.66□□□□□ -1.82
COL7A1-201ENST00000328333 KRTAP9-2Q9BYQ4 174 aa3.66□□□□□ -1.82
COL7A1-201ENST00000328333 LCE4AQ5TA78 99 aa3.65□□□□□ -1.82
COL7A1-201ENST00000328333 HERC2O95714 4834 aa3.65□□□□□ -1.83
COL7A1-201ENST00000328333 KRTAP6-1Q3LI64 71 aa3.63□□□□□ -1.83
COL7A1-201ENST00000328333 LCE1CQ5T751 118 aa3.62□□□□□ -1.83
COL7A1-201ENST00000328333 LCE1EQ5T753 118 aa3.62□□□□□ -1.83
COL7A1-201ENST00000328333 LCE1FQ5T754 118 aa3.62□□□□□ -1.83
COL7A1-201ENST00000328333 HYDINQ4G0P3 5121 aa3.6□□□□□ -1.83
COL7A1-201ENST00000328333 KRTAP2-2Q9BYT5 123 aa3.6□□□□□ -1.83
COL7A1-201ENST00000328333 KRTAP9-6A8MVA2 160 aa3.59□□□□□ -1.83
COL7A1-201ENST00000328333 RYR2Q92736 4967 aa3.59□□□□□ -1.84
COL7A1-201ENST00000328333 SYNE2Q8WXH0 6885 aaKnown RBP3.59□□□□□ -1.84
COL7A1-201ENST00000328333 KRTAP20-1Q3LI63 56 aa3.55□□□□□ -1.84
COL7A1-201ENST00000328333 KRTAP9-7A8MTY7 169 aa3.54□□□□□ -1.84
COL7A1-201ENST00000328333 SYNE1Q8NF91 8797 aaKnown RBP3.46□□□□□ -1.86
COL7A1-201ENST00000328333 LCE2AQ5TA79 106 aaPredicted RBP3.42□□□□□ -1.86
COL7A1-201ENST00000328333 KRTAP6-3Q3LI67 103 aa3.41□□□□□ -1.86
COL7A1-201ENST00000328333 KRTAP9-6A0A140TA67 174 aa3.38□□□□□ -1.87
COL7A1-201ENST00000328333 KIAA1109Q2LD37 5005 aa3.33□□□□□ -1.88
COL7A1-201ENST00000328333 EPPK1P58107 5090 aaKnown RBP3.32□□□□□ -1.88
COL7A1-201ENST00000328333 KRTAP9-9Q9BYP9 154 aa3.25□□□□□ -1.89
COL7A1-201ENST00000328333 HMCN2Q8NDA2 5059 aa3.19□□□□□ -1.9
COL7A1-201ENST00000328333 RNF213Q63HN8 5207 aa3.19□□□□□ -1.9
COL7A1-201ENST00000328333 KRTAP4-11Q9BYQ6 195 aa3.12□□□□□ -1.91
COL7A1-201ENST00000328333 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.11□□□□□ -1.91
COL7A1-201ENST00000328333 MUC2Q02817 5179 aa3.08□□□□□ -1.92
COL7A1-201ENST00000328333 UBR4Q5T4S7 5183 aa3.05□□□□□ -1.92
COL7A1-201ENST00000328333 ABCA13Q86UQ4 5058 aa3.01□□□□□ -1.93
COL7A1-201ENST00000328333 FSIP2Q5CZC0 6907 aa2.99□□□□□ -1.93
COL7A1-201ENST00000328333 FAT4Q6V0I7 4981 aa2.96□□□□□ -1.93
COL7A1-201ENST00000328333 KRTAP5-9P26371 169 aa2.92□□□□□ -1.94
COL7A1-201ENST00000328333 KRTAP20-2Q3LI61 65 aa2.88□□□□□ -1.95
COL7A1-201ENST00000328333 OBSCNQ5VST9 7968 aa2.82□□□□□ -1.96
COL7A1-201ENST00000328333 MDN1Q9NU22 5596 aa2.81□□□□□ -1.96
COL7A1-201ENST00000328333 KRTAP5-5Q701N2 237 aaPredicted RBP2.78□□□□□ -1.96
COL7A1-201ENST00000328333 KRTAP4-6Q9BYQ5 205 aa2.76□□□□□ -1.97
COL7A1-201ENST00000328333 KRTAP5-4Q6L8H1 288 aa2.72□□□□□ -1.97
COL7A1-201ENST00000328333 KRTAP4-4Q9BYR3 166 aa2.72□□□□□ -1.97
COL7A1-201ENST00000328333 KMT2DO14686 5537 aa2.7□□□□□ -1.98
COL7A1-201ENST00000328333 NEBP20929 6669 aa2.66□□□□□ -1.98
COL7A1-201ENST00000328333 DSTQ03001 7570 aaKnown RBP2.65□□□□□ -1.98
COL7A1-201ENST00000328333 FCGBPQ9Y6R7 5405 aaPredicted RBP2.62□□□□□ -1.99
COL7A1-201ENST00000328333 USH2AO75445 5202 aa2.59□□□□□ -2
COL7A1-201ENST00000328333 KRTAP4-12Q9BQ66 201 aa2.57□□□□□ -2
COL7A1-201ENST00000328333 KRTAP4-2Q9BYR5 136 aa2.57□□□□□ -2
COL7A1-201ENST00000328333 MACF1Q9UPN3 7388 aaKnown RBP2.55□□□□□ -2
COL7A1-201ENST00000328333 MUC12Q9UKN1 5478 aa2.46□□□□□ -2.01
COL7A1-201ENST00000328333 GPR98Q8WXG9 6306 aa2.41□□□□□ -2.02
COL7A1-201ENST00000328333 MUC19Q7Z5P9 8384 aa2.4□□□□□ -2.03
COL7A1-201ENST00000328333 MUC5ACP98088 5654 aa2.39□□□□□ -2.03
COL7A1-201ENST00000328333 KRTAP5-3Q6L8H2 238 aa2.38□□□□□ -2.03
COL7A1-201ENST00000328333 SSPOA2VEC9 5147 aa2.33□□□□□ -2.04
COL7A1-201ENST00000328333 KRTAP5-10Q6L8G5 202 aa2.28□□□□□ -2.05
COL7A1-201ENST00000328333 MUC5BQ9HC84 5762 aaPredicted RBP2.22□□□□□ -2.05
COL7A1-201ENST00000328333 HMCN1Q96RW7 5635 aa2.19□□□□□ -2.06
COL7A1-201ENST00000328333 AHNAK2Q8IVF2 5795 aa2.11□□□□□ -2.07
COL7A1-201ENST00000328333 KRTAP5-2Q701N4 177 aa2.03□□□□□ -2.08
COL7A1-201ENST00000328333 KRTAP5-11Q6L8G4 156 aa2.03□□□□□ -2.09
COL7A1-201ENST00000328333 PHGR1C9JFL3 82 aa1.98□□□□□ -2.09
COL7A1-201ENST00000328333 AHNAKQ09666 5890 aaKnown RBP1.94□□□□□ -2.1
COL7A1-201ENST00000328333 KRTAP5-8O75690 187 aa1.92□□□□□ -2.1
COL7A1-201ENST00000328333 KRTAP21-1Q3LI58 79 aa1.9□□□□□ -2.11
COL7A1-201ENST00000328333 KRTAP5-1Q6L8H4 278 aa1.88□□□□□ -2.11
COL7A1-201ENST00000328333 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.82□□□□□ -2.12
COL7A1-201ENST00000328333 KRTAP21-2Q3LI59 83 aa1.81□□□□□ -2.12
COL7A1-201ENST00000328333 KRTAP5-7Q6L8G8 165 aa1.36□□□□□ -2.19
COL7A1-201ENST00000328333 MUC16Q8WXI7 14507 aa1.34□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 6.1 ms