RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 V9GYY9 64 aa5.45□□□□□ -1.54
LIG3-203ENST00000585370 CHKB-CPT1BH3BT56 60 aa5.43□□□□□ -1.54
LIG3-203ENST00000585370 Q1T7F1 81 aa5.42□□□□□ -1.54
LIG3-203ENST00000585370 SEC61BP60468 96 aaKnown RBP5.41□□□□□ -1.54
LIG3-203ENST00000585370 C4orf26Q17RF5 130 aa5.41□□□□□ -1.54
LIG3-203ENST00000585370 COX6B2Q6YFQ2 88 aa5.41□□□□□ -1.54
LIG3-203ENST00000585370 KRTAP9-6A0A140TA67 174 aa5.39□□□□□ -1.55
LIG3-203ENST00000585370 SPTSSBQ8NFR3 76 aa5.38□□□□□ -1.55
LIG3-203ENST00000585370 LOC100996750A0A140TA64 210 aa5.37□□□□□ -1.55
LIG3-203ENST00000585370 KRTAP4-6Q9BYQ5 205 aa5.37□□□□□ -1.55
LIG3-203ENST00000585370 MPLKIPQ8TAP9 179 aa5.36□□□□□ -1.55
LIG3-203ENST00000585370 FSIP2Q5CZC0 6907 aa5.35□□□□□ -1.55
LIG3-203ENST00000585370 KRTAP4-1Q9BYQ7 146 aa5.35□□□□□ -1.55
LIG3-203ENST00000585370 LINC01558Q9Y6Z2 57 aa5.34□□□□□ -1.55
LIG3-203ENST00000585370 KRTAP3-1Q9BYR8 98 aa5.33□□□□□ -1.56
LIG3-203ENST00000585370 RBM12B-AS1Q9P1G2 102 aa5.31□□□□□ -1.56
LIG3-203ENST00000585370 H1FX-AS1Q4G0G2 97 aa5.27□□□□□ -1.57
LIG3-203ENST00000585370 PRR15LQ9BU68 103 aa5.27□□□□□ -1.57
LIG3-203ENST00000585370 PSPHP1O15172 72 aa5.24□□□□□ -1.57
LIG3-203ENST00000585370 A0A1B0GU69 56 aa5.22□□□□□ -1.57
LIG3-203ENST00000585370 SEC61GP60059 68 aa5.22□□□□□ -1.57
LIG3-203ENST00000585370 KRTAP19-2Q3LHN2 52 aa5.22□□□□□ -1.57
LIG3-203ENST00000585370 S4R3F8 94 aa5.22□□□□□ -1.57
LIG3-203ENST00000585370 Q5VV11 94 aa5.21□□□□□ -1.58
LIG3-203ENST00000585370 CRCT1Q9UGL9 99 aa5.2□□□□□ -1.58
LIG3-203ENST00000585370 MT1HP80294 61 aa5.17□□□□□ -1.58
LIG3-203ENST00000585370 LCA10Q71F78 164 aa5.17□□□□□ -1.58
LIG3-203ENST00000585370 CSAG1Q6PB30 78 aa5.14□□□□□ -1.59
LIG3-203ENST00000585370 FLGP20930 4061 aaPredicted RBP5.13□□□□□ -1.59
LIG3-203ENST00000585370 A6NED7 52 aa5.12□□□□□ -1.59
LIG3-203ENST00000585370 UQCR11O14957 56 aa5.1□□□□□ -1.59
LIG3-203ENST00000585370 KRTAP10-6P60371 365 aaPredicted RBP5.09□□□□□ -1.59
LIG3-203ENST00000585370 BRK1Q8WUW1 75 aa5.09□□□□□ -1.59
LIG3-203ENST00000585370 CDC42SE1Q9NRR8 79 aa5.07□□□□□ -1.6
LIG3-203ENST00000585370 PRO0628Q9UI54 55 aa5.07□□□□□ -1.6
LIG3-203ENST00000585370 A0A1B0GU33 70 aa5.05□□□□□ -1.6
LIG3-203ENST00000585370 H0YAA0 97 aa5.04□□□□□ -1.6
LIG3-203ENST00000585370 SPATA8Q6RVD6 105 aa5.04□□□□□ -1.6
LIG3-203ENST00000585370 M0R2T5 61 aa5.03□□□□□ -1.6
LIG3-203ENST00000585370 MIR22HGQ0VDD5 57 aa5.02□□□□□ -1.61
LIG3-203ENST00000585370 ADM2Q7Z4H4 148 aa4.98□□□□□ -1.61
LIG3-203ENST00000585370 KRTAP4-8Q9BYQ9 185 aa4.93□□□□□ -1.62
LIG3-203ENST00000585370 M0QZ58 72 aa4.92□□□□□ -1.62
LIG3-203ENST00000585370 P0C880 135 aa4.92□□□□□ -1.62
LIG3-203ENST00000585370 SSPOA2VEC9 5147 aa4.91□□□□□ -1.62
LIG3-203ENST00000585370 A8MU10 97 aa4.9□□□□□ -1.63
LIG3-203ENST00000585370 USH2AO75445 5202 aa4.9□□□□□ -1.63
LIG3-203ENST00000585370 KRTAP9-8Q9BYQ0 159 aa4.89□□□□□ -1.63
LIG3-203ENST00000585370 K7ERS5 55 aa4.86□□□□□ -1.63
LIG3-203ENST00000585370 PMAIP1Q13794 54 aa4.86□□□□□ -1.63
LIG3-203ENST00000585370 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.85□□□□□ -1.63
LIG3-203ENST00000585370 CRIPTQ9P021 101 aa4.83□□□□□ -1.64
LIG3-203ENST00000585370 KRTAP9-7A8MTY7 169 aa4.82□□□□□ -1.64
LIG3-203ENST00000585370 KRTAP13-4Q3LI77 160 aa4.82□□□□□ -1.64
LIG3-203ENST00000585370 R4GN34 69 aa4.82□□□□□ -1.64
LIG3-203ENST00000585370 FCGBPQ9Y6R7 5405 aaPredicted RBP4.79□□□□□ -1.64
LIG3-203ENST00000585370 A6NN06 94 aa4.79□□□□□ -1.64
LIG3-203ENST00000585370 MT2AP02795 61 aa4.78□□□□□ -1.64
LIG3-203ENST00000585370 SVIPQ8NHG7 77 aa4.78□□□□□ -1.64
LIG3-203ENST00000585370 SYNE2Q8WXH0 6885 aaKnown RBP4.77□□□□□ -1.65
LIG3-203ENST00000585370 A0A0D9SG42 100 aa4.76□□□□□ -1.65
LIG3-203ENST00000585370 MACF1Q9UPN3 7388 aaKnown RBP4.75□□□□□ -1.65
LIG3-203ENST00000585370 MT1FP04733 61 aa4.75□□□□□ -1.65
LIG3-203ENST00000585370 KRTAP9-3Q9BYQ3 159 aa4.74□□□□□ -1.65
LIG3-203ENST00000585370 KRTAP19-1Q8IUB9 90 aa4.73□□□□□ -1.65
LIG3-203ENST00000585370 KRTAP4-12Q9BQ66 201 aa4.72□□□□□ -1.65
LIG3-203ENST00000585370 KRTAP10-10P60014 251 aa4.7□□□□□ -1.66
LIG3-203ENST00000585370 KRTAP12-1P59990 96 aa4.69□□□□□ -1.66
LIG3-203ENST00000585370 SPINT4Q6UDR6 99 aa4.68□□□□□ -1.66
LIG3-203ENST00000585370 LINC01554Q52M75 96 aa4.67□□□□□ -1.66
LIG3-203ENST00000585370 LCE3BQ5TA77 95 aa4.67□□□□□ -1.66
LIG3-203ENST00000585370 KTN1-AS1Q86SY8 53 aa4.67□□□□□ -1.66
LIG3-203ENST00000585370 KRTAP12-2P59991 146 aa4.65□□□□□ -1.67
LIG3-203ENST00000585370 SPRR2GQ9BYE4 73 aa4.64□□□□□ -1.67
LIG3-203ENST00000585370 ROMO1P60602 79 aa4.6□□□□□ -1.67
LIG3-203ENST00000585370 KRTAP9-9Q9BYP9 154 aa4.6□□□□□ -1.67
LIG3-203ENST00000585370 KRTAP9-4Q9BYQ2 154 aa4.6□□□□□ -1.67
LIG3-203ENST00000585370 KRTAP19-6Q3LI70 58 aa4.59□□□□□ -1.67
LIG3-203ENST00000585370 PLAC4Q8WY50 150 aa4.54□□□□□ -1.68
LIG3-203ENST00000585370 CAMK2N1Q7Z7J9 78 aa4.53□□□□□ -1.68
LIG3-203ENST00000585370 KRTAP4-8A0A0G2JLE6 195 aa4.52□□□□□ -1.69
LIG3-203ENST00000585370 KRTAP19-8Q3LI54 63 aa4.51□□□□□ -1.69
LIG3-203ENST00000585370 KRTAP6-3Q3LI67 103 aa4.47□□□□□ -1.69
LIG3-203ENST00000585370 PRAC1Q96KF2 57 aa4.45□□□□□ -1.7
LIG3-203ENST00000585370 NEBP20929 6669 aa4.45□□□□□ -1.7
LIG3-203ENST00000585370 C10orf95Q9H7T3 257 aa4.43□□□□□ -1.7
LIG3-203ENST00000585370 KRTAP25-1Q3LHN0 102 aa4.41□□□□□ -1.7
LIG3-203ENST00000585370 MT1BP07438 61 aa4.38□□□□□ -1.71
LIG3-203ENST00000585370 LCE1DQ5T752 114 aa4.38□□□□□ -1.71
LIG3-203ENST00000585370 MUC12Q9UKN1 5478 aa4.38□□□□□ -1.71
LIG3-203ENST00000585370 KRTAP4-7Q9BYR0 210 aa4.36□□□□□ -1.71
LIG3-203ENST00000585370 TNP1P09430 55 aa4.35□□□□□ -1.71
LIG3-203ENST00000585370 KRTAP23-1A1A580 65 aa4.31□□□□□ -1.72
LIG3-203ENST00000585370 PP632Q6XCG6 107 aa4.31□□□□□ -1.72
LIG3-203ENST00000585370 PRO2289Q9P1D8 64 aa4.31□□□□□ -1.72
LIG3-203ENST00000585370 KRTAP4-9Q9BYQ8 210 aa4.27□□□□□ -1.73
LIG3-203ENST00000585370 MT1XP80297 61 aa4.26□□□□□ -1.73
LIG3-203ENST00000585370 KRTAP10-5P60370 271 aa4.25□□□□□ -1.73
LIG3-203ENST00000585370 LCE4AQ5TA78 99 aa4.24□□□□□ -1.73
LIG3-203ENST00000585370 KMT2DO14686 5537 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 590.1 ms