RNA–Protein interactions for RNA: ENST00000582252.1

CCDC47-204, Transcript of coiled-coil domain containing 47, humanhuman

TSL 2 BASIC

Gene CCDC47, Length 1,719 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-204ENST00000582252 KRTAP3-1Q9BYR8 98 aa11.81□□□□□ -0.52
CCDC47-204ENST00000582252 HMCN2Q8NDA2 5059 aa11.8□□□□□ -0.52
CCDC47-204ENST00000582252 LRP2P98164 4655 aa11.78□□□□□ -0.52
CCDC47-204ENST00000582252 SEC61GP60059 68 aa11.7□□□□□ -0.54
CCDC47-204ENST00000582252 CDC42SE1Q9NRR8 79 aa11.69□□□□□ -0.54
CCDC47-204ENST00000582252 LCA10Q71F78 164 aa11.63□□□□□ -0.55
CCDC47-204ENST00000582252 UQCR11O14957 56 aa11.57□□□□□ -0.56
CCDC47-204ENST00000582252 SEC61BP60468 96 aaKnown RBP11.57□□□□□ -0.56
CCDC47-204ENST00000582252 MUC17Q685J3 4493 aa11.55□□□□□ -0.56
CCDC47-204ENST00000582252 A8MU10 97 aa11.54□□□□□ -0.56
CCDC47-204ENST00000582252 RBM12B-AS1Q9P1G2 102 aa11.49□□□□□ -0.57
CCDC47-204ENST00000582252 S4R3F8 94 aa11.49□□□□□ -0.57
CCDC47-204ENST00000582252 H1FX-AS1Q4G0G2 97 aa11.46□□□□□ -0.57
CCDC47-204ENST00000582252 MIR22HGQ0VDD5 57 aa11.46□□□□□ -0.58
CCDC47-204ENST00000582252 SPATA8Q6RVD6 105 aa11.46□□□□□ -0.58
CCDC47-204ENST00000582252 PMAIP1Q13794 54 aa11.38□□□□□ -0.59
CCDC47-204ENST00000582252 KRTAP3-3Q9BYR6 98 aa11.38□□□□□ -0.59
CCDC47-204ENST00000582252 A0A1B0GU33 70 aa11.33□□□□□ -0.6
CCDC47-204ENST00000582252 UBR4Q5T4S7 5183 aa11.26□□□□□ -0.61
CCDC47-204ENST00000582252 KRTAP4-1Q9BYQ7 146 aa11.23□□□□□ -0.61
CCDC47-204ENST00000582252 A6NN06 94 aa11.21□□□□□ -0.61
CCDC47-204ENST00000582252 CSAG1Q6PB30 78 aa11.18□□□□□ -0.62
CCDC47-204ENST00000582252 MUC2Q02817 5179 aa11.17□□□□□ -0.62
CCDC47-204ENST00000582252 H0YAA0 97 aa11.17□□□□□ -0.62
CCDC47-204ENST00000582252 RNF213Q63HN8 5207 aa11.15□□□□□ -0.62
CCDC47-204ENST00000582252 KRTAP10-6P60371 365 aaPredicted RBP11.12□□□□□ -0.63
CCDC47-204ENST00000582252 KRTAP3-2Q9BYR7 98 aa11.08□□□□□ -0.64
CCDC47-204ENST00000582252 KTN1-AS1Q86SY8 53 aa11.05□□□□□ -0.64
CCDC47-204ENST00000582252 ADM2Q7Z4H4 148 aa11.01□□□□□ -0.65
CCDC47-204ENST00000582252 P0C880 135 aa10.96□□□□□ -0.65
CCDC47-204ENST00000582252 K7ERS5 55 aa10.94□□□□□ -0.66
CCDC47-204ENST00000582252 KRTAP19-2Q3LHN2 52 aa10.91□□□□□ -0.66
CCDC47-204ENST00000582252 FLGP20930 4061 aaPredicted RBP10.89□□□□□ -0.67
CCDC47-204ENST00000582252 KRTAP13-4Q3LI77 160 aa10.86□□□□□ -0.67
CCDC47-204ENST00000582252 M0QZ58 72 aa10.81□□□□□ -0.68
CCDC47-204ENST00000582252 FAT4Q6V0I7 4981 aa10.78□□□□□ -0.68
CCDC47-204ENST00000582252 A0A0D9SG42 100 aa10.76□□□□□ -0.69
CCDC47-204ENST00000582252 LCE2CQ5TA81 110 aa10.75□□□□□ -0.69
CCDC47-204ENST00000582252 R4GN34 69 aa10.62□□□□□ -0.71
CCDC47-204ENST00000582252 MT1HP80294 61 aa10.57□□□□□ -0.72
CCDC47-204ENST00000582252 PRAC1Q96KF2 57 aa10.55□□□□□ -0.72
CCDC47-204ENST00000582252 KRTAP12-1P59990 96 aa10.51□□□□□ -0.73
CCDC47-204ENST00000582252 SPINT4Q6UDR6 99 aa10.51□□□□□ -0.73
CCDC47-204ENST00000582252 KRTAP12-2P59991 146 aa10.5□□□□□ -0.73
CCDC47-204ENST00000582252 M0R2T5 61 aa10.49□□□□□ -0.73
CCDC47-204ENST00000582252 ROMO1P60602 79 aa10.48□□□□□ -0.73
CCDC47-204ENST00000582252 LINC01554Q52M75 96 aa10.42□□□□□ -0.74
CCDC47-204ENST00000582252 LORP23490 312 aaPredicted RBP10.41□□□□□ -0.74
CCDC47-204ENST00000582252 CRIPTQ9P021 101 aa10.38□□□□□ -0.75
CCDC47-204ENST00000582252 LCE2AQ5TA79 106 aaPredicted RBP10.33□□□□□ -0.76
CCDC47-204ENST00000582252 KRTAP25-1Q3LHN0 102 aa10.26□□□□□ -0.77
CCDC47-204ENST00000582252 KRTAP9-8Q9BYQ0 159 aa10.14□□□□□ -0.79
CCDC47-204ENST00000582252 MT2AP02795 61 aa10.1□□□□□ -0.79
CCDC47-204ENST00000582252 MT1FP04733 61 aa10.02□□□□□ -0.8
CCDC47-204ENST00000582252 KRTAP10-10P60014 251 aa10.02□□□□□ -0.8
CCDC47-204ENST00000582252 CAMK2N1Q7Z7J9 78 aa10.02□□□□□ -0.81
CCDC47-204ENST00000582252 SPRR2GQ9BYE4 73 aa9.99□□□□□ -0.81
CCDC47-204ENST00000582252 C10orf95Q9H7T3 257 aa9.9□□□□□ -0.82
CCDC47-204ENST00000582252 KRTAP19-1Q8IUB9 90 aa9.86□□□□□ -0.83
CCDC47-204ENST00000582252 PLAC4Q8WY50 150 aa9.83□□□□□ -0.84
CCDC47-204ENST00000582252 KRTAP9-3Q9BYQ3 159 aa9.79□□□□□ -0.84
CCDC47-204ENST00000582252 KRTAP19-8Q3LI54 63 aa9.65□□□□□ -0.87
CCDC47-204ENST00000582252 TNP1P09430 55 aa9.61□□□□□ -0.87
CCDC47-204ENST00000582252 PP632Q6XCG6 107 aa9.6□□□□□ -0.87
CCDC47-204ENST00000582252 LCE2BO14633 110 aa9.53□□□□□ -0.88
CCDC47-204ENST00000582252 LCE2DQ5TA82 110 aaPredicted RBP9.48□□□□□ -0.89
CCDC47-204ENST00000582252 KRTAP23-1A1A580 65 aa9.45□□□□□ -0.9
CCDC47-204ENST00000582252 MT1BP07438 61 aa9.45□□□□□ -0.9
CCDC47-204ENST00000582252 USH2AO75445 5202 aa9.43□□□□□ -0.9
CCDC47-204ENST00000582252 KRTAP10-5P60370 271 aa9.24□□□□□ -0.93
CCDC47-204ENST00000582252 MT1XP80297 61 aa9.24□□□□□ -0.93
CCDC47-204ENST00000582252 KRTAP9-2Q9BYQ4 174 aa9.21□□□□□ -0.94
CCDC47-204ENST00000582252 PRO2289Q9P1D8 64 aa9.21□□□□□ -0.94
CCDC47-204ENST00000582252 FSIP2Q5CZC0 6907 aa9.19□□□□□ -0.94
CCDC47-204ENST00000582252 SSPOA2VEC9 5147 aa9.17□□□□□ -0.94
CCDC47-204ENST00000582252 KRTAP15-1Q3LI76 137 aa9.16□□□□□ -0.94
CCDC47-204ENST00000582252 KRTAP19-6Q3LI70 58 aa9.05□□□□□ -0.96
CCDC47-204ENST00000582252 LCE3AQ5TA76 89 aa9.05□□□□□ -0.96
CCDC47-204ENST00000582252 KRTAP10-12P60413 245 aa8.97□□□□□ -0.97
CCDC47-204ENST00000582252 KRTAP8-1Q8IUC2 63 aa8.9□□□□□ -0.98
CCDC47-204ENST00000582252 KRTAP10-7P60409 375 aaPredicted RBP8.89□□□□□ -0.99
CCDC47-204ENST00000582252 CRCT1Q9UGL9 99 aa8.86□□□□□ -0.99
CCDC47-204ENST00000582252 FCGBPQ9Y6R7 5405 aaPredicted RBP8.81□□□□□ -1
CCDC47-204ENST00000582252 KRTAP12-3P60328 96 aa8.7□□□□□ -1.02
CCDC47-204ENST00000582252 NDUFAF8A1L188 74 aa8.66□□□□□ -1.02
CCDC47-204ENST00000582252 LUZP6Q538Z0 58 aa8.64□□□□□ -1.03
CCDC47-204ENST00000582252 SPRR5A0A1B0GTR4 108 aa8.6□□□□□ -1.03
CCDC47-204ENST00000582252 KRTAP9-6A0A140TA67 174 aa8.58□□□□□ -1.04
CCDC47-204ENST00000582252 KMT2DO14686 5537 aa8.52□□□□□ -1.05
CCDC47-204ENST00000582252 MACF1Q9UPN3 7388 aaKnown RBP8.48□□□□□ -1.05
CCDC47-204ENST00000582252 KRTAP19-5Q3LI72 72 aa8.46□□□□□ -1.05
CCDC47-204ENST00000582252 KRTAP4-8A0A0G2JLE6 195 aa8.4□□□□□ -1.06
CCDC47-204ENST00000582252 KRTAP4-8Q9BYQ9 185 aa8.4□□□□□ -1.06
CCDC47-204ENST00000582252 H3BS24 57 aa8.32□□□□□ -1.08
CCDC47-204ENST00000582252 KRTAP19-7Q3SYF9 63 aa8.23□□□□□ -1.09
CCDC47-204ENST00000582252 SYNE2Q8WXH0 6885 aaKnown RBP8.22□□□□□ -1.09
CCDC47-204ENST00000582252 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.2□□□□□ -1.1
CCDC47-204ENST00000582252 KRTAP19-4Q3LI73 84 aa8.17□□□□□ -1.1
CCDC47-204ENST00000582252 LCE3CQ5T5A8 94 aa8.15□□□□□ -1.1
CCDC47-204ENST00000582252 MT1EP04732 61 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 199.1 ms