RNA–Protein interactions for RNA: ENST00000587339.2

TRIM47-204, Transcript of tripartite motif containing 47, humanhuman

TSL 1 (best)

Gene TRIM47, Length 1,907 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47-204ENST00000587339 SEC61GP60059 68 aa10.12□□□□□ -0.79
TRIM47-204ENST00000587339 HMCN2Q8NDA2 5059 aa10.08□□□□□ -0.8
TRIM47-204ENST00000587339 RBM12B-AS1Q9P1G2 102 aa10.05□□□□□ -0.8
TRIM47-204ENST00000587339 PRR15LQ9BU68 103 aa10.04□□□□□ -0.8
TRIM47-204ENST00000587339 LINC01558Q9Y6Z2 57 aa10.01□□□□□ -0.81
TRIM47-204ENST00000587339 SPTSSBQ8NFR3 76 aa10.01□□□□□ -0.81
TRIM47-204ENST00000587339 KRTAP4-1Q9BYQ7 146 aa10□□□□□ -0.81
TRIM47-204ENST00000587339 A8MU10 97 aa9.97□□□□□ -0.81
TRIM47-204ENST00000587339 H1FX-AS1Q4G0G2 97 aa9.97□□□□□ -0.81
TRIM47-204ENST00000587339 MUC17Q685J3 4493 aa9.94□□□□□ -0.82
TRIM47-204ENST00000587339 LCA10Q71F78 164 aa9.92□□□□□ -0.82
TRIM47-204ENST00000587339 S4R3F8 94 aa9.92□□□□□ -0.82
TRIM47-204ENST00000587339 A6NED7 52 aa9.91□□□□□ -0.82
TRIM47-204ENST00000587339 KTN1-AS1Q86SY8 53 aa9.88□□□□□ -0.83
TRIM47-204ENST00000587339 CDC42SE1Q9NRR8 79 aa9.88□□□□□ -0.83
TRIM47-204ENST00000587339 A0A1B0GU69 56 aa9.88□□□□□ -0.83
TRIM47-204ENST00000587339 KRTAP3-3Q9BYR6 98 aa9.87□□□□□ -0.83
TRIM47-204ENST00000587339 MUC2Q02817 5179 aa9.83□□□□□ -0.84
TRIM47-204ENST00000587339 A6NN06 94 aa9.81□□□□□ -0.84
TRIM47-204ENST00000587339 KRTAP19-2Q3LHN2 52 aa9.74□□□□□ -0.85
TRIM47-204ENST00000587339 CSAG1Q6PB30 78 aa9.7□□□□□ -0.86
TRIM47-204ENST00000587339 UBR4Q5T4S7 5183 aa9.68□□□□□ -0.86
TRIM47-204ENST00000587339 UQCR11O14957 56 aa9.58□□□□□ -0.88
TRIM47-204ENST00000587339 RNF213Q63HN8 5207 aa9.54□□□□□ -0.88
TRIM47-204ENST00000587339 A0A1B0GU33 70 aa9.53□□□□□ -0.88
TRIM47-204ENST00000587339 KRTAP10-6P60371 365 aaPredicted RBP9.53□□□□□ -0.88
TRIM47-204ENST00000587339 KRTAP3-2Q9BYR7 98 aa9.53□□□□□ -0.88
TRIM47-204ENST00000587339 ADM2Q7Z4H4 148 aa9.5□□□□□ -0.89
TRIM47-204ENST00000587339 LCE2CQ5TA81 110 aa9.48□□□□□ -0.89
TRIM47-204ENST00000587339 MIR22HGQ0VDD5 57 aa9.48□□□□□ -0.89
TRIM47-204ENST00000587339 H0YAA0 97 aa9.47□□□□□ -0.89
TRIM47-204ENST00000587339 P0C880 135 aa9.46□□□□□ -0.9
TRIM47-204ENST00000587339 SPATA8Q6RVD6 105 aa9.44□□□□□ -0.9
TRIM47-204ENST00000587339 FLGP20930 4061 aaPredicted RBP9.43□□□□□ -0.9
TRIM47-204ENST00000587339 FAT4Q6V0I7 4981 aa9.4□□□□□ -0.9
TRIM47-204ENST00000587339 MT1HP80294 61 aa9.3□□□□□ -0.92
TRIM47-204ENST00000587339 KRTAP13-4Q3LI77 160 aa9.29□□□□□ -0.92
TRIM47-204ENST00000587339 PRAC1Q96KF2 57 aa9.29□□□□□ -0.92
TRIM47-204ENST00000587339 M0R2T5 61 aa9.27□□□□□ -0.93
TRIM47-204ENST00000587339 M0QZ58 72 aa9.22□□□□□ -0.93
TRIM47-204ENST00000587339 R4GN34 69 aa9.18□□□□□ -0.94
TRIM47-204ENST00000587339 LINC01554Q52M75 96 aa9.17□□□□□ -0.94
TRIM47-204ENST00000587339 A0A0D9SG42 100 aa9.16□□□□□ -0.94
TRIM47-204ENST00000587339 LORP23490 312 aaPredicted RBP9.16□□□□□ -0.94
TRIM47-204ENST00000587339 K7ERS5 55 aa9.04□□□□□ -0.96
TRIM47-204ENST00000587339 CRIPTQ9P021 101 aa9.03□□□□□ -0.96
TRIM47-204ENST00000587339 KRTAP9-8Q9BYQ0 159 aa8.97□□□□□ -0.97
TRIM47-204ENST00000587339 MT2AP02795 61 aa8.95□□□□□ -0.98
TRIM47-204ENST00000587339 KRTAP12-1P59990 96 aa8.94□□□□□ -0.98
TRIM47-204ENST00000587339 KRTAP12-2P59991 146 aa8.94□□□□□ -0.98
TRIM47-204ENST00000587339 SPINT4Q6UDR6 99 aa8.94□□□□□ -0.98
TRIM47-204ENST00000587339 KRTAP10-10P60014 251 aa8.91□□□□□ -0.98
TRIM47-204ENST00000587339 MT1FP04733 61 aa8.9□□□□□ -0.98
TRIM47-204ENST00000587339 LCE2AQ5TA79 106 aaPredicted RBP8.86□□□□□ -0.99
TRIM47-204ENST00000587339 SPRR2GQ9BYE4 73 aa8.82□□□□□ -1
TRIM47-204ENST00000587339 KRTAP25-1Q3LHN0 102 aa8.8□□□□□ -1
TRIM47-204ENST00000587339 KRTAP19-1Q8IUB9 90 aa8.79□□□□□ -1
TRIM47-204ENST00000587339 ROMO1P60602 79 aa8.67□□□□□ -1.02
TRIM47-204ENST00000587339 H3BS24 57 aa8.66□□□□□ -1.02
TRIM47-204ENST00000587339 KRTAP9-3Q9BYQ3 159 aa8.63□□□□□ -1.03
TRIM47-204ENST00000587339 CAMK2N1Q7Z7J9 78 aa8.62□□□□□ -1.03
TRIM47-204ENST00000587339 PLAC4Q8WY50 150 aa8.58□□□□□ -1.04
TRIM47-204ENST00000587339 KRTAP19-8Q3LI54 63 aa8.55□□□□□ -1.04
TRIM47-204ENST00000587339 C10orf95Q9H7T3 257 aa8.45□□□□□ -1.06
TRIM47-204ENST00000587339 MT1BP07438 61 aa8.44□□□□□ -1.06
TRIM47-204ENST00000587339 LCE2BO14633 110 aa8.38□□□□□ -1.07
TRIM47-204ENST00000587339 TNP1P09430 55 aa8.19□□□□□ -1.1
TRIM47-204ENST00000587339 KRTAP10-5P60370 271 aa8.19□□□□□ -1.1
TRIM47-204ENST00000587339 MT1XP80297 61 aa8.19□□□□□ -1.1
TRIM47-204ENST00000587339 USH2AO75445 5202 aa8.16□□□□□ -1.1
TRIM47-204ENST00000587339 PRO2289Q9P1D8 64 aa8.13□□□□□ -1.11
TRIM47-204ENST00000587339 KRTAP15-1Q3LI76 137 aa8.09□□□□□ -1.11
TRIM47-204ENST00000587339 PP632Q6XCG6 107 aa7.99□□□□□ -1.13
TRIM47-204ENST00000587339 LCE2DQ5TA82 110 aaPredicted RBP7.98□□□□□ -1.13
TRIM47-204ENST00000587339 KRTAP23-1A1A580 65 aa7.93□□□□□ -1.14
TRIM47-204ENST00000587339 NDUFAF8A1L188 74 aa7.92□□□□□ -1.14
TRIM47-204ENST00000587339 FSIP2Q5CZC0 6907 aa7.91□□□□□ -1.14
TRIM47-204ENST00000587339 KRTAP10-7P60409 375 aaPredicted RBP7.89□□□□□ -1.15
TRIM47-204ENST00000587339 SSPOA2VEC9 5147 aa7.85□□□□□ -1.15
TRIM47-204ENST00000587339 KRTAP19-6Q3LI70 58 aa7.84□□□□□ -1.16
TRIM47-204ENST00000587339 KRTAP10-12P60413 245 aa7.83□□□□□ -1.16
TRIM47-204ENST00000587339 LCE3AQ5TA76 89 aa7.82□□□□□ -1.16
TRIM47-204ENST00000587339 KRTAP8-1Q8IUC2 63 aa7.65□□□□□ -1.18
TRIM47-204ENST00000587339 KRTAP9-2Q9BYQ4 174 aa7.65□□□□□ -1.18
TRIM47-204ENST00000587339 KRTAP4-8A0A0G2JLE6 195 aa7.57□□□□□ -1.2
TRIM47-204ENST00000587339 KRTAP4-8Q9BYQ9 185 aa7.57□□□□□ -1.2
TRIM47-204ENST00000587339 KMT2DO14686 5537 aa7.56□□□□□ -1.2
TRIM47-204ENST00000587339 A0A0A0MQY5 61 aa7.56□□□□□ -1.2
TRIM47-204ENST00000587339 KRTAP12-3P60328 96 aa7.51□□□□□ -1.21
TRIM47-204ENST00000587339 FCGBPQ9Y6R7 5405 aaPredicted RBP7.51□□□□□ -1.21
TRIM47-204ENST00000587339 KRTAP19-5Q3LI72 72 aa7.43□□□□□ -1.22
TRIM47-204ENST00000587339 CRCT1Q9UGL9 99 aa7.39□□□□□ -1.23
TRIM47-204ENST00000587339 LUZP6Q538Z0 58 aa7.32□□□□□ -1.24
TRIM47-204ENST00000587339 KRTAP19-7Q3SYF9 63 aa7.31□□□□□ -1.24
TRIM47-204ENST00000587339 MACF1Q9UPN3 7388 aaKnown RBP7.21□□□□□ -1.26
TRIM47-204ENST00000587339 MT1EP04732 61 aa7.17□□□□□ -1.26
TRIM47-204ENST00000587339 SPRR5A0A1B0GTR4 108 aa7.1□□□□□ -1.27
TRIM47-204ENST00000587339 MT1LQ93083 61 aa7.04□□□□□ -1.28
TRIM47-204ENST00000587339 LCE3CQ5T5A8 94 aa7.02□□□□□ -1.29
TRIM47-204ENST00000587339 SYNE2Q8WXH0 6885 aaKnown RBP7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 636.8 ms