RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 C4orf26Q17RF5 130 aa4.55□□□□□ -1.68
TRIM28-214ENST00000600840 FLGP20930 4061 aaPredicted RBP4.53□□□□□ -1.68
TRIM28-214ENST00000600840 ATP11AUNQ6ZP68 121 aa4.53□□□□□ -1.68
TRIM28-214ENST00000600840 Q5W150 140 aa4.51□□□□□ -1.69
TRIM28-214ENST00000600840 PRO0628Q9UI54 55 aa4.51□□□□□ -1.69
TRIM28-214ENST00000600840 SSPOA2VEC9 5147 aa4.49□□□□□ -1.69
TRIM28-214ENST00000600840 COA5Q86WW8 74 aa4.49□□□□□ -1.69
TRIM28-214ENST00000600840 MPLKIPQ8TAP9 179 aa4.49□□□□□ -1.69
TRIM28-214ENST00000600840 COX6B2Q6YFQ2 88 aa4.48□□□□□ -1.69
TRIM28-214ENST00000600840 FCGBPQ9Y6R7 5405 aaPredicted RBP4.48□□□□□ -1.69
TRIM28-214ENST00000600840 USH2AO75445 5202 aa4.48□□□□□ -1.69
TRIM28-214ENST00000600840 ACYP2P14621 99 aa4.47□□□□□ -1.69
TRIM28-214ENST00000600840 IGKV2-30P06310 120 aa4.46□□□□□ -1.7
TRIM28-214ENST00000600840 KRTAP19-1Q8IUB9 90 aa4.46□□□□□ -1.7
TRIM28-214ENST00000600840 HRES1P13985 223 aa4.44□□□□□ -1.7
TRIM28-214ENST00000600840 SPINK7P58062 85 aa4.44□□□□□ -1.7
TRIM28-214ENST00000600840 DMAC1Q96GE9 116 aa4.44□□□□□ -1.7
TRIM28-214ENST00000600840 BRK1Q8WUW1 75 aa4.42□□□□□ -1.7
TRIM28-214ENST00000600840 LINC01558Q9Y6Z2 57 aa4.42□□□□□ -1.7
TRIM28-214ENST00000600840 A8MUN3 132 aa4.4□□□□□ -1.71
TRIM28-214ENST00000600840 C7orf65Q6ZTY9 151 aa4.4□□□□□ -1.71
TRIM28-214ENST00000600840 KRTAP9-8Q9BYQ0 159 aa4.4□□□□□ -1.71
TRIM28-214ENST00000600840 SYNE2Q8WXH0 6885 aaKnown RBP4.39□□□□□ -1.71
TRIM28-214ENST00000600840 CHKB-CPT1BH3BT56 60 aa4.39□□□□□ -1.71
TRIM28-214ENST00000600840 PSPHP1O15172 72 aa4.38□□□□□ -1.71
TRIM28-214ENST00000600840 PRR15LQ9BU68 103 aa4.38□□□□□ -1.71
TRIM28-214ENST00000600840 MACF1Q9UPN3 7388 aaKnown RBP4.37□□□□□ -1.71
TRIM28-214ENST00000600840 LCE2BO14633 110 aa4.37□□□□□ -1.71
TRIM28-214ENST00000600840 Q5VV11 94 aa4.37□□□□□ -1.71
TRIM28-214ENST00000600840 IGKV2D-30A0A075B6S6 120 aa4.35□□□□□ -1.71
TRIM28-214ENST00000600840 SPTSSBQ8NFR3 76 aa4.35□□□□□ -1.71
TRIM28-214ENST00000600840 KRTAP3-1Q9BYR8 98 aa4.33□□□□□ -1.72
TRIM28-214ENST00000600840 A6NED7 52 aa4.32□□□□□ -1.72
TRIM28-214ENST00000600840 MT2AP02795 61 aa4.32□□□□□ -1.72
TRIM28-214ENST00000600840 CDC42SE1Q9NRR8 79 aa4.31□□□□□ -1.72
TRIM28-214ENST00000600840 MT1FP04733 61 aa4.3□□□□□ -1.72
TRIM28-214ENST00000600840 KRTAP6-3Q3LI67 103 aa4.3□□□□□ -1.72
TRIM28-214ENST00000600840 RBM12B-AS1Q9P1G2 102 aa4.29□□□□□ -1.72
TRIM28-214ENST00000600840 A0A1B0GU69 56 aa4.28□□□□□ -1.72
TRIM28-214ENST00000600840 KRTAP9-3Q9BYQ3 159 aa4.27□□□□□ -1.73
TRIM28-214ENST00000600840 SEC61GP60059 68 aa4.25□□□□□ -1.73
TRIM28-214ENST00000600840 KRTAP19-6Q3LI70 58 aa4.24□□□□□ -1.73
TRIM28-214ENST00000600840 H1FX-AS1Q4G0G2 97 aa4.24□□□□□ -1.73
TRIM28-214ENST00000600840 KRTAP10-10P60014 251 aa4.23□□□□□ -1.73
TRIM28-214ENST00000600840 UQCR11O14957 56 aa4.22□□□□□ -1.73
TRIM28-214ENST00000600840 PMAIP1Q13794 54 aa4.2□□□□□ -1.74
TRIM28-214ENST00000600840 KRTAP20-1Q3LI63 56 aa4.2□□□□□ -1.74
TRIM28-214ENST00000600840 LCA10Q71F78 164 aa4.2□□□□□ -1.74
TRIM28-214ENST00000600840 SPATA8Q6RVD6 105 aa4.18□□□□□ -1.74
TRIM28-214ENST00000600840 KRTAP3-3Q9BYR6 98 aa4.18□□□□□ -1.74
TRIM28-214ENST00000600840 NEBP20929 6669 aa4.17□□□□□ -1.74
TRIM28-214ENST00000600840 MIR22HGQ0VDD5 57 aa4.15□□□□□ -1.75
TRIM28-214ENST00000600840 KTN1-AS1Q86SY8 53 aa4.14□□□□□ -1.75
TRIM28-214ENST00000600840 A6NN06 94 aa4.13□□□□□ -1.75
TRIM28-214ENST00000600840 S4R3F8 94 aa4.11□□□□□ -1.75
TRIM28-214ENST00000600840 A8MU10 97 aa4.08□□□□□ -1.76
TRIM28-214ENST00000600840 A0A1B0GU33 70 aa4.06□□□□□ -1.76
TRIM28-214ENST00000600840 CSAG1Q6PB30 78 aa4.06□□□□□ -1.76
TRIM28-214ENST00000600840 MUC12Q9UKN1 5478 aa4.05□□□□□ -1.76
TRIM28-214ENST00000600840 K7ERS5 55 aa4.03□□□□□ -1.76
TRIM28-214ENST00000600840 H0YAA0 97 aa4.01□□□□□ -1.77
TRIM28-214ENST00000600840 KRTAP3-2Q9BYR7 98 aa3.97□□□□□ -1.77
TRIM28-214ENST00000600840 KRTAP2-3P0C7H8 128 aa3.95□□□□□ -1.78
TRIM28-214ENST00000600840 KRTAP2-4Q9BYR9 128 aa3.95□□□□□ -1.78
TRIM28-214ENST00000600840 MT1BP07438 61 aa3.93□□□□□ -1.78
TRIM28-214ENST00000600840 KRTAP5-9P26371 169 aa3.93□□□□□ -1.78
TRIM28-214ENST00000600840 ADM2Q7Z4H4 148 aa3.92□□□□□ -1.78
TRIM28-214ENST00000600840 SPRR2GQ9BYE4 73 aa3.92□□□□□ -1.78
TRIM28-214ENST00000600840 P0C880 135 aa3.91□□□□□ -1.78
TRIM28-214ENST00000600840 M0QZ58 72 aa3.89□□□□□ -1.79
TRIM28-214ENST00000600840 KMT2DO14686 5537 aa3.88□□□□□ -1.79
TRIM28-214ENST00000600840 CRIPTQ9P021 101 aa3.88□□□□□ -1.79
TRIM28-214ENST00000600840 KRTAP19-8Q3LI54 63 aa3.87□□□□□ -1.79
TRIM28-214ENST00000600840 MDN1Q9NU22 5596 aa3.85□□□□□ -1.79
TRIM28-214ENST00000600840 KRTAP10-5P60370 271 aa3.82□□□□□ -1.8
TRIM28-214ENST00000600840 ROMO1P60602 79 aa3.82□□□□□ -1.8
TRIM28-214ENST00000600840 LINC01554Q52M75 96 aa3.8□□□□□ -1.8
TRIM28-214ENST00000600840 PRAC1Q96KF2 57 aa3.8□□□□□ -1.8
TRIM28-214ENST00000600840 KRTAP2-2Q9BYT5 123 aa3.8□□□□□ -1.8
TRIM28-214ENST00000600840 KRTAP2-1Q9BYU5 128 aa3.8□□□□□ -1.8
TRIM28-214ENST00000600840 SPRR2EP22531 72 aa3.79□□□□□ -1.8
TRIM28-214ENST00000600840 SPRR2BP35325 72 aa3.79□□□□□ -1.8
TRIM28-214ENST00000600840 SPRR2AP35326 72 aa3.79□□□□□ -1.8
TRIM28-214ENST00000600840 KRTAP25-1Q3LHN0 102 aa3.78□□□□□ -1.8
TRIM28-214ENST00000600840 KRTAP13-4Q3LI77 160 aa3.78□□□□□ -1.8
TRIM28-214ENST00000600840 R4GN34 69 aa3.76□□□□□ -1.81
TRIM28-214ENST00000600840 A0A0D9SG42 100 aa3.75□□□□□ -1.81
TRIM28-214ENST00000600840 SPRR2FQ96RM1 72 aa3.74□□□□□ -1.81
TRIM28-214ENST00000600840 KRTAP12-1P59990 96 aa3.71□□□□□ -1.82
TRIM28-214ENST00000600840 SPINT4Q6UDR6 99 aa3.69□□□□□ -1.82
TRIM28-214ENST00000600840 KRTAP12-2P59991 146 aa3.68□□□□□ -1.82
TRIM28-214ENST00000600840 LCE1AQ5T7P2 110 aa3.68□□□□□ -1.82
TRIM28-214ENST00000600840 SPRR2DP22532 72 aa3.66□□□□□ -1.82
TRIM28-214ENST00000600840 MT1XP80297 61 aa3.65□□□□□ -1.83
TRIM28-214ENST00000600840 GPR98Q8WXG9 6306 aa3.64□□□□□ -1.83
TRIM28-214ENST00000600840 PLAC4Q8WY50 150 aa3.63□□□□□ -1.83
TRIM28-214ENST00000600840 LCE3BQ5TA77 95 aa3.6□□□□□ -1.83
TRIM28-214ENST00000600840 KRTAP8-1Q8IUC2 63 aa3.57□□□□□ -1.84
TRIM28-214ENST00000600840 KRTAP4-8A0A0G2JLE6 195 aa3.56□□□□□ -1.84
TRIM28-214ENST00000600840 KRTAP4-8Q9BYQ9 185 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms