RNA–Protein interactions for RNA: ENST00000606752.1

USP6NL-204, Transcript of USP6 N-terminal like, humanhuman

TSL 1 (best)

Gene USP6NL, Length 1,823 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP6NL-204ENST00000606752 LINC01558Q9Y6Z2 57 aa10.77□□□□□ -0.68
USP6NL-204ENST00000606752 S4R3F8 94 aa10.75□□□□□ -0.69
USP6NL-204ENST00000606752 LCA10Q71F78 164 aa10.74□□□□□ -0.69
USP6NL-204ENST00000606752 KRTAP3-3Q9BYR6 98 aa10.7□□□□□ -0.7
USP6NL-204ENST00000606752 PSPHP1O15172 72 aa10.69□□□□□ -0.7
USP6NL-204ENST00000606752 PRR15LQ9BU68 103 aa10.67□□□□□ -0.7
USP6NL-204ENST00000606752 KRTAP19-2Q3LHN2 52 aa10.65□□□□□ -0.71
USP6NL-204ENST00000606752 MUC2Q02817 5179 aa10.63□□□□□ -0.71
USP6NL-204ENST00000606752 A0A1B0GU69 56 aa10.6□□□□□ -0.71
USP6NL-204ENST00000606752 Q5VV11 94 aa10.59□□□□□ -0.71
USP6NL-204ENST00000606752 SEC61GP60059 68 aa10.54□□□□□ -0.72
USP6NL-204ENST00000606752 UBR4Q5T4S7 5183 aa10.53□□□□□ -0.72
USP6NL-204ENST00000606752 CSAG1Q6PB30 78 aa10.53□□□□□ -0.72
USP6NL-204ENST00000606752 RNF213Q63HN8 5207 aa10.46□□□□□ -0.73
USP6NL-204ENST00000606752 LCE2CQ5TA81 110 aa10.39□□□□□ -0.75
USP6NL-204ENST00000606752 FLGP20930 4061 aaPredicted RBP10.37□□□□□ -0.75
USP6NL-204ENST00000606752 A6NED7 52 aa10.36□□□□□ -0.75
USP6NL-204ENST00000606752 KRTAP3-2Q9BYR7 98 aa10.33□□□□□ -0.76
USP6NL-204ENST00000606752 KRTAP10-6P60371 365 aaPredicted RBP10.32□□□□□ -0.76
USP6NL-204ENST00000606752 H0YAA0 97 aa10.3□□□□□ -0.76
USP6NL-204ENST00000606752 UQCR11O14957 56 aa10.29□□□□□ -0.76
USP6NL-204ENST00000606752 ADM2Q7Z4H4 148 aa10.28□□□□□ -0.76
USP6NL-204ENST00000606752 A0A1B0GU33 70 aa10.28□□□□□ -0.76
USP6NL-204ENST00000606752 BRK1Q8WUW1 75 aa10.27□□□□□ -0.77
USP6NL-204ENST00000606752 P0C880 135 aa10.23□□□□□ -0.77
USP6NL-204ENST00000606752 FAT4Q6V0I7 4981 aa10.2□□□□□ -0.78
USP6NL-204ENST00000606752 CDC42SE1Q9NRR8 79 aa10.18□□□□□ -0.78
USP6NL-204ENST00000606752 MT1HP80294 61 aa10.17□□□□□ -0.78
USP6NL-204ENST00000606752 MIR22HGQ0VDD5 57 aa10.17□□□□□ -0.78
USP6NL-204ENST00000606752 SPATA8Q6RVD6 105 aa10.17□□□□□ -0.78
USP6NL-204ENST00000606752 A8MU10 97 aa10.13□□□□□ -0.79
USP6NL-204ENST00000606752 M0R2T5 61 aa10.1□□□□□ -0.79
USP6NL-204ENST00000606752 PRO0628Q9UI54 55 aa10.07□□□□□ -0.8
USP6NL-204ENST00000606752 KRTAP13-4Q3LI77 160 aa10.03□□□□□ -0.8
USP6NL-204ENST00000606752 M0QZ58 72 aa9.99□□□□□ -0.81
USP6NL-204ENST00000606752 LORP23490 312 aaPredicted RBP9.93□□□□□ -0.82
USP6NL-204ENST00000606752 R4GN34 69 aa9.93□□□□□ -0.82
USP6NL-204ENST00000606752 A0A0D9SG42 100 aa9.85□□□□□ -0.83
USP6NL-204ENST00000606752 CRIPTQ9P021 101 aa9.84□□□□□ -0.83
USP6NL-204ENST00000606752 KRTAP9-8Q9BYQ0 159 aa9.82□□□□□ -0.84
USP6NL-204ENST00000606752 MT2AP02795 61 aa9.78□□□□□ -0.84
USP6NL-204ENST00000606752 LCE2AQ5TA79 106 aaPredicted RBP9.75□□□□□ -0.85
USP6NL-204ENST00000606752 LINC01554Q52M75 96 aa9.74□□□□□ -0.85
USP6NL-204ENST00000606752 MT1FP04733 61 aa9.72□□□□□ -0.85
USP6NL-204ENST00000606752 KRTAP10-10P60014 251 aa9.72□□□□□ -0.85
USP6NL-204ENST00000606752 PMAIP1Q13794 54 aa9.72□□□□□ -0.85
USP6NL-204ENST00000606752 K7ERS5 55 aa9.71□□□□□ -0.85
USP6NL-204ENST00000606752 KRTAP12-1P59990 96 aa9.66□□□□□ -0.86
USP6NL-204ENST00000606752 A6NN06 94 aa9.65□□□□□ -0.86
USP6NL-204ENST00000606752 KRTAP12-2P59991 146 aa9.63□□□□□ -0.87
USP6NL-204ENST00000606752 SPINT4Q6UDR6 99 aa9.63□□□□□ -0.87
USP6NL-204ENST00000606752 SPRR2GQ9BYE4 73 aa9.62□□□□□ -0.87
USP6NL-204ENST00000606752 KRTAP19-1Q8IUB9 90 aa9.58□□□□□ -0.88
USP6NL-204ENST00000606752 KRTAP9-3Q9BYQ3 159 aa9.46□□□□□ -0.9
USP6NL-204ENST00000606752 KRTAP19-8Q3LI54 63 aa9.35□□□□□ -0.91
USP6NL-204ENST00000606752 PLAC4Q8WY50 150 aa9.32□□□□□ -0.92
USP6NL-204ENST00000606752 ROMO1P60602 79 aa9.31□□□□□ -0.92
USP6NL-204ENST00000606752 KTN1-AS1Q86SY8 53 aa9.31□□□□□ -0.92
USP6NL-204ENST00000606752 CAMK2N1Q7Z7J9 78 aa9.31□□□□□ -0.92
USP6NL-204ENST00000606752 SVIPQ8NHG7 77 aa9.27□□□□□ -0.93
USP6NL-204ENST00000606752 MT1BP07438 61 aa9.22□□□□□ -0.93
USP6NL-204ENST00000606752 LCE2BO14633 110 aa9.18□□□□□ -0.94
USP6NL-204ENST00000606752 C10orf95Q9H7T3 257 aa9.15□□□□□ -0.95
USP6NL-204ENST00000606752 PRAC1Q96KF2 57 aa9.09□□□□□ -0.95
USP6NL-204ENST00000606752 MT1XP80297 61 aa8.93□□□□□ -0.98
USP6NL-204ENST00000606752 KRTAP10-5P60370 271 aa8.92□□□□□ -0.98
USP6NL-204ENST00000606752 KRTAP25-1Q3LHN0 102 aa8.91□□□□□ -0.98
USP6NL-204ENST00000606752 USH2AO75445 5202 aa8.89□□□□□ -0.99
USP6NL-204ENST00000606752 TNP1P09430 55 aa8.86□□□□□ -0.99
USP6NL-204ENST00000606752 PRO2289Q9P1D8 64 aa8.85□□□□□ -0.99
USP6NL-204ENST00000606752 LCE2DQ5TA82 110 aaPredicted RBP8.84□□□□□ -0.99
USP6NL-204ENST00000606752 PP632Q6XCG6 107 aa8.62□□□□□ -1.03
USP6NL-204ENST00000606752 KRTAP23-1A1A580 65 aa8.61□□□□□ -1.03
USP6NL-204ENST00000606752 KRTAP19-6Q3LI70 58 aa8.61□□□□□ -1.03
USP6NL-204ENST00000606752 SSPOA2VEC9 5147 aa8.59□□□□□ -1.03
USP6NL-204ENST00000606752 KRTAP10-7P60409 375 aaPredicted RBP8.58□□□□□ -1.04
USP6NL-204ENST00000606752 FSIP2Q5CZC0 6907 aa8.55□□□□□ -1.04
USP6NL-204ENST00000606752 KRTAP10-12P60413 245 aa8.49□□□□□ -1.05
USP6NL-204ENST00000606752 LCE3AQ5TA76 89 aa8.47□□□□□ -1.05
USP6NL-204ENST00000606752 KRTAP9-2Q9BYQ4 174 aa8.46□□□□□ -1.06
USP6NL-204ENST00000606752 KRTAP8-1Q8IUC2 63 aa8.31□□□□□ -1.08
USP6NL-204ENST00000606752 FCGBPQ9Y6R7 5405 aaPredicted RBP8.25□□□□□ -1.09
USP6NL-204ENST00000606752 KRTAP4-8A0A0G2JLE6 195 aa8.24□□□□□ -1.09
USP6NL-204ENST00000606752 KRTAP4-8Q9BYQ9 185 aa8.24□□□□□ -1.09
USP6NL-204ENST00000606752 CRCT1Q9UGL9 99 aa8.18□□□□□ -1.1
USP6NL-204ENST00000606752 KMT2DO14686 5537 aa8.17□□□□□ -1.1
USP6NL-204ENST00000606752 KRTAP12-3P60328 96 aa8.14□□□□□ -1.11
USP6NL-204ENST00000606752 KRTAP19-5Q3LI72 72 aa8.08□□□□□ -1.12
USP6NL-204ENST00000606752 KRTAP15-1Q3LI76 137 aa7.99□□□□□ -1.13
USP6NL-204ENST00000606752 KRTAP19-7Q3SYF9 63 aa7.96□□□□□ -1.13
USP6NL-204ENST00000606752 MACF1Q9UPN3 7388 aaKnown RBP7.82□□□□□ -1.16
USP6NL-204ENST00000606752 MT1EP04732 61 aa7.82□□□□□ -1.16
USP6NL-204ENST00000606752 KRTAP9-6A0A140TA67 174 aa7.8□□□□□ -1.16
USP6NL-204ENST00000606752 MT1LQ93083 61 aa7.68□□□□□ -1.18
USP6NL-204ENST00000606752 SPRR2FQ96RM1 72 aa7.65□□□□□ -1.18
USP6NL-204ENST00000606752 SPRR5A0A1B0GTR4 108 aa7.64□□□□□ -1.19
USP6NL-204ENST00000606752 KRTAP19-4Q3LI73 84 aa7.64□□□□□ -1.19
USP6NL-204ENST00000606752 LCE3CQ5T5A8 94 aa7.61□□□□□ -1.19
USP6NL-204ENST00000606752 SYNE2Q8WXH0 6885 aaKnown RBP7.6□□□□□ -1.19
USP6NL-204ENST00000606752 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms