RNA–Protein interactions for RNA: ENST00000312481.11

COL6A5-202, Transcript of collagen type VI alpha 5 chain, humanhuman

TSL 1 (best)

Gene COL6A5, Length 9,226 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5-202ENST00000312481 NISCHQ9Y2I1 1504 aa15.5■□□□□ 0.07
COL6A5-202ENST00000312481 PELP1Q8IZL8 1130 aaKnown RBP14.24□□□□□ -0.13
COL6A5-202ENST00000312481 MYT1Q01538 1121 aa14.12□□□□□ -0.15
COL6A5-202ENST00000312481 ZEB1P37275 1124 aaPredicted RBP13.96□□□□□ -0.17
COL6A5-202ENST00000312481 CCDC180Q9P1Z9 1646 aa13.79□□□□□ -0.2
COL6A5-202ENST00000312481 DCAF8L2P0C7V8 631 aa13.72□□□□□ -0.21
COL6A5-202ENST00000312481 SUPT5HO00267 1087 aaKnown RBP13.55□□□□□ -0.24
COL6A5-202ENST00000312481 CENPBP07199 599 aaPredicted RBP13.54□□□□□ -0.24
COL6A5-202ENST00000312481 FAM9AQ8IZU1 332 aaPredicted RBP13.52□□□□□ -0.25
COL6A5-202ENST00000312481 APLP2Q06481 763 aa13.5□□□□□ -0.25
COL6A5-202ENST00000312481 CCER1Q8TC90 406 aaPredicted RBP13.48□□□□□ -0.25
COL6A5-202ENST00000312481 SHROOM4Q9ULL8 1493 aa13.23□□□□□ -0.29
COL6A5-202ENST00000312481 TRIM26Q12899 539 aaPredicted RBP13.15□□□□□ -0.3
COL6A5-202ENST00000312481 CLSPNQ9HAW4 1339 aa13.13□□□□□ -0.31
COL6A5-202ENST00000312481 TRIM41Q8WV44 630 aa13.09□□□□□ -0.31
COL6A5-202ENST00000312481 YTHDC1Q96MU7 727 aaKnown RBP13.08□□□□□ -0.32
COL6A5-202ENST00000312481 TTBK1Q5TCY1 1321 aaPredicted RBP13.04□□□□□ -0.32
COL6A5-202ENST00000312481 DCAF1Q9Y4B6 1507 aa13.01□□□□□ -0.33
COL6A5-202ENST00000312481 PCGF6Q9BYE7 350 aa13.01□□□□□ -0.33
COL6A5-202ENST00000312481 ZCCHC6Q5VYS8 1495 aaKnown RBP13□□□□□ -0.33
COL6A5-202ENST00000312481 NEFLP07196 543 aa13□□□□□ -0.33
COL6A5-202ENST00000312481 HRCP23327 699 aa12.99□□□□□ -0.33
COL6A5-202ENST00000312481 ERICH6Q7L0X2 663 aa12.89□□□□□ -0.35
COL6A5-202ENST00000312481 ACIN1Q9UKV3 1341 aaKnown RBP12.89□□□□□ -0.35
COL6A5-202ENST00000312481 NACADO15069 1562 aa12.77□□□□□ -0.37
COL6A5-202ENST00000312481 MYO15BQ96JP2 1530 aa12.75□□□□□ -0.37
COL6A5-202ENST00000312481 MYT1LQ9UL68 1186 aa12.72□□□□□ -0.37
COL6A5-202ENST00000312481 EEA1Q15075 1411 aa12.72□□□□□ -0.37
COL6A5-202ENST00000312481 UBTFP17480 764 aaKnown RBP12.71□□□□□ -0.37
COL6A5-202ENST00000312481 CHIC1Q5VXU3 224 aa12.71□□□□□ -0.37
COL6A5-202ENST00000312481 RB1CC1Q8TDY2 1594 aa12.64□□□□□ -0.39
COL6A5-202ENST00000312481 DAXXQ9UER7 740 aaPredicted RBP12.51□□□□□ -0.41
COL6A5-202ENST00000312481 ABCC9O60706 1549 aa12.48□□□□□ -0.41
COL6A5-202ENST00000312481 DIEXFQ68CQ4 756 aaKnown RBP12.45□□□□□ -0.42
COL6A5-202ENST00000312481 BAZ1AQ9NRL2 1556 aaPredicted RBP12.43□□□□□ -0.42
COL6A5-202ENST00000312481 SCRIBQ14160 1630 aa12.42□□□□□ -0.42
COL6A5-202ENST00000312481 RTL5Q5HYW3 569 aaPredicted RBP12.36□□□□□ -0.43
COL6A5-202ENST00000312481 ZNF316A6NFI3 1004 aaPredicted RBP12.29□□□□□ -0.44
COL6A5-202ENST00000312481 GOLGA3Q08378 1498 aa12.25□□□□□ -0.45
COL6A5-202ENST00000312481 EHMT2Q96KQ7 1210 aa12.23□□□□□ -0.45
COL6A5-202ENST00000312481 ANP32CO43423 234 aa12.23□□□□□ -0.45
COL6A5-202ENST00000312481 EIF5BO60841 1220 aaKnown RBP12.22□□□□□ -0.45
COL6A5-202ENST00000312481 CEP164Q9UPV0 1460 aa12.22□□□□□ -0.45
COL6A5-202ENST00000312481 CDK11AQ9UQ88 783 aaPredicted RBP12.2□□□□□ -0.46
COL6A5-202ENST00000312481 SMARCA2P51531 1590 aa12.19□□□□□ -0.46
COL6A5-202ENST00000312481 CSRNP3Q8WYN3 585 aa12.17□□□□□ -0.46
COL6A5-202ENST00000312481 TIMELESSQ9UNS1 1208 aa12.14□□□□□ -0.47
COL6A5-202ENST00000312481 RSF1Q96T23 1441 aaPredicted RBP12.14□□□□□ -0.47
COL6A5-202ENST00000312481 SLC24A1O60721 1099 aa12.13□□□□□ -0.47
COL6A5-202ENST00000312481 ATP1B4Q9UN42 357 aaPredicted RBP12.11□□□□□ -0.47
COL6A5-202ENST00000312481 FHAD1B1AJZ9 1412 aa12.11□□□□□ -0.47
COL6A5-202ENST00000312481 ANP32EQ9BTT0 268 aa12.1□□□□□ -0.47
COL6A5-202ENST00000312481 TNIKQ9UKE5 1360 aa12.1□□□□□ -0.47
COL6A5-202ENST00000312481 BAZ1BQ9UIG0 1483 aaKnown RBP12.09□□□□□ -0.47
COL6A5-202ENST00000312481 NEFMP07197 916 aa12.09□□□□□ -0.47
COL6A5-202ENST00000312481 ANP32AP39687 249 aaKnown RBP12.08□□□□□ -0.48
COL6A5-202ENST00000312481 LOC105371045A0A1W2PR82 267 aa12.06□□□□□ -0.48
COL6A5-202ENST00000312481 CLIP1P30622 1438 aa12.05□□□□□ -0.48
COL6A5-202ENST00000312481 GLIPR1L2Q4G1C9 344 aa12.05□□□□□ -0.48
COL6A5-202ENST00000312481 ARID4BQ4LE39 1312 aaPredicted RBP12.04□□□□□ -0.48
COL6A5-202ENST00000312481 TOP2AP11388 1531 aaKnown RBP12.04□□□□□ -0.48
COL6A5-202ENST00000312481 ERICH6BQ5W0A0 696 aa12.03□□□□□ -0.48
COL6A5-202ENST00000312481 TONSLQ96HA7 1378 aa12.02□□□□□ -0.49
COL6A5-202ENST00000312481 KIF27Q86VH2 1401 aa12.01□□□□□ -0.49
COL6A5-202ENST00000312481 HNRNPUL2Q1KMD3 747 aaKnown RBP11.99□□□□□ -0.49
COL6A5-202ENST00000312481 GTF3C3Q9Y5Q9 886 aa11.98□□□□□ -0.49
COL6A5-202ENST00000312481 CEP162Q5TB80 1403 aa11.97□□□□□ -0.49
COL6A5-202ENST00000312481 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.96□□□□□ -0.49
COL6A5-202ENST00000312481 WRNQ14191 1432 aaPredicted RBP eCLIP11.96□□□□□ -0.49
COL6A5-202ENST00000312481 ANP32BQ92688 251 aaKnown RBP11.95□□□□□ -0.5
COL6A5-202ENST00000312481 NEUROD1Q13562 356 aa11.95□□□□□ -0.5
COL6A5-202ENST00000312481 UPF2Q9HAU5 1272 aaKnown RBP11.94□□□□□ -0.5
COL6A5-202ENST00000312481 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.93□□□□□ -0.5
COL6A5-202ENST00000312481 ZBTB47Q9UFB7 747 aaPredicted RBP11.93□□□□□ -0.5
COL6A5-202ENST00000312481 SMARCA4P51532 1647 aa11.93□□□□□ -0.5
COL6A5-202ENST00000312481 FAM50AQ14320 339 aaKnown RBP11.9□□□□□ -0.5
COL6A5-202ENST00000312481 ABCC8Q09428 1581 aa11.88□□□□□ -0.51
COL6A5-202ENST00000312481 KIF21BO75037 1637 aa11.88□□□□□ -0.51
COL6A5-202ENST00000312481 VPS8Q8N3P4 1428 aa11.87□□□□□ -0.51
COL6A5-202ENST00000312481 RANGAP1P46060 587 aaPredicted RBP11.86□□□□□ -0.51
COL6A5-202ENST00000312481 DDRGK1Q96HY6 314 aa11.86□□□□□ -0.51
COL6A5-202ENST00000312481 CDCA8Q53HL2 280 aa11.83□□□□□ -0.52
COL6A5-202ENST00000312481 CFAP44Q96MT7 982 aa11.83□□□□□ -0.52
COL6A5-202ENST00000312481 CHMP4BQ9H444 224 aaKnown RBP11.81□□□□□ -0.52
COL6A5-202ENST00000312481 MTUS2Q5JR59 1369 aa11.81□□□□□ -0.52
COL6A5-202ENST00000312481 PRDM2Q13029 1718 aa11.8□□□□□ -0.52
COL6A5-202ENST00000312481 ERICH3Q5RHP9 1530 aa11.8□□□□□ -0.52
COL6A5-202ENST00000312481 FMN1Q68DA7 1419 aa11.8□□□□□ -0.52
COL6A5-202ENST00000312481 TRIM52Q96A61 297 aa11.78□□□□□ -0.52
COL6A5-202ENST00000312481 ITGAEP38570 1179 aa11.78□□□□□ -0.52
COL6A5-202ENST00000312481 CCER2I3L3R5 266 aa11.77□□□□□ -0.53
COL6A5-202ENST00000312481 CUX1P39880 1505 aa11.76□□□□□ -0.53
COL6A5-202ENST00000312481 WIZO95785 1651 aa11.75□□□□□ -0.53
COL6A5-202ENST00000312481 BECN1Q14457 450 aa11.75□□□□□ -0.53
COL6A5-202ENST00000312481 CCNB3Q8WWL7 1395 aa11.74□□□□□ -0.53
COL6A5-202ENST00000312481 ARHGAP35Q9NRY4 1499 aa11.73□□□□□ -0.53
COL6A5-202ENST00000312481 PHLDB1Q86UU1 1377 aa11.73□□□□□ -0.53
COL6A5-202ENST00000312481 MS4A1P11836 297 aa11.71□□□□□ -0.53
COL6A5-202ENST00000312481 PTMSP20962 102 aa11.71□□□□□ -0.53
COL6A5-202ENST00000312481 PPARGC1BQ86YN6 1023 aaKnown RBP11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms