RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 HRES1P13985 223 aa7.18□□□□□ -1.26
LDLR-213ENST00000560502 SPINK7P58062 85 aa7.18□□□□□ -1.26
LDLR-213ENST00000560502 SSPOA2VEC9 5147 aa7.17□□□□□ -1.26
LDLR-213ENST00000560502 USH2AO75445 5202 aa7.17□□□□□ -1.26
LDLR-213ENST00000560502 KRTAP9-7A8MTY7 169 aa7.16□□□□□ -1.26
LDLR-213ENST00000560502 RPS28P62857 69 aaKnown RBP7.16□□□□□ -1.26
LDLR-213ENST00000560502 SERP1Q9Y6X1 66 aa7.16□□□□□ -1.26
LDLR-213ENST00000560502 KRTAP9-8Q9BYQ0 159 aa7.14□□□□□ -1.27
LDLR-213ENST00000560502 A8MUN3 132 aa7.13□□□□□ -1.27
LDLR-213ENST00000560502 DMAC1Q96GE9 116 aa7.13□□□□□ -1.27
LDLR-213ENST00000560502 ACYP2P14621 99 aa7.09□□□□□ -1.27
LDLR-213ENST00000560502 C4orf26Q17RF5 130 aa7.04□□□□□ -1.28
LDLR-213ENST00000560502 FCGBPQ9Y6R7 5405 aaPredicted RBP7.03□□□□□ -1.28
LDLR-213ENST00000560502 COA5Q86WW8 74 aa7.02□□□□□ -1.29
LDLR-213ENST00000560502 MT2AP02795 61 aa7.01□□□□□ -1.29
LDLR-213ENST00000560502 RBM12B-AS1Q9P1G2 102 aa6.98□□□□□ -1.29
LDLR-213ENST00000560502 SMIM26A0A096LP01 95 aa6.97□□□□□ -1.29
LDLR-213ENST00000560502 MPLKIPQ8TAP9 179 aa6.97□□□□□ -1.29
LDLR-213ENST00000560502 CHKB-CPT1BH3BT56 60 aa6.96□□□□□ -1.3
LDLR-213ENST00000560502 LCE2BO14633 110 aa6.96□□□□□ -1.3
LDLR-213ENST00000560502 MT1FP04733 61 aa6.96□□□□□ -1.3
LDLR-213ENST00000560502 KRTAP19-1Q8IUB9 90 aa6.95□□□□□ -1.3
LDLR-213ENST00000560502 KRTAP3-1Q9BYR8 98 aa6.93□□□□□ -1.3
LDLR-213ENST00000560502 KRTAP9-3Q9BYQ3 159 aa6.92□□□□□ -1.3
LDLR-213ENST00000560502 SPTSSBQ8NFR3 76 aa6.91□□□□□ -1.3
LDLR-213ENST00000560502 SYNE2Q8WXH0 6885 aaKnown RBP6.9□□□□□ -1.3
LDLR-213ENST00000560502 MACF1Q9UPN3 7388 aaKnown RBP6.9□□□□□ -1.31
LDLR-213ENST00000560502 V9GYY9 64 aa6.89□□□□□ -1.31
LDLR-213ENST00000560502 H1FX-AS1Q4G0G2 97 aa6.87□□□□□ -1.31
LDLR-213ENST00000560502 KRTAP10-10P60014 251 aa6.85□□□□□ -1.31
LDLR-213ENST00000560502 Q1T7F1 81 aa6.83□□□□□ -1.32
LDLR-213ENST00000560502 S4R3F8 94 aa6.81□□□□□ -1.32
LDLR-213ENST00000560502 KRTAP19-6Q3LI70 58 aa6.77□□□□□ -1.33
LDLR-213ENST00000560502 LINC01558Q9Y6Z2 57 aa6.77□□□□□ -1.33
LDLR-213ENST00000560502 LCA10Q71F78 164 aa6.75□□□□□ -1.33
LDLR-213ENST00000560502 PRR15LQ9BU68 103 aa6.71□□□□□ -1.34
LDLR-213ENST00000560502 KRTAP3-3Q9BYR6 98 aa6.71□□□□□ -1.34
LDLR-213ENST00000560502 SEC61GP60059 68 aa6.68□□□□□ -1.34
LDLR-213ENST00000560502 A0A1B0GU69 56 aa6.67□□□□□ -1.34
LDLR-213ENST00000560502 CSAG1Q6PB30 78 aa6.67□□□□□ -1.34
LDLR-213ENST00000560502 KRTAP6-3Q3LI67 103 aa6.62□□□□□ -1.35
LDLR-213ENST00000560502 PSPHP1O15172 72 aa6.61□□□□□ -1.35
LDLR-213ENST00000560502 H0YAA0 97 aa6.6□□□□□ -1.35
LDLR-213ENST00000560502 Q5VV11 94 aa6.6□□□□□ -1.35
LDLR-213ENST00000560502 NEBP20929 6669 aa6.56□□□□□ -1.36
LDLR-213ENST00000560502 UQCR11O14957 56 aa6.49□□□□□ -1.37
LDLR-213ENST00000560502 A6NED7 52 aa6.47□□□□□ -1.37
LDLR-213ENST00000560502 KRTAP3-2Q9BYR7 98 aa6.47□□□□□ -1.37
LDLR-213ENST00000560502 A0A1B0GU33 70 aa6.46□□□□□ -1.38
LDLR-213ENST00000560502 ADM2Q7Z4H4 148 aa6.46□□□□□ -1.38
LDLR-213ENST00000560502 CDC42SE1Q9NRR8 79 aa6.4□□□□□ -1.38
LDLR-213ENST00000560502 P0C880 135 aa6.39□□□□□ -1.39
LDLR-213ENST00000560502 MIR22HGQ0VDD5 57 aa6.38□□□□□ -1.39
LDLR-213ENST00000560502 SPATA8Q6RVD6 105 aa6.38□□□□□ -1.39
LDLR-213ENST00000560502 BRK1Q8WUW1 75 aa6.37□□□□□ -1.39
LDLR-213ENST00000560502 M0QZ58 72 aa6.36□□□□□ -1.39
LDLR-213ENST00000560502 MUC12Q9UKN1 5478 aa6.34□□□□□ -1.39
LDLR-213ENST00000560502 CRIPTQ9P021 101 aa6.33□□□□□ -1.4
LDLR-213ENST00000560502 MT1BP07438 61 aa6.32□□□□□ -1.4
LDLR-213ENST00000560502 A6NN06 94 aa6.3□□□□□ -1.4
LDLR-213ENST00000560502 PRO0628Q9UI54 55 aa6.28□□□□□ -1.4
LDLR-213ENST00000560502 R4GN34 69 aa6.28□□□□□ -1.4
LDLR-213ENST00000560502 KRTAP19-8Q3LI54 63 aa6.26□□□□□ -1.41
LDLR-213ENST00000560502 KRTAP20-1Q3LI63 56 aa6.24□□□□□ -1.41
LDLR-213ENST00000560502 KRTAP13-4Q3LI77 160 aa6.24□□□□□ -1.41
LDLR-213ENST00000560502 SPRR2GQ9BYE4 73 aa6.24□□□□□ -1.41
LDLR-213ENST00000560502 KRTAP5-9P26371 169 aa6.22□□□□□ -1.41
LDLR-213ENST00000560502 KRTAP10-5P60370 271 aa6.22□□□□□ -1.41
LDLR-213ENST00000560502 A8MU10 97 aa6.18□□□□□ -1.42
LDLR-213ENST00000560502 K7ERS5 55 aa6.18□□□□□ -1.42
LDLR-213ENST00000560502 KMT2DO14686 5537 aa6.17□□□□□ -1.42
LDLR-213ENST00000560502 MDN1Q9NU22 5596 aa6.12□□□□□ -1.43
LDLR-213ENST00000560502 A0A0D9SG42 100 aa6.12□□□□□ -1.43
LDLR-213ENST00000560502 LINC01554Q52M75 96 aa6.07□□□□□ -1.44
LDLR-213ENST00000560502 KRTAP12-1P59990 96 aa6.06□□□□□ -1.44
LDLR-213ENST00000560502 PMAIP1Q13794 54 aa6.03□□□□□ -1.44
LDLR-213ENST00000560502 KRTAP2-3P0C7H8 128 aa6.01□□□□□ -1.45
LDLR-213ENST00000560502 KRTAP12-2P59991 146 aa6.01□□□□□ -1.45
LDLR-213ENST00000560502 SPINT4Q6UDR6 99 aa6.01□□□□□ -1.45
LDLR-213ENST00000560502 KRTAP2-4Q9BYR9 128 aa6.01□□□□□ -1.45
LDLR-213ENST00000560502 PLAC4Q8WY50 150 aa5.91□□□□□ -1.46
LDLR-213ENST00000560502 SPRR2FQ96RM1 72 aa5.91□□□□□ -1.46
LDLR-213ENST00000560502 SPRR2EP22531 72 aa5.9□□□□□ -1.46
LDLR-213ENST00000560502 SPRR2BP35325 72 aa5.9□□□□□ -1.46
LDLR-213ENST00000560502 SPRR2AP35326 72 aa5.9□□□□□ -1.46
LDLR-213ENST00000560502 CAMK2N1Q7Z7J9 78 aa5.87□□□□□ -1.47
LDLR-213ENST00000560502 ROMO1P60602 79 aa5.85□□□□□ -1.47
LDLR-213ENST00000560502 MT1XP80297 61 aa5.84□□□□□ -1.47
LDLR-213ENST00000560502 KTN1-AS1Q86SY8 53 aa5.83□□□□□ -1.48
LDLR-213ENST00000560502 PRO2289Q9P1D8 64 aa5.82□□□□□ -1.48
LDLR-213ENST00000560502 LCE1AQ5T7P2 110 aa5.81□□□□□ -1.48
LDLR-213ENST00000560502 KRTAP8-1Q8IUC2 63 aa5.79□□□□□ -1.48
LDLR-213ENST00000560502 KRTAP2-2Q9BYT5 123 aa5.79□□□□□ -1.48
LDLR-213ENST00000560502 KRTAP2-1Q9BYU5 128 aa5.79□□□□□ -1.48
LDLR-213ENST00000560502 SPRR2DP22532 72 aa5.7□□□□□ -1.5
LDLR-213ENST00000560502 SVIPQ8NHG7 77 aa5.7□□□□□ -1.5
LDLR-213ENST00000560502 C10orf95Q9H7T3 257 aa5.7□□□□□ -1.5
LDLR-213ENST00000560502 KRTAP25-1Q3LHN0 102 aa5.68□□□□□ -1.5
LDLR-213ENST00000560502 KRTAP4-8A0A0G2JLE6 195 aa5.67□□□□□ -1.5
LDLR-213ENST00000560502 KRTAP4-8Q9BYQ9 185 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms