RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 RETNLBQ9BQ08 111 aa4.07□□□□□ -1.76
VPS39-204ENST00000561818 PRO0628Q9UI54 55 aa4.07□□□□□ -1.76
VPS39-204ENST00000561818 SPINK7P58062 85 aa4.05□□□□□ -1.76
VPS39-204ENST00000561818 RYR3Q15413 4870 aa4.04□□□□□ -1.76
VPS39-204ENST00000561818 LINC01558Q9Y6Z2 57 aa4.04□□□□□ -1.76
VPS39-204ENST00000561818 SEC61GP60059 68 aa4.03□□□□□ -1.76
VPS39-204ENST00000561818 MPLKIPQ8TAP9 179 aa4.03□□□□□ -1.76
VPS39-204ENST00000561818 DMBT1Q9UGM3 2413 aaPredicted RBP4.03□□□□□ -1.76
VPS39-204ENST00000561818 KRTAP4-2Q9BYR5 136 aa4.02□□□□□ -1.77
VPS39-204ENST00000561818 TNXBP22105 4242 aa4.02□□□□□ -1.77
VPS39-204ENST00000561818 COX6B2Q6YFQ2 88 aa4.01□□□□□ -1.77
VPS39-204ENST00000561818 SEC61BP60468 96 aaKnown RBP4□□□□□ -1.77
VPS39-204ENST00000561818 RBM12B-AS1Q9P1G2 102 aa3.98□□□□□ -1.77
VPS39-204ENST00000561818 A0A1B0GU69 56 aa3.97□□□□□ -1.77
VPS39-204ENST00000561818 KRTAP4-11Q9BYQ6 195 aa3.97□□□□□ -1.77
VPS39-204ENST00000561818 KIAA1109Q2LD37 5005 aa3.97□□□□□ -1.77
VPS39-204ENST00000561818 FAT3Q8TDW7 4589 aa3.96□□□□□ -1.78
VPS39-204ENST00000561818 PSPHP1O15172 72 aa3.94□□□□□ -1.78
VPS39-204ENST00000561818 LCE5AQ5TCM9 118 aa3.93□□□□□ -1.78
VPS39-204ENST00000561818 Q5VV11 94 aa3.93□□□□□ -1.78
VPS39-204ENST00000561818 A6NED7 52 aa3.92□□□□□ -1.78
VPS39-204ENST00000561818 BRK1Q8WUW1 75 aa3.92□□□□□ -1.78
VPS39-204ENST00000561818 KRTAP9-3Q9BYQ3 159 aa3.92□□□□□ -1.78
VPS39-204ENST00000561818 LRP1Q07954 4544 aaKnown RBP3.91□□□□□ -1.78
VPS39-204ENST00000561818 UQCR11O14957 56 aa3.91□□□□□ -1.78
VPS39-204ENST00000561818 CDC42SE1Q9NRR8 79 aa3.9□□□□□ -1.79
VPS39-204ENST00000561818 MYCBP2O75592 4640 aa3.89□□□□□ -1.79
VPS39-204ENST00000561818 EPPK1P58107 5090 aaKnown RBP3.89□□□□□ -1.79
VPS39-204ENST00000561818 H1FX-AS1Q4G0G2 97 aa3.89□□□□□ -1.79
VPS39-204ENST00000561818 KRTAP4-5Q9BYR2 181 aa3.89□□□□□ -1.79
VPS39-204ENST00000561818 KRTAP17-1Q9BYP8 105 aa3.88□□□□□ -1.79
VPS39-204ENST00000561818 S4R3F8 94 aa3.88□□□□□ -1.79
VPS39-204ENST00000561818 KRTAP3-1Q9BYR8 98 aa3.84□□□□□ -1.79
VPS39-204ENST00000561818 BIRC6Q9NR09 4857 aa3.84□□□□□ -1.79
VPS39-204ENST00000561818 MIR22HGQ0VDD5 57 aa3.82□□□□□ -1.8
VPS39-204ENST00000561818 CSAG1Q6PB30 78 aa3.82□□□□□ -1.8
VPS39-204ENST00000561818 HERC2O95714 4834 aa3.81□□□□□ -1.8
VPS39-204ENST00000561818 H0YAA0 97 aa3.81□□□□□ -1.8
VPS39-204ENST00000561818 PMAIP1Q13794 54 aa3.8□□□□□ -1.8
VPS39-204ENST00000561818 SPATA8Q6RVD6 105 aa3.8□□□□□ -1.8
VPS39-204ENST00000561818 A0A0A0MQY5 61 aa3.79□□□□□ -1.8
VPS39-204ENST00000561818 A0A1B0GU33 70 aa3.79□□□□□ -1.8
VPS39-204ENST00000561818 K7ERS5 55 aa3.79□□□□□ -1.8
VPS39-204ENST00000561818 LCA10Q71F78 164 aa3.79□□□□□ -1.8
VPS39-204ENST00000561818 ABCA13Q86UQ4 5058 aa3.73□□□□□ -1.81
VPS39-204ENST00000561818 M0QZ58 72 aa3.72□□□□□ -1.81
VPS39-204ENST00000561818 KTN1-AS1Q86SY8 53 aa3.71□□□□□ -1.82
VPS39-204ENST00000561818 A6NN06 94 aa3.7□□□□□ -1.82
VPS39-204ENST00000561818 LRP2P98164 4655 aa3.66□□□□□ -1.82
VPS39-204ENST00000561818 ADM2Q7Z4H4 148 aa3.66□□□□□ -1.82
VPS39-204ENST00000561818 KRTAP10-6P60371 365 aaPredicted RBP3.65□□□□□ -1.83
VPS39-204ENST00000561818 CRIPTQ9P021 101 aa3.65□□□□□ -1.83
VPS39-204ENST00000561818 MUC17Q685J3 4493 aa3.64□□□□□ -1.83
VPS39-204ENST00000561818 A8MU10 97 aa3.64□□□□□ -1.83
VPS39-204ENST00000561818 R4GN34 69 aa3.61□□□□□ -1.83
VPS39-204ENST00000561818 PCLOQ9Y6V0 5065 aa3.61□□□□□ -1.83
VPS39-204ENST00000561818 KRTAP23-1A1A580 65 aa3.59□□□□□ -1.83
VPS39-204ENST00000561818 LPAP08519 4548 aa3.58□□□□□ -1.84
VPS39-204ENST00000561818 KRTAP4-1Q9BYQ7 146 aa3.58□□□□□ -1.84
VPS39-204ENST00000561818 P0C880 135 aa3.57□□□□□ -1.84
VPS39-204ENST00000561818 HMCN2Q8NDA2 5059 aa3.56□□□□□ -1.84
VPS39-204ENST00000561818 KRTAP19-2Q3LHN2 52 aa3.56□□□□□ -1.84
VPS39-204ENST00000561818 KRTAP5-3Q6L8H2 238 aa3.54□□□□□ -1.84
VPS39-204ENST00000561818 FLGP20930 4061 aaPredicted RBP3.53□□□□□ -1.84
VPS39-204ENST00000561818 HERC1Q15751 4861 aa3.53□□□□□ -1.84
VPS39-204ENST00000561818 ROMO1P60602 79 aa3.51□□□□□ -1.85
VPS39-204ENST00000561818 A0A0D9SG42 100 aa3.5□□□□□ -1.85
VPS39-204ENST00000561818 M0R2T5 61 aa3.5□□□□□ -1.85
VPS39-204ENST00000561818 KRTAP13-4Q3LI77 160 aa3.49□□□□□ -1.85
VPS39-204ENST00000561818 SPINT4Q6UDR6 99 aa3.47□□□□□ -1.85
VPS39-204ENST00000561818 KRTAP12-1P59990 96 aa3.46□□□□□ -1.86
VPS39-204ENST00000561818 LINC01554Q52M75 96 aa3.43□□□□□ -1.86
VPS39-204ENST00000561818 KRTAP12-2P59991 146 aa3.42□□□□□ -1.86
VPS39-204ENST00000561818 MT1HP80294 61 aa3.42□□□□□ -1.86
VPS39-204ENST00000561818 CAMK2N1Q7Z7J9 78 aa3.4□□□□□ -1.87
VPS39-204ENST00000561818 SPRR2GQ9BYE4 73 aa3.39□□□□□ -1.87
VPS39-204ENST00000561818 KRTAP25-1Q3LHN0 102 aa3.38□□□□□ -1.87
VPS39-204ENST00000561818 PLAC4Q8WY50 150 aa3.38□□□□□ -1.87
VPS39-204ENST00000561818 PRAC1Q96KF2 57 aa3.38□□□□□ -1.87
VPS39-204ENST00000561818 MUC2Q02817 5179 aa3.38□□□□□ -1.87
VPS39-204ENST00000561818 RNF213Q63HN8 5207 aa3.37□□□□□ -1.87
VPS39-204ENST00000561818 UBR4Q5T4S7 5183 aa3.36□□□□□ -1.87
VPS39-204ENST00000561818 PP632Q6XCG6 107 aa3.35□□□□□ -1.87
VPS39-204ENST00000561818 KRTAP9-8Q9BYQ0 159 aa3.35□□□□□ -1.87
VPS39-204ENST00000561818 KRTAP10-10P60014 251 aa3.34□□□□□ -1.87
VPS39-204ENST00000561818 KRTAP15-1Q3LI76 137 aa3.32□□□□□ -1.88
VPS39-204ENST00000561818 MT2AP02795 61 aa3.3□□□□□ -1.88
VPS39-204ENST00000561818 TNP1P09430 55 aa3.29□□□□□ -1.88
VPS39-204ENST00000561818 KRTAP19-8Q3LI54 63 aa3.27□□□□□ -1.89
VPS39-204ENST00000561818 MT1FP04733 61 aa3.26□□□□□ -1.89
VPS39-204ENST00000561818 PRO2289Q9P1D8 64 aa3.26□□□□□ -1.89
VPS39-204ENST00000561818 FAT4Q6V0I7 4981 aa3.25□□□□□ -1.89
VPS39-204ENST00000561818 C10orf95Q9H7T3 257 aa3.22□□□□□ -1.89
VPS39-204ENST00000561818 MT1BP07438 61 aa3.12□□□□□ -1.91
VPS39-204ENST00000561818 KRTAP10-5P60370 271 aa3.06□□□□□ -1.92
VPS39-204ENST00000561818 MT1XP80297 61 aa3.05□□□□□ -1.92
VPS39-204ENST00000561818 KRTAP10-12P60413 245 aa3.04□□□□□ -1.92
VPS39-204ENST00000561818 LUZP6Q538Z0 58 aa3.01□□□□□ -1.93
VPS39-204ENST00000561818 KRTAP8-1Q8IUC2 63 aa3.01□□□□□ -1.93
VPS39-204ENST00000561818 LCE1AQ5T7P2 110 aa2.96□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms