RNA–Protein interactions for RNA: ENST00000627317.1

PNKP-221, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 767 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-221ENST00000627317 C20orf197Q8N268 126 aa7.05□□□□□ -1.28
PNKP-221ENST00000627317 SNURFQ9Y675 71 aa7.05□□□□□ -1.28
PNKP-221ENST00000627317 LCA10Q71F78 164 aa7.04□□□□□ -1.28
PNKP-221ENST00000627317 KRTAP9-3Q9BYQ3 159 aa7.01□□□□□ -1.29
PNKP-221ENST00000627317 SSPOA2VEC9 5147 aa7.01□□□□□ -1.29
PNKP-221ENST00000627317 COX7CP15954 63 aa7□□□□□ -1.29
PNKP-221ENST00000627317 CSAG1Q6PB30 78 aa7□□□□□ -1.29
PNKP-221ENST00000627317 DMAC1Q96GE9 116 aa6.99□□□□□ -1.29
PNKP-221ENST00000627317 LCE2BO14633 110 aa6.97□□□□□ -1.29
PNKP-221ENST00000627317 KRTAP10-10P60014 251 aa6.96□□□□□ -1.3
PNKP-221ENST00000627317 ANAPC13Q9BS18 74 aa6.96□□□□□ -1.3
PNKP-221ENST00000627317 NDUFC1O43677 76 aa6.95□□□□□ -1.3
PNKP-221ENST00000627317 KRTAP3-3Q9BYR6 98 aa6.94□□□□□ -1.3
PNKP-221ENST00000627317 SPANXA2-OT1Q8N9U9 137 aa6.9□□□□□ -1.3
PNKP-221ENST00000627317 ACYP2P14621 99 aa6.89□□□□□ -1.31
PNKP-221ENST00000627317 FCGBPQ9Y6R7 5405 aaPredicted RBP6.84□□□□□ -1.31
PNKP-221ENST00000627317 CHKB-CPT1BH3BT56 60 aa6.81□□□□□ -1.32
PNKP-221ENST00000627317 KRTAP19-1Q8IUB9 90 aa6.81□□□□□ -1.32
PNKP-221ENST00000627317 CYSTM1Q9H1C7 97 aa6.81□□□□□ -1.32
PNKP-221ENST00000627317 H7BZZ5 65 aa6.8□□□□□ -1.32
PNKP-221ENST00000627317 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.79□□□□□ -1.32
PNKP-221ENST00000627317 CCDC179H3BU77 68 aa6.78□□□□□ -1.32
PNKP-221ENST00000627317 H0YAA0 97 aa6.77□□□□□ -1.33
PNKP-221ENST00000627317 SPTSSBQ8NFR3 76 aa6.77□□□□□ -1.33
PNKP-221ENST00000627317 ADM2Q7Z4H4 148 aa6.73□□□□□ -1.33
PNKP-221ENST00000627317 KRTAP19-6Q3LI70 58 aa6.71□□□□□ -1.34
PNKP-221ENST00000627317 COA5Q86WW8 74 aa6.7□□□□□ -1.34
PNKP-221ENST00000627317 KRTAP9-7A8MTY7 169 aa6.67□□□□□ -1.34
PNKP-221ENST00000627317 CRIPTQ9P021 101 aa6.66□□□□□ -1.34
PNKP-221ENST00000627317 ATP5EP56381 51 aaPredicted RBP6.63□□□□□ -1.35
PNKP-221ENST00000627317 SPRR2GQ9BYE4 73 aa6.61□□□□□ -1.35
PNKP-221ENST00000627317 P0C880 135 aa6.6□□□□□ -1.35
PNKP-221ENST00000627317 KRTAP3-2Q9BYR7 98 aa6.58□□□□□ -1.36
PNKP-221ENST00000627317 TMEM258P61165 79 aa6.57□□□□□ -1.36
PNKP-221ENST00000627317 MACF1Q9UPN3 7388 aaKnown RBP6.56□□□□□ -1.36
PNKP-221ENST00000627317 R4GN34 69 aa6.54□□□□□ -1.36
PNKP-221ENST00000627317 Q5VV11 94 aa6.53□□□□□ -1.36
PNKP-221ENST00000627317 MT1BP07438 61 aa6.51□□□□□ -1.37
PNKP-221ENST00000627317 KRTAP19-8Q3LI54 63 aa6.51□□□□□ -1.37
PNKP-221ENST00000627317 M0QZ58 72 aa6.5□□□□□ -1.37
PNKP-221ENST00000627317 SEC61GP60059 68 aa6.48□□□□□ -1.37
PNKP-221ENST00000627317 SYNE2Q8WXH0 6885 aaKnown RBP6.47□□□□□ -1.37
PNKP-221ENST00000627317 SERP1Q9Y6X1 66 aa6.44□□□□□ -1.38
PNKP-221ENST00000627317 PCP4P48539 62 aa6.4□□□□□ -1.38
PNKP-221ENST00000627317 LINC01554Q52M75 96 aa6.4□□□□□ -1.38
PNKP-221ENST00000627317 A0A1B0GU69 56 aa6.36□□□□□ -1.39
PNKP-221ENST00000627317 KRTAP10-5P60370 271 aa6.34□□□□□ -1.39
PNKP-221ENST00000627317 KRTAP6-3Q3LI67 103 aa6.34□□□□□ -1.39
PNKP-221ENST00000627317 PLAC4Q8WY50 150 aa6.34□□□□□ -1.39
PNKP-221ENST00000627317 A6NN06 94 aa6.33□□□□□ -1.4
PNKP-221ENST00000627317 A0A1B0GU33 70 aa6.3□□□□□ -1.4
PNKP-221ENST00000627317 KRTAP13-4Q3LI77 160 aa6.3□□□□□ -1.4
PNKP-221ENST00000627317 PRR15LQ9BU68 103 aa6.29□□□□□ -1.4
PNKP-221ENST00000627317 LINC01558Q9Y6Z2 57 aa6.26□□□□□ -1.41
PNKP-221ENST00000627317 SPATA8Q6RVD6 105 aa6.22□□□□□ -1.41
PNKP-221ENST00000627317 PRO2289Q9P1D8 64 aa6.2□□□□□ -1.42
PNKP-221ENST00000627317 A0A0D9SG42 100 aa6.19□□□□□ -1.42
PNKP-221ENST00000627317 MT1XP80297 61 aa6.15□□□□□ -1.42
PNKP-221ENST00000627317 V9GYY9 64 aa6.15□□□□□ -1.42
PNKP-221ENST00000627317 SMIM26A0A096LP01 95 aa6.14□□□□□ -1.43
PNKP-221ENST00000627317 NEBP20929 6669 aa6.12□□□□□ -1.43
PNKP-221ENST00000627317 KRTAP5-9P26371 169 aa6.11□□□□□ -1.43
PNKP-221ENST00000627317 MUC12Q9UKN1 5478 aa6.1□□□□□ -1.43
PNKP-221ENST00000627317 Q1T7F1 81 aa6.1□□□□□ -1.43
PNKP-221ENST00000627317 RPS28P62857 69 aaKnown RBP6.09□□□□□ -1.43
PNKP-221ENST00000627317 CAMK2N1Q7Z7J9 78 aa6.09□□□□□ -1.43
PNKP-221ENST00000627317 A8MU10 97 aa6.07□□□□□ -1.44
PNKP-221ENST00000627317 SPINT4Q6UDR6 99 aa6.07□□□□□ -1.44
PNKP-221ENST00000627317 KMT2DO14686 5537 aa6.07□□□□□ -1.44
PNKP-221ENST00000627317 UQCR11O14957 56 aa6.06□□□□□ -1.44
PNKP-221ENST00000627317 PSPHP1O15172 72 aa6.05□□□□□ -1.44
PNKP-221ENST00000627317 KRTAP12-1P59990 96 aa6.04□□□□□ -1.44
PNKP-221ENST00000627317 MDN1Q9NU22 5596 aa6.01□□□□□ -1.45
PNKP-221ENST00000627317 KRTAP12-2P59991 146 aa6□□□□□ -1.45
PNKP-221ENST00000627317 MIR22HGQ0VDD5 57 aa5.96□□□□□ -1.46
PNKP-221ENST00000627317 A6NED7 52 aa5.89□□□□□ -1.47
PNKP-221ENST00000627317 KRTAP10-7P60409 375 aaPredicted RBP5.88□□□□□ -1.47
PNKP-221ENST00000627317 SPRR2FQ96RM1 72 aa5.85□□□□□ -1.47
PNKP-221ENST00000627317 KRTAP10-12P60413 245 aa5.83□□□□□ -1.48
PNKP-221ENST00000627317 KRTAP20-1Q3LI63 56 aa5.83□□□□□ -1.48
PNKP-221ENST00000627317 KRTAP8-1Q8IUC2 63 aa5.83□□□□□ -1.48
PNKP-221ENST00000627317 K7ERS5 55 aa5.82□□□□□ -1.48
PNKP-221ENST00000627317 KRTAP4-8A0A0G2JLE6 195 aa5.81□□□□□ -1.48
PNKP-221ENST00000627317 KRTAP4-8Q9BYQ9 185 aa5.81□□□□□ -1.48
PNKP-221ENST00000627317 SPRR2EP22531 72 aa5.76□□□□□ -1.49
PNKP-221ENST00000627317 SPRR2BP35325 72 aa5.76□□□□□ -1.49
PNKP-221ENST00000627317 SPRR2AP35326 72 aa5.76□□□□□ -1.49
PNKP-221ENST00000627317 LCE1AQ5T7P2 110 aa5.75□□□□□ -1.49
PNKP-221ENST00000627317 C10orf95Q9H7T3 257 aa5.73□□□□□ -1.49
PNKP-221ENST00000627317 TNP1P09430 55 aa5.69□□□□□ -1.5
PNKP-221ENST00000627317 KRTAP2-3P0C7H8 128 aa5.68□□□□□ -1.5
PNKP-221ENST00000627317 KRTAP2-4Q9BYR9 128 aa5.68□□□□□ -1.5
PNKP-221ENST00000627317 CDC42SE1Q9NRR8 79 aa5.68□□□□□ -1.5
PNKP-221ENST00000627317 SPRR2DP22532 72 aa5.56□□□□□ -1.52
PNKP-221ENST00000627317 KRTAP25-1Q3LHN0 102 aa5.54□□□□□ -1.52
PNKP-221ENST00000627317 LCE3AQ5TA76 89 aa5.52□□□□□ -1.53
PNKP-221ENST00000627317 KRTAP2-2Q9BYT5 123 aa5.51□□□□□ -1.53
PNKP-221ENST00000627317 KRTAP2-1Q9BYU5 128 aa5.51□□□□□ -1.53
PNKP-221ENST00000627317 KRTAP19-7Q3SYF9 63 aa5.48□□□□□ -1.53
PNKP-221ENST00000627317 ROMO1P60602 79 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms