RNA–Protein interactions for RNA: ENST00000568452.6

CLN3-233, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,616 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-233ENST00000568452 H1FX-AS1Q4G0G2 97 aa9.57□□□□□ -0.88
CLN3-233ENST00000568452 SPTSSBQ8NFR3 76 aa9.57□□□□□ -0.88
CLN3-233ENST00000568452 UBR4Q5T4S7 5183 aa9.56□□□□□ -0.88
CLN3-233ENST00000568452 S4R3F8 94 aa9.5□□□□□ -0.89
CLN3-233ENST00000568452 BRK1Q8WUW1 75 aa9.47□□□□□ -0.89
CLN3-233ENST00000568452 LINC01558Q9Y6Z2 57 aa9.45□□□□□ -0.9
CLN3-233ENST00000568452 LCA10Q71F78 164 aa9.44□□□□□ -0.9
CLN3-233ENST00000568452 RNF213Q63HN8 5207 aa9.43□□□□□ -0.9
CLN3-233ENST00000568452 KRTAP3-3Q9BYR6 98 aa9.38□□□□□ -0.91
CLN3-233ENST00000568452 KRTAP19-2Q3LHN2 52 aa9.37□□□□□ -0.91
CLN3-233ENST00000568452 PRR15LQ9BU68 103 aa9.35□□□□□ -0.91
CLN3-233ENST00000568452 MUC2Q02817 5179 aa9.34□□□□□ -0.91
CLN3-233ENST00000568452 PSPHP1O15172 72 aa9.32□□□□□ -0.92
CLN3-233ENST00000568452 A0A1B0GU69 56 aa9.31□□□□□ -0.92
CLN3-233ENST00000568452 CSAG1Q6PB30 78 aa9.31□□□□□ -0.92
CLN3-233ENST00000568452 SEC61GP60059 68 aa9.3□□□□□ -0.92
CLN3-233ENST00000568452 Q5VV11 94 aa9.27□□□□□ -0.92
CLN3-233ENST00000568452 LCE2CQ5TA81 110 aa9.16□□□□□ -0.94
CLN3-233ENST00000568452 FLGP20930 4061 aaPredicted RBP9.1□□□□□ -0.95
CLN3-233ENST00000568452 H0YAA0 97 aa9.1□□□□□ -0.95
CLN3-233ENST00000568452 A6NED7 52 aa9.09□□□□□ -0.95
CLN3-233ENST00000568452 CDC42SE1Q9NRR8 79 aa9.08□□□□□ -0.96
CLN3-233ENST00000568452 ADM2Q7Z4H4 148 aa9.05□□□□□ -0.96
CLN3-233ENST00000568452 KRTAP3-2Q9BYR7 98 aa9.05□□□□□ -0.96
CLN3-233ENST00000568452 UQCR11O14957 56 aa9.04□□□□□ -0.96
CLN3-233ENST00000568452 KRTAP10-6P60371 365 aaPredicted RBP9.04□□□□□ -0.96
CLN3-233ENST00000568452 PMAIP1Q13794 54 aa9.04□□□□□ -0.96
CLN3-233ENST00000568452 FAT4Q6V0I7 4981 aa9.04□□□□□ -0.96
CLN3-233ENST00000568452 A0A1B0GU33 70 aa9.02□□□□□ -0.96
CLN3-233ENST00000568452 MT1HP80294 61 aa8.99□□□□□ -0.97
CLN3-233ENST00000568452 P0C880 135 aa8.97□□□□□ -0.97
CLN3-233ENST00000568452 M0R2T5 61 aa8.96□□□□□ -0.98
CLN3-233ENST00000568452 MIR22HGQ0VDD5 57 aa8.92□□□□□ -0.98
CLN3-233ENST00000568452 SPATA8Q6RVD6 105 aa8.9□□□□□ -0.99
CLN3-233ENST00000568452 KTN1-AS1Q86SY8 53 aa8.88□□□□□ -0.99
CLN3-233ENST00000568452 A8MU10 97 aa8.87□□□□□ -0.99
CLN3-233ENST00000568452 LCE2AQ5TA79 106 aaPredicted RBP8.87□□□□□ -0.99
CLN3-233ENST00000568452 A6NN06 94 aa8.86□□□□□ -0.99
CLN3-233ENST00000568452 M0QZ58 72 aa8.82□□□□□ -1
CLN3-233ENST00000568452 KRTAP13-4Q3LI77 160 aa8.77□□□□□ -1.01
CLN3-233ENST00000568452 R4GN34 69 aa8.76□□□□□ -1.01
CLN3-233ENST00000568452 CRIPTQ9P021 101 aa8.73□□□□□ -1.01
CLN3-233ENST00000568452 LORP23490 312 aaPredicted RBP8.7□□□□□ -1.02
CLN3-233ENST00000568452 KRTAP9-8Q9BYQ0 159 aa8.65□□□□□ -1.02
CLN3-233ENST00000568452 A0A0D9SG42 100 aa8.64□□□□□ -1.03
CLN3-233ENST00000568452 MT2AP02795 61 aa8.64□□□□□ -1.03
CLN3-233ENST00000568452 KRTAP10-10P60014 251 aa8.6□□□□□ -1.03
CLN3-233ENST00000568452 K7ERS5 55 aa8.58□□□□□ -1.04
CLN3-233ENST00000568452 MT1FP04733 61 aa8.58□□□□□ -1.04
CLN3-233ENST00000568452 LINC01554Q52M75 96 aa8.57□□□□□ -1.04
CLN3-233ENST00000568452 SPRR2GQ9BYE4 73 aa8.49□□□□□ -1.05
CLN3-233ENST00000568452 KRTAP12-1P59990 96 aa8.47□□□□□ -1.05
CLN3-233ENST00000568452 SPINT4Q6UDR6 99 aa8.46□□□□□ -1.06
CLN3-233ENST00000568452 KRTAP12-2P59991 146 aa8.43□□□□□ -1.06
CLN3-233ENST00000568452 KRTAP19-1Q8IUB9 90 aa8.43□□□□□ -1.06
CLN3-233ENST00000568452 KRTAP9-3Q9BYQ3 159 aa8.35□□□□□ -1.07
CLN3-233ENST00000568452 KRTAP19-8Q3LI54 63 aa8.27□□□□□ -1.09
CLN3-233ENST00000568452 PLAC4Q8WY50 150 aa8.25□□□□□ -1.09
CLN3-233ENST00000568452 PRAC1Q96KF2 57 aa8.25□□□□□ -1.09
CLN3-233ENST00000568452 LCE2DQ5TA82 110 aaPredicted RBP8.25□□□□□ -1.09
CLN3-233ENST00000568452 CAMK2N1Q7Z7J9 78 aa8.21□□□□□ -1.09
CLN3-233ENST00000568452 KRTAP9-2Q9BYQ4 174 aa8.2□□□□□ -1.1
CLN3-233ENST00000568452 ROMO1P60602 79 aa8.18□□□□□ -1.1
CLN3-233ENST00000568452 MT1BP07438 61 aa8.13□□□□□ -1.11
CLN3-233ENST00000568452 LCE2BO14633 110 aa8.09□□□□□ -1.11
CLN3-233ENST00000568452 KRTAP25-1Q3LHN0 102 aa8.01□□□□□ -1.13
CLN3-233ENST00000568452 C10orf95Q9H7T3 257 aa8.01□□□□□ -1.13
CLN3-233ENST00000568452 FSIP2Q5CZC0 6907 aa7.98□□□□□ -1.13
CLN3-233ENST00000568452 USH2AO75445 5202 aa7.94□□□□□ -1.14
CLN3-233ENST00000568452 MT1XP80297 61 aa7.86□□□□□ -1.15
CLN3-233ENST00000568452 PRO2289Q9P1D8 64 aa7.86□□□□□ -1.15
CLN3-233ENST00000568452 CRCT1Q9UGL9 99 aa7.85□□□□□ -1.15
CLN3-233ENST00000568452 KRTAP10-5P60370 271 aa7.85□□□□□ -1.15
CLN3-233ENST00000568452 TNP1P09430 55 aa7.82□□□□□ -1.16
CLN3-233ENST00000568452 KRTAP9-6A0A140TA67 174 aa7.76□□□□□ -1.17
CLN3-233ENST00000568452 SSPOA2VEC9 5147 aa7.73□□□□□ -1.17
CLN3-233ENST00000568452 KRTAP19-6Q3LI70 58 aa7.7□□□□□ -1.18
CLN3-233ENST00000568452 PP632Q6XCG6 107 aa7.61□□□□□ -1.19
CLN3-233ENST00000568452 KRTAP23-1A1A580 65 aa7.6□□□□□ -1.19
CLN3-233ENST00000568452 KRTAP10-7P60409 375 aaPredicted RBP7.53□□□□□ -1.2
CLN3-233ENST00000568452 KRTAP10-12P60413 245 aa7.5□□□□□ -1.21
CLN3-233ENST00000568452 FCGBPQ9Y6R7 5405 aaPredicted RBP7.49□□□□□ -1.21
CLN3-233ENST00000568452 LCE3AQ5TA76 89 aa7.44□□□□□ -1.22
CLN3-233ENST00000568452 MACF1Q9UPN3 7388 aaKnown RBP7.32□□□□□ -1.24
CLN3-233ENST00000568452 KRTAP8-1Q8IUC2 63 aa7.31□□□□□ -1.24
CLN3-233ENST00000568452 H3BS24 57 aa7.28□□□□□ -1.24
CLN3-233ENST00000568452 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.26□□□□□ -1.25
CLN3-233ENST00000568452 KRTAP15-1Q3LI76 137 aa7.26□□□□□ -1.25
CLN3-233ENST00000568452 KRTAP4-8A0A0G2JLE6 195 aa7.22□□□□□ -1.25
CLN3-233ENST00000568452 KRTAP4-8Q9BYQ9 185 aa7.22□□□□□ -1.25
CLN3-233ENST00000568452 KRTAP12-3P60328 96 aa7.16□□□□□ -1.26
CLN3-233ENST00000568452 SYNE2Q8WXH0 6885 aaKnown RBP7.13□□□□□ -1.27
CLN3-233ENST00000568452 KRTAP19-5Q3LI72 72 aa7.11□□□□□ -1.27
CLN3-233ENST00000568452 KMT2DO14686 5537 aa7.09□□□□□ -1.27
CLN3-233ENST00000568452 KRTAP9-7A8MTY7 169 aa7.04□□□□□ -1.28
CLN3-233ENST00000568452 KRTAP19-7Q3SYF9 63 aa7.01□□□□□ -1.29
CLN3-233ENST00000568452 NDUFAF8A1L188 74 aa6.98□□□□□ -1.29
CLN3-233ENST00000568452 KRTAP6-3Q3LI67 103 aa6.96□□□□□ -1.3
CLN3-233ENST00000568452 MT1EP04732 61 aa6.9□□□□□ -1.31
CLN3-233ENST00000568452 SPRR2FQ96RM1 72 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms