RNA–Protein interactions for RNA: ENST00000312481.11

COL6A5-202, Transcript of collagen type VI alpha 5 chain, humanhuman

TSL 1 (best)

Gene COL6A5, Length 9,226 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5-202ENST00000312481 HYDINQ4G0P3 5121 aa2.66□□□□□ -1.98
COL6A5-202ENST00000312481 KRTAP9-2Q9BYQ4 174 aa2.64□□□□□ -1.99
COL6A5-202ENST00000312481 KRTAP19-7Q3SYF9 63 aa2.63□□□□□ -1.99
COL6A5-202ENST00000312481 KRTAP4-8A0A0G2JLE6 195 aa2.6□□□□□ -1.99
COL6A5-202ENST00000312481 KRTAP4-8Q9BYQ9 185 aa2.6□□□□□ -1.99
COL6A5-202ENST00000312481 LCE2AQ5TA79 106 aaPredicted RBP2.59□□□□□ -1.99
COL6A5-202ENST00000312481 KRTAP9-6A0A140TA67 174 aa2.59□□□□□ -1.99
COL6A5-202ENST00000312481 KMT2CQ8NEZ4 4911 aaKnown RBP2.55□□□□□ -2
COL6A5-202ENST00000312481 LPAP08519 4548 aa2.55□□□□□ -2
COL6A5-202ENST00000312481 KRTAP4-7Q9BYR0 210 aa2.55□□□□□ -2
COL6A5-202ENST00000312481 LCE1DQ5T752 114 aa2.53□□□□□ -2.01
COL6A5-202ENST00000312481 KRTAP4-9Q9BYQ8 210 aa2.52□□□□□ -2.01
COL6A5-202ENST00000312481 LCE5AQ5TCM9 118 aa2.51□□□□□ -2.01
COL6A5-202ENST00000312481 PRM1P04553 51 aa2.51□□□□□ -2.01
COL6A5-202ENST00000312481 LCE4AQ5TA78 99 aa2.5□□□□□ -2.01
COL6A5-202ENST00000312481 LCE1CQ5T751 118 aa2.46□□□□□ -2.02
COL6A5-202ENST00000312481 LCE1EQ5T753 118 aa2.46□□□□□ -2.02
COL6A5-202ENST00000312481 LCE1FQ5T754 118 aa2.46□□□□□ -2.02
COL6A5-202ENST00000312481 ABCA13Q86UQ4 5058 aa2.45□□□□□ -2.02
COL6A5-202ENST00000312481 LOC100996750A0A140TA64 210 aa2.45□□□□□ -2.02
COL6A5-202ENST00000312481 KRTAP6-3Q3LI67 103 aa2.44□□□□□ -2.02
COL6A5-202ENST00000312481 KRTAP4-3Q9BYR4 195 aa2.44□□□□□ -2.02
COL6A5-202ENST00000312481 EPPK1P58107 5090 aaKnown RBP2.42□□□□□ -2.02
COL6A5-202ENST00000312481 RNF213Q63HN8 5207 aa2.39□□□□□ -2.03
COL6A5-202ENST00000312481 KRTAP9-4Q9BYQ2 154 aa2.39□□□□□ -2.03
COL6A5-202ENST00000312481 KRTAP9-7A8MTY7 169 aa2.38□□□□□ -2.03
COL6A5-202ENST00000312481 KRTAP20-1Q3LI63 56 aa2.38□□□□□ -2.03
COL6A5-202ENST00000312481 KRTAP9-6A8MVA2 160 aa2.32□□□□□ -2.04
COL6A5-202ENST00000312481 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.32□□□□□ -2.04
COL6A5-202ENST00000312481 SYNE2Q8WXH0 6885 aaKnown RBP2.32□□□□□ -2.04
COL6A5-202ENST00000312481 HMCN2Q8NDA2 5059 aa2.28□□□□□ -2.04
COL6A5-202ENST00000312481 UBR4Q5T4S7 5183 aa2.27□□□□□ -2.05
COL6A5-202ENST00000312481 KRTAP6-2Q3LI66 62 aa2.26□□□□□ -2.05
COL6A5-202ENST00000312481 FAT4Q6V0I7 4981 aa2.26□□□□□ -2.05
COL6A5-202ENST00000312481 KRTAP5-9P26371 169 aa2.25□□□□□ -2.05
COL6A5-202ENST00000312481 KRTAP2-2Q9BYT5 123 aa2.23□□□□□ -2.05
COL6A5-202ENST00000312481 KRTAP6-1Q3LI64 71 aa2.23□□□□□ -2.05
COL6A5-202ENST00000312481 FSIP2Q5CZC0 6907 aa2.22□□□□□ -2.05
COL6A5-202ENST00000312481 KRTAP4-6Q9BYQ5 205 aa2.16□□□□□ -2.06
COL6A5-202ENST00000312481 SYNE1Q8NF91 8797 aaKnown RBP2.13□□□□□ -2.07
COL6A5-202ENST00000312481 KRTAP20-2Q3LI61 65 aa2.12□□□□□ -2.07
COL6A5-202ENST00000312481 KRTAP4-12Q9BQ66 201 aa2.11□□□□□ -2.07
COL6A5-202ENST00000312481 KRTAP4-2Q9BYR5 136 aa2.11□□□□□ -2.07
COL6A5-202ENST00000312481 KRTAP4-4Q9BYR3 166 aa2.09□□□□□ -2.08
COL6A5-202ENST00000312481 OBSCNQ5VST9 7968 aa2.05□□□□□ -2.08
COL6A5-202ENST00000312481 MUC2Q02817 5179 aa2□□□□□ -2.09
COL6A5-202ENST00000312481 SSPOA2VEC9 5147 aa2□□□□□ -2.09
COL6A5-202ENST00000312481 NEBP20929 6669 aa2□□□□□ -2.09
COL6A5-202ENST00000312481 KRTAP9-9Q9BYP9 154 aa1.97□□□□□ -2.09
COL6A5-202ENST00000312481 KRTAP5-5Q701N2 237 aaPredicted RBP1.97□□□□□ -2.09
COL6A5-202ENST00000312481 KRTAP5-4Q6L8H1 288 aa1.96□□□□□ -2.1
COL6A5-202ENST00000312481 USH2AO75445 5202 aa1.94□□□□□ -2.1
COL6A5-202ENST00000312481 MDN1Q9NU22 5596 aa1.9□□□□□ -2.11
COL6A5-202ENST00000312481 DSTQ03001 7570 aaKnown RBP1.88□□□□□ -2.11
COL6A5-202ENST00000312481 KRTAP4-11Q9BYQ6 195 aa1.87□□□□□ -2.11
COL6A5-202ENST00000312481 FCGBPQ9Y6R7 5405 aaPredicted RBP1.86□□□□□ -2.11
COL6A5-202ENST00000312481 MACF1Q9UPN3 7388 aaKnown RBP1.8□□□□□ -2.12
COL6A5-202ENST00000312481 KMT2DO14686 5537 aa1.77□□□□□ -2.13
COL6A5-202ENST00000312481 KRTAP5-3Q6L8H2 238 aa1.7□□□□□ -2.14
COL6A5-202ENST00000312481 KRTAP5-2Q701N4 177 aa1.69□□□□□ -2.14
COL6A5-202ENST00000312481 GPR98Q8WXG9 6306 aa1.69□□□□□ -2.14
COL6A5-202ENST00000312481 MUC5ACP98088 5654 aa1.68□□□□□ -2.14
COL6A5-202ENST00000312481 MUC19Q7Z5P9 8384 aa1.68□□□□□ -2.14
COL6A5-202ENST00000312481 AHNAK2Q8IVF2 5795 aa1.6□□□□□ -2.15
COL6A5-202ENST00000312481 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.59□□□□□ -2.16
COL6A5-202ENST00000312481 KRTAP5-10Q6L8G5 202 aa1.58□□□□□ -2.16
COL6A5-202ENST00000312481 KRTAP5-8O75690 187 aa1.56□□□□□ -2.16
COL6A5-202ENST00000312481 HMCN1Q96RW7 5635 aa1.55□□□□□ -2.16
COL6A5-202ENST00000312481 KRTAP5-11Q6L8G4 156 aa1.54□□□□□ -2.16
COL6A5-202ENST00000312481 MUC5BQ9HC84 5762 aaPredicted RBP1.5□□□□□ -2.17
COL6A5-202ENST00000312481 MUC12Q9UKN1 5478 aa1.5□□□□□ -2.17
COL6A5-202ENST00000312481 KRTAP5-1Q6L8H4 278 aa1.45□□□□□ -2.18
COL6A5-202ENST00000312481 PHGR1C9JFL3 82 aa1.44□□□□□ -2.18
COL6A5-202ENST00000312481 AHNAKQ09666 5890 aaKnown RBP1.44□□□□□ -2.18
COL6A5-202ENST00000312481 KRTAP5-7Q6L8G8 165 aa1.37□□□□□ -2.19
COL6A5-202ENST00000312481 KRTAP21-1Q3LI58 79 aa1.35□□□□□ -2.19
COL6A5-202ENST00000312481 KRTAP21-2Q3LI59 83 aa1.32□□□□□ -2.2
COL6A5-202ENST00000312481 MUC16Q8WXI7 14507 aa0.84□□□□□ -2.28
Retrieved 78 of 20,778 RNA–protein pairs in 112.4 ms