RNA–Protein interactions for RNA: ENST00000563455.1

SMPD3-205, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 4

Gene SMPD3, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-205ENST00000563455 RBM12B-AS1Q9P1G2 102 aa7.16□□□□□ -1.26
SMPD3-205ENST00000563455 MUC17Q685J3 4493 aa7.16□□□□□ -1.26
SMPD3-205ENST00000563455 FAT4Q6V0I7 4981 aa7.16□□□□□ -1.26
SMPD3-205ENST00000563455 LINC01558Q9Y6Z2 57 aa7.13□□□□□ -1.27
SMPD3-205ENST00000563455 MPLKIPQ8TAP9 179 aa7.11□□□□□ -1.27
SMPD3-205ENST00000563455 PRR15LQ9BU68 103 aa7.1□□□□□ -1.27
SMPD3-205ENST00000563455 KRTAP3-1Q9BYR8 98 aa7.1□□□□□ -1.27
SMPD3-205ENST00000563455 H1FX-AS1Q4G0G2 97 aa7.07□□□□□ -1.28
SMPD3-205ENST00000563455 SEC61GP60059 68 aa7.04□□□□□ -1.28
SMPD3-205ENST00000563455 A0A1B0GU69 56 aa6.99□□□□□ -1.29
SMPD3-205ENST00000563455 S4R3F8 94 aa6.99□□□□□ -1.29
SMPD3-205ENST00000563455 PSPHP1O15172 72 aa6.96□□□□□ -1.3
SMPD3-205ENST00000563455 KRTAP4-1Q9BYQ7 146 aa6.96□□□□□ -1.3
SMPD3-205ENST00000563455 LCE2DQ5TA82 110 aaPredicted RBP6.95□□□□□ -1.3
SMPD3-205ENST00000563455 Q5VV11 94 aa6.94□□□□□ -1.3
SMPD3-205ENST00000563455 CSAG1Q6PB30 78 aa6.91□□□□□ -1.3
SMPD3-205ENST00000563455 LCA10Q71F78 164 aa6.9□□□□□ -1.3
SMPD3-205ENST00000563455 FSIP2Q5CZC0 6907 aa6.87□□□□□ -1.31
SMPD3-205ENST00000563455 A6NED7 52 aa6.85□□□□□ -1.31
SMPD3-205ENST00000563455 UQCR11O14957 56 aa6.85□□□□□ -1.31
SMPD3-205ENST00000563455 KRTAP3-3Q9BYR6 98 aa6.85□□□□□ -1.31
SMPD3-205ENST00000563455 LCE2CQ5TA81 110 aa6.84□□□□□ -1.31
SMPD3-205ENST00000563455 CRCT1Q9UGL9 99 aa6.83□□□□□ -1.32
SMPD3-205ENST00000563455 H0YAA0 97 aa6.81□□□□□ -1.32
SMPD3-205ENST00000563455 M0R2T5 61 aa6.81□□□□□ -1.32
SMPD3-205ENST00000563455 MT1HP80294 61 aa6.81□□□□□ -1.32
SMPD3-205ENST00000563455 KRTAP19-2Q3LHN2 52 aa6.79□□□□□ -1.32
SMPD3-205ENST00000563455 BRK1Q8WUW1 75 aa6.79□□□□□ -1.32
SMPD3-205ENST00000563455 CDC42SE1Q9NRR8 79 aa6.78□□□□□ -1.32
SMPD3-205ENST00000563455 PRO0628Q9UI54 55 aa6.78□□□□□ -1.32
SMPD3-205ENST00000563455 A0A1B0GU33 70 aa6.75□□□□□ -1.33
SMPD3-205ENST00000563455 SPATA8Q6RVD6 105 aa6.73□□□□□ -1.33
SMPD3-205ENST00000563455 KRTAP10-6P60371 365 aaPredicted RBP6.72□□□□□ -1.33
SMPD3-205ENST00000563455 LORP23490 312 aaPredicted RBP6.71□□□□□ -1.34
SMPD3-205ENST00000563455 MIR22HGQ0VDD5 57 aa6.71□□□□□ -1.34
SMPD3-205ENST00000563455 M0QZ58 72 aa6.64□□□□□ -1.35
SMPD3-205ENST00000563455 ADM2Q7Z4H4 148 aa6.64□□□□□ -1.35
SMPD3-205ENST00000563455 KRTAP3-2Q9BYR7 98 aa6.63□□□□□ -1.35
SMPD3-205ENST00000563455 K7ERS5 55 aa6.56□□□□□ -1.36
SMPD3-205ENST00000563455 CRIPTQ9P021 101 aa6.55□□□□□ -1.36
SMPD3-205ENST00000563455 P0C880 135 aa6.54□□□□□ -1.36
SMPD3-205ENST00000563455 FLGP20930 4061 aaPredicted RBP6.54□□□□□ -1.36
SMPD3-205ENST00000563455 PMAIP1Q13794 54 aa6.48□□□□□ -1.37
SMPD3-205ENST00000563455 R4GN34 69 aa6.48□□□□□ -1.37
SMPD3-205ENST00000563455 A8MU10 97 aa6.45□□□□□ -1.38
SMPD3-205ENST00000563455 KRTAP9-8Q9BYQ0 159 aa6.41□□□□□ -1.38
SMPD3-205ENST00000563455 KRTAP13-4Q3LI77 160 aa6.39□□□□□ -1.39
SMPD3-205ENST00000563455 KRTAP9-7A8MTY7 169 aa6.38□□□□□ -1.39
SMPD3-205ENST00000563455 A6NN06 94 aa6.37□□□□□ -1.39
SMPD3-205ENST00000563455 SVIPQ8NHG7 77 aa6.36□□□□□ -1.39
SMPD3-205ENST00000563455 A0A0D9SG42 100 aa6.33□□□□□ -1.4
SMPD3-205ENST00000563455 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.32□□□□□ -1.4
SMPD3-205ENST00000563455 USH2AO75445 5202 aa6.32□□□□□ -1.4
SMPD3-205ENST00000563455 KRTAP10-10P60014 251 aa6.31□□□□□ -1.4
SMPD3-205ENST00000563455 MT2AP02795 61 aa6.3□□□□□ -1.4
SMPD3-205ENST00000563455 SSPOA2VEC9 5147 aa6.25□□□□□ -1.41
SMPD3-205ENST00000563455 KRTAP12-1P59990 96 aa6.25□□□□□ -1.41
SMPD3-205ENST00000563455 KTN1-AS1Q86SY8 53 aa6.25□□□□□ -1.41
SMPD3-205ENST00000563455 LINC01554Q52M75 96 aa6.24□□□□□ -1.41
SMPD3-205ENST00000563455 SPINT4Q6UDR6 99 aa6.24□□□□□ -1.41
SMPD3-205ENST00000563455 MT1FP04733 61 aa6.23□□□□□ -1.41
SMPD3-205ENST00000563455 SPRR2GQ9BYE4 73 aa6.23□□□□□ -1.41
SMPD3-205ENST00000563455 KRTAP9-3Q9BYQ3 159 aa6.22□□□□□ -1.41
SMPD3-205ENST00000563455 LCE2BO14633 110 aa6.2□□□□□ -1.42
SMPD3-205ENST00000563455 KRTAP19-1Q8IUB9 90 aa6.2□□□□□ -1.42
SMPD3-205ENST00000563455 FCGBPQ9Y6R7 5405 aaPredicted RBP6.2□□□□□ -1.42
SMPD3-205ENST00000563455 KRTAP12-2P59991 146 aa6.19□□□□□ -1.42
SMPD3-205ENST00000563455 ROMO1P60602 79 aa6.17□□□□□ -1.42
SMPD3-205ENST00000563455 PLAC4Q8WY50 150 aa6.11□□□□□ -1.43
SMPD3-205ENST00000563455 MACF1Q9UPN3 7388 aaKnown RBP6.11□□□□□ -1.43
SMPD3-205ENST00000563455 CAMK2N1Q7Z7J9 78 aa6.09□□□□□ -1.43
SMPD3-205ENST00000563455 SYNE2Q8WXH0 6885 aaKnown RBP6.08□□□□□ -1.44
SMPD3-205ENST00000563455 KRTAP19-6Q3LI70 58 aa6.07□□□□□ -1.44
SMPD3-205ENST00000563455 KRTAP19-8Q3LI54 63 aa6.04□□□□□ -1.44
SMPD3-205ENST00000563455 KRTAP25-1Q3LHN0 102 aa5.93□□□□□ -1.46
SMPD3-205ENST00000563455 KRTAP6-3Q3LI67 103 aa5.92□□□□□ -1.46
SMPD3-205ENST00000563455 C10orf95Q9H7T3 257 aa5.88□□□□□ -1.47
SMPD3-205ENST00000563455 PRAC1Q96KF2 57 aa5.87□□□□□ -1.47
SMPD3-205ENST00000563455 TNP1P09430 55 aa5.85□□□□□ -1.47
SMPD3-205ENST00000563455 MT1BP07438 61 aa5.84□□□□□ -1.47
SMPD3-205ENST00000563455 PRO2289Q9P1D8 64 aa5.84□□□□□ -1.47
SMPD3-205ENST00000563455 PP632Q6XCG6 107 aa5.83□□□□□ -1.48
SMPD3-205ENST00000563455 KRTAP23-1A1A580 65 aa5.82□□□□□ -1.48
SMPD3-205ENST00000563455 NEBP20929 6669 aa5.77□□□□□ -1.49
SMPD3-205ENST00000563455 MT1XP80297 61 aa5.68□□□□□ -1.5
SMPD3-205ENST00000563455 KRTAP10-5P60370 271 aa5.67□□□□□ -1.5
SMPD3-205ENST00000563455 MUC12Q9UKN1 5478 aa5.58□□□□□ -1.52
SMPD3-205ENST00000563455 KRTAP20-1Q3LI63 56 aa5.55□□□□□ -1.52
SMPD3-205ENST00000563455 KRTAP5-9P26371 169 aa5.54□□□□□ -1.52
SMPD3-205ENST00000563455 KRTAP10-12P60413 245 aa5.49□□□□□ -1.53
SMPD3-205ENST00000563455 MDN1Q9NU22 5596 aa5.46□□□□□ -1.54
SMPD3-205ENST00000563455 KMT2DO14686 5537 aa5.46□□□□□ -1.54
SMPD3-205ENST00000563455 KRTAP8-1Q8IUC2 63 aa5.44□□□□□ -1.54
SMPD3-205ENST00000563455 LCE3AQ5TA76 89 aa5.41□□□□□ -1.54
SMPD3-205ENST00000563455 KRTAP2-3P0C7H8 128 aa5.4□□□□□ -1.54
SMPD3-205ENST00000563455 KRTAP10-7P60409 375 aaPredicted RBP5.4□□□□□ -1.54
SMPD3-205ENST00000563455 KRTAP2-4Q9BYR9 128 aa5.4□□□□□ -1.54
SMPD3-205ENST00000563455 GPR98Q8WXG9 6306 aa5.39□□□□□ -1.55
SMPD3-205ENST00000563455 SPRR2FQ96RM1 72 aa5.35□□□□□ -1.55
SMPD3-205ENST00000563455 SPRR2EP22531 72 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms