RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 MPLKIPQ8TAP9 179 aa6.36□□□□□ -1.39
UPF1-208ENST00000600012 KRTAP9-8Q9BYQ0 159 aa6.35□□□□□ -1.39
UPF1-208ENST00000600012 SPANXA2-OT1Q8N9U9 137 aa6.34□□□□□ -1.39
UPF1-208ENST00000600012 FAM236DA0A1B0GTK5 79 aa6.32□□□□□ -1.4
UPF1-208ENST00000600012 FAM236CP0DP71 79 aa6.32□□□□□ -1.4
UPF1-208ENST00000600012 TMEM258P61165 79 aa6.32□□□□□ -1.4
UPF1-208ENST00000600012 KRTAP3-1Q9BYR8 98 aa6.32□□□□□ -1.4
UPF1-208ENST00000600012 RBM12B-AS1Q9P1G2 102 aa6.32□□□□□ -1.4
UPF1-208ENST00000600012 DMAC1Q96GE9 116 aa6.3□□□□□ -1.4
UPF1-208ENST00000600012 SSPOA2VEC9 5147 aa6.28□□□□□ -1.4
UPF1-208ENST00000600012 USH2AO75445 5202 aa6.27□□□□□ -1.41
UPF1-208ENST00000600012 ATP5EP56381 51 aaPredicted RBP6.26□□□□□ -1.41
UPF1-208ENST00000600012 A8MUN3 132 aa6.25□□□□□ -1.41
UPF1-208ENST00000600012 MT2AP02795 61 aa6.24□□□□□ -1.41
UPF1-208ENST00000600012 ACYP2P14621 99 aa6.22□□□□□ -1.41
UPF1-208ENST00000600012 H1FX-AS1Q4G0G2 97 aa6.22□□□□□ -1.41
UPF1-208ENST00000600012 MT1FP04733 61 aa6.19□□□□□ -1.42
UPF1-208ENST00000600012 FCGBPQ9Y6R7 5405 aaPredicted RBP6.18□□□□□ -1.42
UPF1-208ENST00000600012 LCE2BO14633 110 aa6.18□□□□□ -1.42
UPF1-208ENST00000600012 COA5Q86WW8 74 aa6.18□□□□□ -1.42
UPF1-208ENST00000600012 KRTAP19-1Q8IUB9 90 aa6.18□□□□□ -1.42
UPF1-208ENST00000600012 S4R3F8 94 aa6.17□□□□□ -1.42
UPF1-208ENST00000600012 KRTAP10-10P60014 251 aa6.16□□□□□ -1.42
UPF1-208ENST00000600012 KRTAP9-3Q9BYQ3 159 aa6.16□□□□□ -1.42
UPF1-208ENST00000600012 CHKB-CPT1BH3BT56 60 aa6.15□□□□□ -1.42
UPF1-208ENST00000600012 LCA10Q71F78 164 aa6.14□□□□□ -1.43
UPF1-208ENST00000600012 SERP1Q9Y6X1 66 aa6.13□□□□□ -1.43
UPF1-208ENST00000600012 KRTAP3-3Q9BYR6 98 aa6.1□□□□□ -1.43
UPF1-208ENST00000600012 MACF1Q9UPN3 7388 aaKnown RBP6.04□□□□□ -1.44
UPF1-208ENST00000600012 KRTAP19-6Q3LI70 58 aa6.03□□□□□ -1.44
UPF1-208ENST00000600012 SPTSSBQ8NFR3 76 aa6.02□□□□□ -1.45
UPF1-208ENST00000600012 CSAG1Q6PB30 78 aa6.01□□□□□ -1.45
UPF1-208ENST00000600012 RPS28P62857 69 aaKnown RBP6□□□□□ -1.45
UPF1-208ENST00000600012 SYNE2Q8WXH0 6885 aaKnown RBP5.99□□□□□ -1.45
UPF1-208ENST00000600012 SMIM26A0A096LP01 95 aa5.93□□□□□ -1.46
UPF1-208ENST00000600012 KRTAP6-3Q3LI67 103 aa5.88□□□□□ -1.47
UPF1-208ENST00000600012 ADM2Q7Z4H4 148 aa5.88□□□□□ -1.47
UPF1-208ENST00000600012 LINC01558Q9Y6Z2 57 aa5.88□□□□□ -1.47
UPF1-208ENST00000600012 H0YAA0 97 aa5.85□□□□□ -1.47
UPF1-208ENST00000600012 KRTAP3-2Q9BYR7 98 aa5.85□□□□□ -1.47
UPF1-208ENST00000600012 A0A1B0GU69 56 aa5.84□□□□□ -1.47
UPF1-208ENST00000600012 Q1T7F1 81 aa5.84□□□□□ -1.47
UPF1-208ENST00000600012 P0C880 135 aa5.83□□□□□ -1.48
UPF1-208ENST00000600012 SEC61GP60059 68 aa5.83□□□□□ -1.48
UPF1-208ENST00000600012 PRR15LQ9BU68 103 aa5.83□□□□□ -1.48
UPF1-208ENST00000600012 V9GYY9 64 aa5.83□□□□□ -1.48
UPF1-208ENST00000600012 PSPHP1O15172 72 aa5.79□□□□□ -1.48
UPF1-208ENST00000600012 Q5VV11 94 aa5.73□□□□□ -1.49
UPF1-208ENST00000600012 A0A1B0GU33 70 aa5.71□□□□□ -1.5
UPF1-208ENST00000600012 KRTAP13-4Q3LI77 160 aa5.67□□□□□ -1.5
UPF1-208ENST00000600012 NEBP20929 6669 aa5.67□□□□□ -1.5
UPF1-208ENST00000600012 A6NN06 94 aa5.66□□□□□ -1.5
UPF1-208ENST00000600012 M0QZ58 72 aa5.66□□□□□ -1.5
UPF1-208ENST00000600012 R4GN34 69 aa5.66□□□□□ -1.5
UPF1-208ENST00000600012 SPATA8Q6RVD6 105 aa5.65□□□□□ -1.5
UPF1-208ENST00000600012 CRIPTQ9P021 101 aa5.65□□□□□ -1.5
UPF1-208ENST00000600012 UQCR11O14957 56 aa5.62□□□□□ -1.51
UPF1-208ENST00000600012 MT1BP07438 61 aa5.62□□□□□ -1.51
UPF1-208ENST00000600012 A6NED7 52 aa5.61□□□□□ -1.51
UPF1-208ENST00000600012 SPRR2GQ9BYE4 73 aa5.59□□□□□ -1.51
UPF1-208ENST00000600012 KRTAP19-8Q3LI54 63 aa5.58□□□□□ -1.52
UPF1-208ENST00000600012 LINC01554Q52M75 96 aa5.58□□□□□ -1.52
UPF1-208ENST00000600012 MUC12Q9UKN1 5478 aa5.58□□□□□ -1.52
UPF1-208ENST00000600012 A0A0D9SG42 100 aa5.56□□□□□ -1.52
UPF1-208ENST00000600012 A8MU10 97 aa5.56□□□□□ -1.52
UPF1-208ENST00000600012 MIR22HGQ0VDD5 57 aa5.56□□□□□ -1.52
UPF1-208ENST00000600012 KRTAP20-1Q3LI63 56 aa5.56□□□□□ -1.52
UPF1-208ENST00000600012 KRTAP10-5P60370 271 aa5.55□□□□□ -1.52
UPF1-208ENST00000600012 KRTAP5-9P26371 169 aa5.52□□□□□ -1.53
UPF1-208ENST00000600012 CDC42SE1Q9NRR8 79 aa5.47□□□□□ -1.53
UPF1-208ENST00000600012 PRO0628Q9UI54 55 aa5.45□□□□□ -1.54
UPF1-208ENST00000600012 BRK1Q8WUW1 75 aa5.44□□□□□ -1.54
UPF1-208ENST00000600012 KRTAP12-1P59990 96 aa5.43□□□□□ -1.54
UPF1-208ENST00000600012 KMT2DO14686 5537 aa5.42□□□□□ -1.54
UPF1-208ENST00000600012 SPINT4Q6UDR6 99 aa5.42□□□□□ -1.54
UPF1-208ENST00000600012 KRTAP12-2P59991 146 aa5.41□□□□□ -1.54
UPF1-208ENST00000600012 MDN1Q9NU22 5596 aa5.38□□□□□ -1.55
UPF1-208ENST00000600012 PLAC4Q8WY50 150 aa5.37□□□□□ -1.55
UPF1-208ENST00000600012 KRTAP2-3P0C7H8 128 aa5.35□□□□□ -1.55
UPF1-208ENST00000600012 KRTAP2-4Q9BYR9 128 aa5.35□□□□□ -1.55
UPF1-208ENST00000600012 K7ERS5 55 aa5.31□□□□□ -1.56
UPF1-208ENST00000600012 CAMK2N1Q7Z7J9 78 aa5.29□□□□□ -1.56
UPF1-208ENST00000600012 SPRR2FQ96RM1 72 aa5.29□□□□□ -1.56
UPF1-208ENST00000600012 SPRR2EP22531 72 aa5.27□□□□□ -1.57
UPF1-208ENST00000600012 SPRR2BP35325 72 aa5.27□□□□□ -1.57
UPF1-208ENST00000600012 SPRR2AP35326 72 aa5.27□□□□□ -1.57
UPF1-208ENST00000600012 PRO2289Q9P1D8 64 aa5.26□□□□□ -1.57
UPF1-208ENST00000600012 MT1XP80297 61 aa5.22□□□□□ -1.57
UPF1-208ENST00000600012 KRTAP8-1Q8IUC2 63 aa5.2□□□□□ -1.58
UPF1-208ENST00000600012 LCE1AQ5T7P2 110 aa5.17□□□□□ -1.58
UPF1-208ENST00000600012 KRTAP2-2Q9BYT5 123 aa5.17□□□□□ -1.58
UPF1-208ENST00000600012 KRTAP2-1Q9BYU5 128 aa5.17□□□□□ -1.58
UPF1-208ENST00000600012 C10orf95Q9H7T3 257 aa5.15□□□□□ -1.59
UPF1-208ENST00000600012 PMAIP1Q13794 54 aa5.11□□□□□ -1.59
UPF1-208ENST00000600012 SPRR2DP22532 72 aa5.1□□□□□ -1.59
UPF1-208ENST00000600012 ROMO1P60602 79 aa5.09□□□□□ -1.59
UPF1-208ENST00000600012 KRTAP4-8A0A0G2JLE6 195 aa5.05□□□□□ -1.6
UPF1-208ENST00000600012 KRTAP4-8Q9BYQ9 185 aa5.05□□□□□ -1.6
UPF1-208ENST00000600012 KRTAP10-7P60409 375 aaPredicted RBP5.02□□□□□ -1.61
UPF1-208ENST00000600012 TNP1P09430 55 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms