RNA–Protein interactions for RNA: ENST00000243326.9

RIF1-201, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene RIF1, Length 15,003 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-201ENST00000243326 KRTAP9-7A8MTY7 169 aa2.19□□□□□ -2.06
RIF1-201ENST00000243326 KRTAP19-7Q3SYF9 63 aa2.17□□□□□ -2.06
RIF1-201ENST00000243326 KRTAP6-2Q3LI66 62 aa2.15□□□□□ -2.07
RIF1-201ENST00000243326 HERC1Q15751 4861 aa2.15□□□□□ -2.07
RIF1-201ENST00000243326 HMCN2Q8NDA2 5059 aa2.15□□□□□ -2.07
RIF1-201ENST00000243326 KMT2CQ8NEZ4 4911 aaKnown RBP2.14□□□□□ -2.07
RIF1-201ENST00000243326 KRTAP2-3P0C7H8 128 aa2.14□□□□□ -2.07
RIF1-201ENST00000243326 KRTAP2-4Q9BYR9 128 aa2.14□□□□□ -2.07
RIF1-201ENST00000243326 KRTAP2-1Q9BYU5 128 aa2.14□□□□□ -2.07
RIF1-201ENST00000243326 HERC2O95714 4834 aa2.14□□□□□ -2.07
RIF1-201ENST00000243326 EPPK1P58107 5090 aaKnown RBP2.13□□□□□ -2.07
RIF1-201ENST00000243326 KRTAP6-1Q3LI64 71 aa2.09□□□□□ -2.07
RIF1-201ENST00000243326 RYR2Q92736 4967 aa2.09□□□□□ -2.07
RIF1-201ENST00000243326 SYNE2Q8WXH0 6885 aaKnown RBP2.08□□□□□ -2.08
RIF1-201ENST00000243326 LCE5AQ5TCM9 118 aa2.07□□□□□ -2.08
RIF1-201ENST00000243326 KRTAP19-6Q3LI70 58 aa2.04□□□□□ -2.08
RIF1-201ENST00000243326 MT1AP04731 61 aa2.04□□□□□ -2.08
RIF1-201ENST00000243326 KRTAP9-2Q9BYQ4 174 aa2.03□□□□□ -2.08
RIF1-201ENST00000243326 RNF213Q63HN8 5207 aa2.03□□□□□ -2.09
RIF1-201ENST00000243326 UBR4Q5T4S7 5183 aa1.97□□□□□ -2.09
RIF1-201ENST00000243326 ABCA13Q86UQ4 5058 aa1.95□□□□□ -2.1
RIF1-201ENST00000243326 MUC12Q9UKN1 5478 aa1.94□□□□□ -2.1
RIF1-201ENST00000243326 KIAA1109Q2LD37 5005 aa1.93□□□□□ -2.1
RIF1-201ENST00000243326 KRTAP4-11Q9BYQ6 195 aa1.93□□□□□ -2.1
RIF1-201ENST00000243326 LCE1CQ5T751 118 aa1.92□□□□□ -2.1
RIF1-201ENST00000243326 LCE1EQ5T753 118 aa1.92□□□□□ -2.1
RIF1-201ENST00000243326 LCE1FQ5T754 118 aa1.92□□□□□ -2.1
RIF1-201ENST00000243326 LCE1AQ5T7P2 110 aa1.92□□□□□ -2.1
RIF1-201ENST00000243326 MDN1Q9NU22 5596 aa1.92□□□□□ -2.1
RIF1-201ENST00000243326 FAT4Q6V0I7 4981 aa1.91□□□□□ -2.1
RIF1-201ENST00000243326 KMT2DO14686 5537 aa1.91□□□□□ -2.1
RIF1-201ENST00000243326 KRTAP9-4Q9BYQ2 154 aa1.91□□□□□ -2.1
RIF1-201ENST00000243326 LCE2AQ5TA79 106 aaPredicted RBP1.88□□□□□ -2.11
RIF1-201ENST00000243326 LCE4AQ5TA78 99 aa1.88□□□□□ -2.11
RIF1-201ENST00000243326 SYNE1Q8NF91 8797 aaKnown RBP1.87□□□□□ -2.11
RIF1-201ENST00000243326 KRTAP2-2Q9BYT5 123 aa1.86□□□□□ -2.11
RIF1-201ENST00000243326 GPR98Q8WXG9 6306 aa1.83□□□□□ -2.12
RIF1-201ENST00000243326 FCGBPQ9Y6R7 5405 aaPredicted RBP1.82□□□□□ -2.12
RIF1-201ENST00000243326 USH2AO75445 5202 aa1.8□□□□□ -2.12
RIF1-201ENST00000243326 KRTAP4-4Q9BYR3 166 aa1.79□□□□□ -2.12
RIF1-201ENST00000243326 FSIP2Q5CZC0 6907 aa1.78□□□□□ -2.12
RIF1-201ENST00000243326 KRTAP20-1Q3LI63 56 aa1.78□□□□□ -2.12
RIF1-201ENST00000243326 MUC2Q02817 5179 aa1.78□□□□□ -2.12
RIF1-201ENST00000243326 KRTAP9-6A0A140TA67 174 aa1.77□□□□□ -2.13
RIF1-201ENST00000243326 KRTAP4-12Q9BQ66 201 aa1.71□□□□□ -2.14
RIF1-201ENST00000243326 KRTAP4-2Q9BYR5 136 aa1.71□□□□□ -2.14
RIF1-201ENST00000243326 KRTAP4-6Q9BYQ5 205 aa1.71□□□□□ -2.14
RIF1-201ENST00000243326 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.7□□□□□ -2.14
RIF1-201ENST00000243326 KRTAP5-5Q701N2 237 aaPredicted RBP1.69□□□□□ -2.14
RIF1-201ENST00000243326 KRTAP6-3Q3LI67 103 aa1.67□□□□□ -2.14
RIF1-201ENST00000243326 KRTAP20-2Q3LI61 65 aa1.66□□□□□ -2.14
RIF1-201ENST00000243326 OBSCNQ5VST9 7968 aa1.61□□□□□ -2.15
RIF1-201ENST00000243326 KRTAP9-9Q9BYP9 154 aa1.54□□□□□ -2.16
RIF1-201ENST00000243326 MUC5BQ9HC84 5762 aaPredicted RBP1.53□□□□□ -2.16
RIF1-201ENST00000243326 NEBP20929 6669 aa1.52□□□□□ -2.17
RIF1-201ENST00000243326 DSTQ03001 7570 aaKnown RBP1.49□□□□□ -2.17
RIF1-201ENST00000243326 SSPOA2VEC9 5147 aa1.49□□□□□ -2.17
RIF1-201ENST00000243326 MUC5ACP98088 5654 aa1.48□□□□□ -2.17
RIF1-201ENST00000243326 HMCN1Q96RW7 5635 aa1.47□□□□□ -2.17
RIF1-201ENST00000243326 AHNAK2Q8IVF2 5795 aa1.38□□□□□ -2.19
RIF1-201ENST00000243326 KRTAP5-9P26371 169 aa1.37□□□□□ -2.19
RIF1-201ENST00000243326 MUC19Q7Z5P9 8384 aa1.37□□□□□ -2.19
RIF1-201ENST00000243326 KRTAP5-4Q6L8H1 288 aa1.36□□□□□ -2.19
RIF1-201ENST00000243326 MACF1Q9UPN3 7388 aaKnown RBP1.35□□□□□ -2.19
RIF1-201ENST00000243326 KRTAP5-2Q701N4 177 aa1.25□□□□□ -2.21
RIF1-201ENST00000243326 KRTAP5-10Q6L8G5 202 aa1.2□□□□□ -2.22
RIF1-201ENST00000243326 AHNAKQ09666 5890 aaKnown RBP1.2□□□□□ -2.22
RIF1-201ENST00000243326 KRTAP5-3Q6L8H2 238 aa1.14□□□□□ -2.23
RIF1-201ENST00000243326 KRTAP5-8O75690 187 aa1.12□□□□□ -2.23
RIF1-201ENST00000243326 KRTAP5-1Q6L8H4 278 aa1.1□□□□□ -2.23
RIF1-201ENST00000243326 PHGR1C9JFL3 82 aa1.03□□□□□ -2.24
RIF1-201ENST00000243326 KRTAP21-2Q3LI59 83 aa1□□□□□ -2.25
RIF1-201ENST00000243326 KRTAP21-1Q3LI58 79 aa0.95□□□□□ -2.26
RIF1-201ENST00000243326 KRTAP5-11Q6L8G4 156 aa0.86□□□□□ -2.27
RIF1-201ENST00000243326 MUC16Q8WXI7 14507 aa0.84□□□□□ -2.27
RIF1-201ENST00000243326 KRTAP5-7Q6L8G8 165 aa0.84□□□□□ -2.28
RIF1-201ENST00000243326 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.78□□□□□ -2.28
Retrieved 77 of 20,778 RNA–protein pairs in 12.6 ms