RNA–Protein interactions for RNA: ENST00000260327.8

CTDSPL2-201, Transcript of CTD small phosphatase like 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDSPL2, Length 6,828 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSPL2-201ENST00000260327 KRTAP4-3Q9BYR4 195 aa3.05□□□□□ -1.92
CTDSPL2-201ENST00000260327 EPPK1P58107 5090 aaKnown RBP3.04□□□□□ -1.92
CTDSPL2-201ENST00000260327 UBR4Q5T4S7 5183 aa3□□□□□ -1.93
CTDSPL2-201ENST00000260327 ABCA13Q86UQ4 5058 aa3□□□□□ -1.93
CTDSPL2-201ENST00000260327 LCE1DQ5T752 114 aa2.99□□□□□ -1.93
CTDSPL2-201ENST00000260327 MUC2Q02817 5179 aa2.98□□□□□ -1.93
CTDSPL2-201ENST00000260327 LCE5AQ5TCM9 118 aa2.98□□□□□ -1.93
CTDSPL2-201ENST00000260327 MT1MQ8N339 61 aa2.98□□□□□ -1.93
CTDSPL2-201ENST00000260327 LCE1CQ5T751 118 aa2.97□□□□□ -1.93
CTDSPL2-201ENST00000260327 LCE1EQ5T753 118 aa2.97□□□□□ -1.93
CTDSPL2-201ENST00000260327 LCE1FQ5T754 118 aa2.97□□□□□ -1.93
CTDSPL2-201ENST00000260327 LCE1AQ5T7P2 110 aa2.97□□□□□ -1.93
CTDSPL2-201ENST00000260327 FSIP2Q5CZC0 6907 aa2.96□□□□□ -1.94
CTDSPL2-201ENST00000260327 MT3P25713 68 aa2.96□□□□□ -1.94
CTDSPL2-201ENST00000260327 FAT4Q6V0I7 4981 aa2.96□□□□□ -1.94
CTDSPL2-201ENST00000260327 KRTAP4-9Q9BYQ8 210 aa2.95□□□□□ -1.94
CTDSPL2-201ENST00000260327 KRTAP19-7Q3SYF9 63 aa2.94□□□□□ -1.94
CTDSPL2-201ENST00000260327 SYNE1Q8NF91 8797 aaKnown RBP2.93□□□□□ -1.94
CTDSPL2-201ENST00000260327 KRTAP2-3P0C7H8 128 aa2.9□□□□□ -1.95
CTDSPL2-201ENST00000260327 KRTAP2-4Q9BYR9 128 aa2.9□□□□□ -1.95
CTDSPL2-201ENST00000260327 KRTAP2-1Q9BYU5 128 aa2.9□□□□□ -1.95
CTDSPL2-201ENST00000260327 KRTAP9-6A8MVA2 160 aa2.88□□□□□ -1.95
CTDSPL2-201ENST00000260327 RNF213Q63HN8 5207 aa2.86□□□□□ -1.95
CTDSPL2-201ENST00000260327 KRTAP19-6Q3LI70 58 aa2.85□□□□□ -1.95
CTDSPL2-201ENST00000260327 SYNE2Q8WXH0 6885 aaKnown RBP2.81□□□□□ -1.96
CTDSPL2-201ENST00000260327 LCE4AQ5TA78 99 aa2.79□□□□□ -1.96
CTDSPL2-201ENST00000260327 KRTAP20-1Q3LI63 56 aa2.78□□□□□ -1.96
CTDSPL2-201ENST00000260327 LCE2AQ5TA79 106 aaPredicted RBP2.76□□□□□ -1.97
CTDSPL2-201ENST00000260327 MT1AP04731 61 aa2.73□□□□□ -1.97
CTDSPL2-201ENST00000260327 KRTAP9-7A8MTY7 169 aa2.72□□□□□ -1.97
CTDSPL2-201ENST00000260327 KRTAP6-2Q3LI66 62 aa2.71□□□□□ -1.97
CTDSPL2-201ENST00000260327 KMT2DO14686 5537 aa2.71□□□□□ -1.98
CTDSPL2-201ENST00000260327 KRTAP6-1Q3LI64 71 aa2.68□□□□□ -1.98
CTDSPL2-201ENST00000260327 FCGBPQ9Y6R7 5405 aaPredicted RBP2.68□□□□□ -1.98
CTDSPL2-201ENST00000260327 OBSCNQ5VST9 7968 aa2.67□□□□□ -1.98
CTDSPL2-201ENST00000260327 KRTAP9-2Q9BYQ4 174 aa2.62□□□□□ -1.99
CTDSPL2-201ENST00000260327 DSTQ03001 7570 aaKnown RBP2.62□□□□□ -1.99
CTDSPL2-201ENST00000260327 KRTAP9-6A0A140TA67 174 aa2.59□□□□□ -1.99
CTDSPL2-201ENST00000260327 USH2AO75445 5202 aa2.55□□□□□ -2
CTDSPL2-201ENST00000260327 KRTAP9-4Q9BYQ2 154 aa2.54□□□□□ -2
CTDSPL2-201ENST00000260327 KRTAP2-2Q9BYT5 123 aa2.45□□□□□ -2.02
CTDSPL2-201ENST00000260327 KRTAP9-9Q9BYP9 154 aa2.43□□□□□ -2.02
CTDSPL2-201ENST00000260327 MUC12Q9UKN1 5478 aa2.39□□□□□ -2.03
CTDSPL2-201ENST00000260327 SSPOA2VEC9 5147 aa2.38□□□□□ -2.03
CTDSPL2-201ENST00000260327 KRTAP20-2Q3LI61 65 aa2.38□□□□□ -2.03
CTDSPL2-201ENST00000260327 KRTAP4-11Q9BYQ6 195 aa2.33□□□□□ -2.04
CTDSPL2-201ENST00000260327 KRTAP6-3Q3LI67 103 aa2.32□□□□□ -2.04
CTDSPL2-201ENST00000260327 MACF1Q9UPN3 7388 aaKnown RBP2.3□□□□□ -2.04
CTDSPL2-201ENST00000260327 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.27□□□□□ -2.05
CTDSPL2-201ENST00000260327 MUC19Q7Z5P9 8384 aa2.17□□□□□ -2.06
CTDSPL2-201ENST00000260327 KRTAP5-5Q701N2 237 aaPredicted RBP2.17□□□□□ -2.06
CTDSPL2-201ENST00000260327 KRTAP4-6Q9BYQ5 205 aa2.15□□□□□ -2.06
CTDSPL2-201ENST00000260327 KRTAP5-9P26371 169 aa2.11□□□□□ -2.07
CTDSPL2-201ENST00000260327 KRTAP4-12Q9BQ66 201 aa2.06□□□□□ -2.08
CTDSPL2-201ENST00000260327 KRTAP4-2Q9BYR5 136 aa2.06□□□□□ -2.08
CTDSPL2-201ENST00000260327 KRTAP4-4Q9BYR3 166 aa2.05□□□□□ -2.08
CTDSPL2-201ENST00000260327 MDN1Q9NU22 5596 aa2□□□□□ -2.09
CTDSPL2-201ENST00000260327 NEBP20929 6669 aa1.99□□□□□ -2.09
CTDSPL2-201ENST00000260327 KRTAP5-4Q6L8H1 288 aa1.83□□□□□ -2.12
CTDSPL2-201ENST00000260327 MUC5ACP98088 5654 aa1.81□□□□□ -2.12
CTDSPL2-201ENST00000260327 PHGR1C9JFL3 82 aa1.72□□□□□ -2.13
CTDSPL2-201ENST00000260327 HMCN1Q96RW7 5635 aa1.66□□□□□ -2.14
CTDSPL2-201ENST00000260327 KRTAP5-10Q6L8G5 202 aa1.66□□□□□ -2.14
CTDSPL2-201ENST00000260327 KRTAP5-3Q6L8H2 238 aa1.59□□□□□ -2.16
CTDSPL2-201ENST00000260327 GPR98Q8WXG9 6306 aa1.55□□□□□ -2.16
CTDSPL2-201ENST00000260327 KRTAP5-2Q701N4 177 aa1.55□□□□□ -2.16
CTDSPL2-201ENST00000260327 KRTAP5-8O75690 187 aa1.49□□□□□ -2.17
CTDSPL2-201ENST00000260327 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.46□□□□□ -2.18
CTDSPL2-201ENST00000260327 KRTAP5-1Q6L8H4 278 aa1.45□□□□□ -2.18
CTDSPL2-201ENST00000260327 AHNAK2Q8IVF2 5795 aa1.42□□□□□ -2.18
CTDSPL2-201ENST00000260327 KRTAP21-2Q3LI59 83 aa1.4□□□□□ -2.18
CTDSPL2-201ENST00000260327 MUC5BQ9HC84 5762 aaPredicted RBP1.4□□□□□ -2.19
CTDSPL2-201ENST00000260327 KRTAP21-1Q3LI58 79 aa1.35□□□□□ -2.19
CTDSPL2-201ENST00000260327 KRTAP5-11Q6L8G4 156 aa1.34□□□□□ -2.2
CTDSPL2-201ENST00000260327 AHNAKQ09666 5890 aaKnown RBP1.24□□□□□ -2.21
CTDSPL2-201ENST00000260327 KRTAP5-7Q6L8G8 165 aa1.12□□□□□ -2.23
CTDSPL2-201ENST00000260327 MUC16Q8WXI7 14507 aa0.9□□□□□ -2.27
Retrieved 77 of 20,778 RNA–protein pairs in 6.3 ms