RNA–Protein interactions for RNA: ENST00000254667.7

PTPRE-201, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRE, Length 5,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-201ENST00000254667 MT3P25713 68 aa5.9□□□□□ -1.46
PTPRE-201ENST00000254667 LCE2AQ5TA79 106 aaPredicted RBP5.89□□□□□ -1.47
PTPRE-201ENST00000254667 RNF213Q63HN8 5207 aa5.77□□□□□ -1.49
PTPRE-201ENST00000254667 MT4P47944 62 aa5.73□□□□□ -1.49
PTPRE-201ENST00000254667 FAT4Q6V0I7 4981 aa5.73□□□□□ -1.49
PTPRE-201ENST00000254667 KRTAP19-7Q3SYF9 63 aa5.73□□□□□ -1.49
PTPRE-201ENST00000254667 LOC100996750A0A140TA64 210 aa5.7□□□□□ -1.5
PTPRE-201ENST00000254667 KRTAP4-3Q9BYR4 195 aa5.68□□□□□ -1.5
PTPRE-201ENST00000254667 UBR4Q5T4S7 5183 aa5.64□□□□□ -1.51
PTPRE-201ENST00000254667 MT1AP04731 61 aa5.63□□□□□ -1.51
PTPRE-201ENST00000254667 KRTAP9-6A0A140TA67 174 aa5.62□□□□□ -1.51
PTPRE-201ENST00000254667 HMCN2Q8NDA2 5059 aa5.57□□□□□ -1.52
PTPRE-201ENST00000254667 SYNE1Q8NF91 8797 aaKnown RBP5.53□□□□□ -1.52
PTPRE-201ENST00000254667 PRM1P04553 51 aa5.53□□□□□ -1.52
PTPRE-201ENST00000254667 LCE1AQ5T7P2 110 aa5.49□□□□□ -1.53
PTPRE-201ENST00000254667 LCE1DQ5T752 114 aa5.47□□□□□ -1.53
PTPRE-201ENST00000254667 LCE1BQ5T7P3 118 aa5.46□□□□□ -1.54
PTPRE-201ENST00000254667 KRTAP2-3P0C7H8 128 aa5.43□□□□□ -1.54
PTPRE-201ENST00000254667 KRTAP2-4Q9BYR9 128 aa5.43□□□□□ -1.54
PTPRE-201ENST00000254667 KRTAP2-1Q9BYU5 128 aa5.43□□□□□ -1.54
PTPRE-201ENST00000254667 KRTAP6-3Q3LI67 103 aa5.41□□□□□ -1.54
PTPRE-201ENST00000254667 FSIP2Q5CZC0 6907 aa5.39□□□□□ -1.55
PTPRE-201ENST00000254667 KRTAP20-1Q3LI63 56 aa5.36□□□□□ -1.55
PTPRE-201ENST00000254667 MUC2Q02817 5179 aa5.32□□□□□ -1.56
PTPRE-201ENST00000254667 KRTAP9-7A8MTY7 169 aa5.31□□□□□ -1.56
PTPRE-201ENST00000254667 LCE5AQ5TCM9 118 aa5.27□□□□□ -1.57
PTPRE-201ENST00000254667 KRTAP4-9Q9BYQ8 210 aa5.23□□□□□ -1.57
PTPRE-201ENST00000254667 SYNE2Q8WXH0 6885 aaKnown RBP5.2□□□□□ -1.58
PTPRE-201ENST00000254667 LCE4AQ5TA78 99 aa5.19□□□□□ -1.58
PTPRE-201ENST00000254667 KRTAP6-1Q3LI64 71 aa5.18□□□□□ -1.58
PTPRE-201ENST00000254667 KRTAP9-4Q9BYQ2 154 aa5.17□□□□□ -1.58
PTPRE-201ENST00000254667 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.17□□□□□ -1.58
PTPRE-201ENST00000254667 KRTAP9-6A8MVA2 160 aa5.13□□□□□ -1.59
PTPRE-201ENST00000254667 KRTAP6-2Q3LI66 62 aa5.11□□□□□ -1.59
PTPRE-201ENST00000254667 KRTAP2-2Q9BYT5 123 aa5.07□□□□□ -1.6
PTPRE-201ENST00000254667 OBSCNQ5VST9 7968 aa5.06□□□□□ -1.6
PTPRE-201ENST00000254667 USH2AO75445 5202 aa4.77□□□□□ -1.65
PTPRE-201ENST00000254667 KRTAP5-9P26371 169 aa4.65□□□□□ -1.67
PTPRE-201ENST00000254667 LCE1CQ5T751 118 aa4.62□□□□□ -1.67
PTPRE-201ENST00000254667 LCE1EQ5T753 118 aa4.62□□□□□ -1.67
PTPRE-201ENST00000254667 LCE1FQ5T754 118 aa4.62□□□□□ -1.67
PTPRE-201ENST00000254667 FCGBPQ9Y6R7 5405 aaPredicted RBP4.6□□□□□ -1.67
PTPRE-201ENST00000254667 NEBP20929 6669 aa4.48□□□□□ -1.69
PTPRE-201ENST00000254667 KRTAP9-9Q9BYP9 154 aa4.44□□□□□ -1.7
PTPRE-201ENST00000254667 DSTQ03001 7570 aaKnown RBP4.43□□□□□ -1.7
PTPRE-201ENST00000254667 SSPOA2VEC9 5147 aa4.42□□□□□ -1.7
PTPRE-201ENST00000254667 MACF1Q9UPN3 7388 aaKnown RBP4.41□□□□□ -1.7
PTPRE-201ENST00000254667 KMT2DO14686 5537 aa4.32□□□□□ -1.72
PTPRE-201ENST00000254667 KRTAP20-2Q3LI61 65 aa4.32□□□□□ -1.72
PTPRE-201ENST00000254667 KRTAP4-6Q9BYQ5 205 aa4.29□□□□□ -1.72
PTPRE-201ENST00000254667 MUC12Q9UKN1 5478 aa4.12□□□□□ -1.75
PTPRE-201ENST00000254667 MDN1Q9NU22 5596 aa4.12□□□□□ -1.75
PTPRE-201ENST00000254667 KRTAP5-4Q6L8H1 288 aa4.07□□□□□ -1.76
PTPRE-201ENST00000254667 KRTAP4-11Q9BYQ6 195 aa4.03□□□□□ -1.76
PTPRE-201ENST00000254667 MUC19Q7Z5P9 8384 aa3.95□□□□□ -1.78
PTPRE-201ENST00000254667 GPR98Q8WXG9 6306 aa3.93□□□□□ -1.78
PTPRE-201ENST00000254667 KRTAP5-5Q701N2 237 aaPredicted RBP3.87□□□□□ -1.79
PTPRE-201ENST00000254667 KRTAP4-4Q9BYR3 166 aa3.73□□□□□ -1.81
PTPRE-201ENST00000254667 KRTAP4-12Q9BQ66 201 aa3.72□□□□□ -1.81
PTPRE-201ENST00000254667 KRTAP4-2Q9BYR5 136 aa3.72□□□□□ -1.81
PTPRE-201ENST00000254667 KRTAP5-3Q6L8H2 238 aa3.56□□□□□ -1.84
PTPRE-201ENST00000254667 MUC5ACP98088 5654 aa3.43□□□□□ -1.86
PTPRE-201ENST00000254667 AHNAK2Q8IVF2 5795 aa3.39□□□□□ -1.87
PTPRE-201ENST00000254667 HMCN1Q96RW7 5635 aa3.3□□□□□ -1.88
PTPRE-201ENST00000254667 KRTAP5-2Q701N4 177 aa3.21□□□□□ -1.9
PTPRE-201ENST00000254667 KRTAP5-8O75690 187 aa3.2□□□□□ -1.9
PTPRE-201ENST00000254667 KRTAP5-10Q6L8G5 202 aa3.11□□□□□ -1.91
PTPRE-201ENST00000254667 MUC5BQ9HC84 5762 aaPredicted RBP2.94□□□□□ -1.94
PTPRE-201ENST00000254667 KRTAP5-11Q6L8G4 156 aa2.9□□□□□ -1.95
PTPRE-201ENST00000254667 PHGR1C9JFL3 82 aa2.84□□□□□ -1.96
PTPRE-201ENST00000254667 AHNAKQ09666 5890 aaKnown RBP2.79□□□□□ -1.96
PTPRE-201ENST00000254667 KRTAP5-1Q6L8H4 278 aa2.78□□□□□ -1.97
PTPRE-201ENST00000254667 KRTAP21-2Q3LI59 83 aa2.68□□□□□ -1.98
PTPRE-201ENST00000254667 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.59□□□□□ -1.99
PTPRE-201ENST00000254667 KRTAP21-1Q3LI58 79 aa2.38□□□□□ -2.03
PTPRE-201ENST00000254667 KRTAP5-7Q6L8G8 165 aa2.35□□□□□ -2.03
PTPRE-201ENST00000254667 MUC16Q8WXI7 14507 aa1.69□□□□□ -2.14
Retrieved 77 of 20,778 RNA–protein pairs in 18.9 ms