RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 MT1MQ8N339 61 aa3.57□□□□□ -1.84
USP53-201ENST00000274030 FLGP20930 4061 aaPredicted RBP3.55□□□□□ -1.84
USP53-201ENST00000274030 UBR4Q5T4S7 5183 aa3.54□□□□□ -1.84
USP53-201ENST00000274030 TNXBP22105 4242 aa3.53□□□□□ -1.84
USP53-201ENST00000274030 MT3P25713 68 aa3.5□□□□□ -1.85
USP53-201ENST00000274030 KRTAP9-2Q9BYQ4 174 aa3.5□□□□□ -1.85
USP53-201ENST00000274030 PRM1P04553 51 aa3.49□□□□□ -1.85
USP53-201ENST00000274030 KRTAP19-6Q3LI70 58 aa3.48□□□□□ -1.85
USP53-201ENST00000274030 LCE1BQ5T7P3 118 aa3.48□□□□□ -1.85
USP53-201ENST00000274030 MUC2Q02817 5179 aa3.46□□□□□ -1.85
USP53-201ENST00000274030 LCE1DQ5T752 114 aa3.45□□□□□ -1.86
USP53-201ENST00000274030 FAT4Q6V0I7 4981 aa3.44□□□□□ -1.86
USP53-201ENST00000274030 RNF213Q63HN8 5207 aa3.42□□□□□ -1.86
USP53-201ENST00000274030 KRTAP4-9Q9BYQ8 210 aa3.4□□□□□ -1.87
USP53-201ENST00000274030 HMCN2Q8NDA2 5059 aa3.39□□□□□ -1.87
USP53-201ENST00000274030 SYNE2Q8WXH0 6885 aaKnown RBP3.39□□□□□ -1.87
USP53-201ENST00000274030 KRTAP19-7Q3SYF9 63 aa3.39□□□□□ -1.87
USP53-201ENST00000274030 LCE2AQ5TA79 106 aaPredicted RBP3.33□□□□□ -1.88
USP53-201ENST00000274030 OBSCNQ5VST9 7968 aa3.33□□□□□ -1.88
USP53-201ENST00000274030 MT1AP04731 61 aa3.29□□□□□ -1.88
USP53-201ENST00000274030 KRTAP2-3P0C7H8 128 aa3.27□□□□□ -1.89
USP53-201ENST00000274030 KRTAP2-4Q9BYR9 128 aa3.27□□□□□ -1.89
USP53-201ENST00000274030 KRTAP2-1Q9BYU5 128 aa3.27□□□□□ -1.89
USP53-201ENST00000274030 KRTAP9-6A0A140TA67 174 aa3.26□□□□□ -1.89
USP53-201ENST00000274030 LCE5AQ5TCM9 118 aa3.23□□□□□ -1.89
USP53-201ENST00000274030 KRTAP6-1Q3LI64 71 aa3.16□□□□□ -1.9
USP53-201ENST00000274030 KRTAP9-6A8MVA2 160 aa3.15□□□□□ -1.9
USP53-201ENST00000274030 FCGBPQ9Y6R7 5405 aaPredicted RBP3.14□□□□□ -1.91
USP53-201ENST00000274030 KRTAP6-2Q3LI66 62 aa3.14□□□□□ -1.91
USP53-201ENST00000274030 KRTAP20-1Q3LI63 56 aa3.14□□□□□ -1.91
USP53-201ENST00000274030 KRTAP9-7A8MTY7 169 aa3.13□□□□□ -1.91
USP53-201ENST00000274030 DSTQ03001 7570 aaKnown RBP3.1□□□□□ -1.91
USP53-201ENST00000274030 USH2AO75445 5202 aa3.06□□□□□ -1.92
USP53-201ENST00000274030 LCE1AQ5T7P2 110 aa3.05□□□□□ -1.92
USP53-201ENST00000274030 KRTAP9-4Q9BYQ2 154 aa3.03□□□□□ -1.92
USP53-201ENST00000274030 KRTAP6-3Q3LI67 103 aa3.03□□□□□ -1.92
USP53-201ENST00000274030 KRTAP9-1A8MXZ3 250 aaPredicted RBP3□□□□□ -1.93
USP53-201ENST00000274030 MACF1Q9UPN3 7388 aaKnown RBP3□□□□□ -1.93
USP53-201ENST00000274030 KMT2DO14686 5537 aa2.97□□□□□ -1.93
USP53-201ENST00000274030 LCE1CQ5T751 118 aa2.95□□□□□ -1.94
USP53-201ENST00000274030 LCE1EQ5T753 118 aa2.95□□□□□ -1.94
USP53-201ENST00000274030 LCE1FQ5T754 118 aa2.95□□□□□ -1.94
USP53-201ENST00000274030 LCE4AQ5TA78 99 aa2.93□□□□□ -1.94
USP53-201ENST00000274030 KRTAP2-2Q9BYT5 123 aa2.92□□□□□ -1.94
USP53-201ENST00000274030 MUC19Q7Z5P9 8384 aa2.76□□□□□ -1.97
USP53-201ENST00000274030 MUC12Q9UKN1 5478 aa2.73□□□□□ -1.97
USP53-201ENST00000274030 SSPOA2VEC9 5147 aa2.69□□□□□ -1.98
USP53-201ENST00000274030 MDN1Q9NU22 5596 aa2.66□□□□□ -1.98
USP53-201ENST00000274030 NEBP20929 6669 aa2.65□□□□□ -1.98
USP53-201ENST00000274030 KRTAP4-6Q9BYQ5 205 aa2.64□□□□□ -1.99
USP53-201ENST00000274030 KRTAP9-9Q9BYP9 154 aa2.63□□□□□ -1.99
USP53-201ENST00000274030 KRTAP4-11Q9BYQ6 195 aa2.62□□□□□ -1.99
USP53-201ENST00000274030 KRTAP5-9P26371 169 aa2.54□□□□□ -2
USP53-201ENST00000274030 KRTAP20-2Q3LI61 65 aa2.52□□□□□ -2.01
USP53-201ENST00000274030 KRTAP4-4Q9BYR3 166 aa2.49□□□□□ -2.01
USP53-201ENST00000274030 KRTAP4-12Q9BQ66 201 aa2.44□□□□□ -2.02
USP53-201ENST00000274030 KRTAP4-2Q9BYR5 136 aa2.44□□□□□ -2.02
USP53-201ENST00000274030 GPR98Q8WXG9 6306 aa2.44□□□□□ -2.02
USP53-201ENST00000274030 KRTAP5-5Q701N2 237 aaPredicted RBP2.29□□□□□ -2.04
USP53-201ENST00000274030 MUC5ACP98088 5654 aa2.25□□□□□ -2.05
USP53-201ENST00000274030 KRTAP5-4Q6L8H1 288 aa2.25□□□□□ -2.05
USP53-201ENST00000274030 HMCN1Q96RW7 5635 aa2.13□□□□□ -2.07
USP53-201ENST00000274030 KRTAP5-3Q6L8H2 238 aa2.03□□□□□ -2.08
USP53-201ENST00000274030 KRTAP5-2Q701N4 177 aa2.01□□□□□ -2.09
USP53-201ENST00000274030 AHNAK2Q8IVF2 5795 aa1.95□□□□□ -2.1
USP53-201ENST00000274030 KRTAP5-8O75690 187 aa1.9□□□□□ -2.1
USP53-201ENST00000274030 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.9□□□□□ -2.11
USP53-201ENST00000274030 KRTAP5-10Q6L8G5 202 aa1.82□□□□□ -2.12
USP53-201ENST00000274030 PHGR1C9JFL3 82 aa1.75□□□□□ -2.13
USP53-201ENST00000274030 MUC5BQ9HC84 5762 aaPredicted RBP1.7□□□□□ -2.14
USP53-201ENST00000274030 AHNAKQ09666 5890 aaKnown RBP1.7□□□□□ -2.14
USP53-201ENST00000274030 KRTAP5-1Q6L8H4 278 aa1.64□□□□□ -2.15
USP53-201ENST00000274030 KRTAP5-11Q6L8G4 156 aa1.58□□□□□ -2.16
USP53-201ENST00000274030 KRTAP21-2Q3LI59 83 aa1.55□□□□□ -2.16
USP53-201ENST00000274030 KRTAP21-1Q3LI58 79 aa1.37□□□□□ -2.19
USP53-201ENST00000274030 KRTAP5-7Q6L8G8 165 aa1.24□□□□□ -2.21
USP53-201ENST00000274030 MUC16Q8WXI7 14507 aa1.04□□□□□ -2.24
Retrieved 77 of 20,778 RNA–protein pairs in 69.9 ms