RNA–Protein interactions for RNA: ENST00000569575.5

RAB40C-212, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 2

Gene RAB40C, Length 692 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-212ENST00000569575 LCA10Q71F78 164 aa11.31□□□□□ -0.6
RAB40C-212ENST00000569575 H7BZZ5 65 aa11.29□□□□□ -0.6
RAB40C-212ENST00000569575 CCDC179H3BU77 68 aa11.25□□□□□ -0.61
RAB40C-212ENST00000569575 KRTAP3-3Q9BYR6 98 aa11.22□□□□□ -0.61
RAB40C-212ENST00000569575 CYSTM1Q9H1C7 97 aa11.18□□□□□ -0.62
RAB40C-212ENST00000569575 KRTAP9-8Q9BYQ0 159 aa11.16□□□□□ -0.62
RAB40C-212ENST00000569575 SPTSSBQ8NFR3 76 aa11.14□□□□□ -0.63
RAB40C-212ENST00000569575 ATP5EP56381 51 aaPredicted RBP11.11□□□□□ -0.63
RAB40C-212ENST00000569575 CHKB-CPT1BH3BT56 60 aa11.1□□□□□ -0.63
RAB40C-212ENST00000569575 H0YAA0 97 aa11.05□□□□□ -0.64
RAB40C-212ENST00000569575 MT2AP02795 61 aa11.05□□□□□ -0.64
RAB40C-212ENST00000569575 TMEM258P61165 79 aa11.03□□□□□ -0.64
RAB40C-212ENST00000569575 KRTAP10-10P60014 251 aa10.98□□□□□ -0.65
RAB40C-212ENST00000569575 COA5Q86WW8 74 aa10.98□□□□□ -0.65
RAB40C-212ENST00000569575 MT1FP04733 61 aa10.93□□□□□ -0.66
RAB40C-212ENST00000569575 LCE2DQ5TA82 110 aaPredicted RBP10.92□□□□□ -0.66
RAB40C-212ENST00000569575 PCP4P48539 62 aa10.9□□□□□ -0.66
RAB40C-212ENST00000569575 CRIPTQ9P021 101 aa10.84□□□□□ -0.67
RAB40C-212ENST00000569575 ADM2Q7Z4H4 148 aa10.8□□□□□ -0.68
RAB40C-212ENST00000569575 KRTAP9-3Q9BYQ3 159 aa10.79□□□□□ -0.68
RAB40C-212ENST00000569575 KRTAP9-2Q9BYQ4 174 aa10.7□□□□□ -0.7
RAB40C-212ENST00000569575 KRTAP3-2Q9BYR7 98 aa10.66□□□□□ -0.7
RAB40C-212ENST00000569575 SERP1Q9Y6X1 66 aa10.66□□□□□ -0.7
RAB40C-212ENST00000569575 SEC61GP60059 68 aa10.65□□□□□ -0.7
RAB40C-212ENST00000569575 SPRR2GQ9BYE4 73 aa10.64□□□□□ -0.71
RAB40C-212ENST00000569575 P0C880 135 aa10.6□□□□□ -0.71
RAB40C-212ENST00000569575 KRTAP19-1Q8IUB9 90 aa10.56□□□□□ -0.72
RAB40C-212ENST00000569575 R4GN34 69 aa10.54□□□□□ -0.72
RAB40C-212ENST00000569575 LCE2BO14633 110 aa10.52□□□□□ -0.73
RAB40C-212ENST00000569575 M0QZ58 72 aa10.49□□□□□ -0.73
RAB40C-212ENST00000569575 A0A1B0GU69 56 aa10.46□□□□□ -0.73
RAB40C-212ENST00000569575 RPS28P62857 69 aaKnown RBP10.44□□□□□ -0.74
RAB40C-212ENST00000569575 KRTAP19-8Q3LI54 63 aa10.44□□□□□ -0.74
RAB40C-212ENST00000569575 PRR15LQ9BU68 103 aa10.44□□□□□ -0.74
RAB40C-212ENST00000569575 LINC01558Q9Y6Z2 57 aa10.43□□□□□ -0.74
RAB40C-212ENST00000569575 Q5VV11 94 aa10.38□□□□□ -0.75
RAB40C-212ENST00000569575 V9GYY9 64 aa10.38□□□□□ -0.75
RAB40C-212ENST00000569575 A0A1B0GU33 70 aa10.33□□□□□ -0.76
RAB40C-212ENST00000569575 SMIM26A0A096LP01 95 aa10.32□□□□□ -0.76
RAB40C-212ENST00000569575 CRCT1Q9UGL9 99 aa10.27□□□□□ -0.77
RAB40C-212ENST00000569575 Q1T7F1 81 aa10.26□□□□□ -0.77
RAB40C-212ENST00000569575 MT1BP07438 61 aa10.25□□□□□ -0.77
RAB40C-212ENST00000569575 A6NN06 94 aa10.2□□□□□ -0.78
RAB40C-212ENST00000569575 LINC01554Q52M75 96 aa10.18□□□□□ -0.78
RAB40C-212ENST00000569575 PLAC4Q8WY50 150 aa10.18□□□□□ -0.78
RAB40C-212ENST00000569575 USH2AO75445 5202 aa10.16□□□□□ -0.78
RAB40C-212ENST00000569575 KRTAP19-6Q3LI70 58 aa10.15□□□□□ -0.78
RAB40C-212ENST00000569575 KRTAP13-4Q3LI77 160 aa10.15□□□□□ -0.78
RAB40C-212ENST00000569575 KRTAP9-6A0A140TA67 174 aa10.12□□□□□ -0.79
RAB40C-212ENST00000569575 FSIP2Q5CZC0 6907 aa10.1□□□□□ -0.79
RAB40C-212ENST00000569575 UQCR11O14957 56 aa10.08□□□□□ -0.8
RAB40C-212ENST00000569575 SPATA8Q6RVD6 105 aa10.07□□□□□ -0.8
RAB40C-212ENST00000569575 PSPHP1O15172 72 aa9.98□□□□□ -0.81
RAB40C-212ENST00000569575 PRO2289Q9P1D8 64 aa9.95□□□□□ -0.82
RAB40C-212ENST00000569575 A0A0D9SG42 100 aa9.93□□□□□ -0.82
RAB40C-212ENST00000569575 KRTAP10-5P60370 271 aa9.93□□□□□ -0.82
RAB40C-212ENST00000569575 SSPOA2VEC9 5147 aa9.92□□□□□ -0.82
RAB40C-212ENST00000569575 MIR22HGQ0VDD5 57 aa9.86□□□□□ -0.83
RAB40C-212ENST00000569575 KRTAP12-1P59990 96 aa9.82□□□□□ -0.84
RAB40C-212ENST00000569575 A8MU10 97 aa9.8□□□□□ -0.84
RAB40C-212ENST00000569575 SPINT4Q6UDR6 99 aa9.8□□□□□ -0.84
RAB40C-212ENST00000569575 CAMK2N1Q7Z7J9 78 aa9.79□□□□□ -0.84
RAB40C-212ENST00000569575 MT1XP80297 61 aa9.78□□□□□ -0.84
RAB40C-212ENST00000569575 A6NED7 52 aa9.76□□□□□ -0.85
RAB40C-212ENST00000569575 KRTAP12-2P59991 146 aa9.72□□□□□ -0.85
RAB40C-212ENST00000569575 FCGBPQ9Y6R7 5405 aaPredicted RBP9.67□□□□□ -0.86
RAB40C-212ENST00000569575 K7ERS5 55 aa9.65□□□□□ -0.86
RAB40C-212ENST00000569575 CDC42SE1Q9NRR8 79 aa9.53□□□□□ -0.88
RAB40C-212ENST00000569575 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.49□□□□□ -0.89
RAB40C-212ENST00000569575 KRTAP10-12P60413 245 aa9.37□□□□□ -0.91
RAB40C-212ENST00000569575 KRTAP10-7P60409 375 aaPredicted RBP9.31□□□□□ -0.92
RAB40C-212ENST00000569575 C10orf95Q9H7T3 257 aa9.3□□□□□ -0.92
RAB40C-212ENST00000569575 MACF1Q9UPN3 7388 aaKnown RBP9.27□□□□□ -0.93
RAB40C-212ENST00000569575 TNP1P09430 55 aa9.26□□□□□ -0.93
RAB40C-212ENST00000569575 SVIPQ8NHG7 77 aa9.24□□□□□ -0.93
RAB40C-212ENST00000569575 KRTAP6-3Q3LI67 103 aa9.2□□□□□ -0.94
RAB40C-212ENST00000569575 KRTAP9-7A8MTY7 169 aa9.18□□□□□ -0.94
RAB40C-212ENST00000569575 BRK1Q8WUW1 75 aa9.16□□□□□ -0.94
RAB40C-212ENST00000569575 KRTAP25-1Q3LHN0 102 aa9.12□□□□□ -0.95
RAB40C-212ENST00000569575 KRTAP8-1Q8IUC2 63 aa9.12□□□□□ -0.95
RAB40C-212ENST00000569575 KRTAP4-8A0A0G2JLE6 195 aa9.07□□□□□ -0.96
RAB40C-212ENST00000569575 KRTAP5-9P26371 169 aa9.07□□□□□ -0.96
RAB40C-212ENST00000569575 KRTAP4-8Q9BYQ9 185 aa9.07□□□□□ -0.96
RAB40C-212ENST00000569575 ROMO1P60602 79 aa9.04□□□□□ -0.96
RAB40C-212ENST00000569575 SYNE2Q8WXH0 6885 aaKnown RBP9.02□□□□□ -0.97
RAB40C-212ENST00000569575 KRTAP23-1A1A580 65 aa8.91□□□□□ -0.98
RAB40C-212ENST00000569575 SPRR2FQ96RM1 72 aa8.88□□□□□ -0.99
RAB40C-212ENST00000569575 KMT2DO14686 5537 aa8.85□□□□□ -0.99
RAB40C-212ENST00000569575 LCE3AQ5TA76 89 aa8.83□□□□□ -1
RAB40C-212ENST00000569575 KRTAP19-7Q3SYF9 63 aa8.73□□□□□ -1.01
RAB40C-212ENST00000569575 PP632Q6XCG6 107 aa8.73□□□□□ -1.01
RAB40C-212ENST00000569575 PRO0628Q9UI54 55 aa8.73□□□□□ -1.01
RAB40C-212ENST00000569575 PMAIP1Q13794 54 aa8.71□□□□□ -1.02
RAB40C-212ENST00000569575 KRTAP19-5Q3LI72 72 aa8.68□□□□□ -1.02
RAB40C-212ENST00000569575 MT1EP04732 61 aa8.64□□□□□ -1.03
RAB40C-212ENST00000569575 SPRR2EP22531 72 aa8.59□□□□□ -1.03
RAB40C-212ENST00000569575 SPRR2BP35325 72 aa8.59□□□□□ -1.03
RAB40C-212ENST00000569575 SPRR2AP35326 72 aa8.59□□□□□ -1.03
RAB40C-212ENST00000569575 LCE1AQ5T7P2 110 aa8.59□□□□□ -1.03
RAB40C-212ENST00000569575 KRTAP12-3P60328 96 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms