RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 SPTSSBQ8NFR3 76 aa9.28□□□□□ -0.92
SNX1-208ENST00000559844 SEC61BP60468 96 aaKnown RBP9.26□□□□□ -0.93
SNX1-208ENST00000559844 KRTAP3-1Q9BYR8 98 aa9.26□□□□□ -0.93
SNX1-208ENST00000559844 A0A1B0GU69 56 aa9.23□□□□□ -0.93
SNX1-208ENST00000559844 A6NED7 52 aa9.23□□□□□ -0.93
SNX1-208ENST00000559844 MUC17Q685J3 4493 aa9.15□□□□□ -0.94
SNX1-208ENST00000559844 CDC42SE1Q9NRR8 79 aa9.12□□□□□ -0.95
SNX1-208ENST00000559844 SEC61GP60059 68 aa9.11□□□□□ -0.95
SNX1-208ENST00000559844 RNF213Q63HN8 5207 aa9.09□□□□□ -0.95
SNX1-208ENST00000559844 LCA10Q71F78 164 aa9.09□□□□□ -0.95
SNX1-208ENST00000559844 KRTAP4-1Q9BYQ7 146 aa9.08□□□□□ -0.96
SNX1-208ENST00000559844 MUC2Q02817 5179 aa9.05□□□□□ -0.96
SNX1-208ENST00000559844 A8MU10 97 aa9.03□□□□□ -0.96
SNX1-208ENST00000559844 UQCR11O14957 56 aa9.01□□□□□ -0.97
SNX1-208ENST00000559844 S4R3F8 94 aa8.97□□□□□ -0.97
SNX1-208ENST00000559844 RBM12B-AS1Q9P1G2 102 aa8.96□□□□□ -0.98
SNX1-208ENST00000559844 H1FX-AS1Q4G0G2 97 aa8.95□□□□□ -0.98
SNX1-208ENST00000559844 SPATA8Q6RVD6 105 aa8.95□□□□□ -0.98
SNX1-208ENST00000559844 MIR22HGQ0VDD5 57 aa8.93□□□□□ -0.98
SNX1-208ENST00000559844 KRTAP3-3Q9BYR6 98 aa8.92□□□□□ -0.98
SNX1-208ENST00000559844 PMAIP1Q13794 54 aa8.87□□□□□ -0.99
SNX1-208ENST00000559844 A0A1B0GU33 70 aa8.84□□□□□ -0.99
SNX1-208ENST00000559844 KRTAP19-2Q3LHN2 52 aa8.79□□□□□ -1
SNX1-208ENST00000559844 A6NN06 94 aa8.77□□□□□ -1.01
SNX1-208ENST00000559844 FAT4Q6V0I7 4981 aa8.74□□□□□ -1.01
SNX1-208ENST00000559844 H0YAA0 97 aa8.73□□□□□ -1.01
SNX1-208ENST00000559844 LCE2CQ5TA81 110 aa8.73□□□□□ -1.01
SNX1-208ENST00000559844 CSAG1Q6PB30 78 aa8.73□□□□□ -1.01
SNX1-208ENST00000559844 KRTAP10-6P60371 365 aaPredicted RBP8.7□□□□□ -1.02
SNX1-208ENST00000559844 KRTAP3-2Q9BYR7 98 aa8.68□□□□□ -1.02
SNX1-208ENST00000559844 KTN1-AS1Q86SY8 53 aa8.61□□□□□ -1.03
SNX1-208ENST00000559844 MT1HP80294 61 aa8.6□□□□□ -1.03
SNX1-208ENST00000559844 ADM2Q7Z4H4 148 aa8.6□□□□□ -1.03
SNX1-208ENST00000559844 P0C880 135 aa8.57□□□□□ -1.04
SNX1-208ENST00000559844 LCE2AQ5TA79 106 aaPredicted RBP8.57□□□□□ -1.04
SNX1-208ENST00000559844 FLGP20930 4061 aaPredicted RBP8.56□□□□□ -1.04
SNX1-208ENST00000559844 K7ERS5 55 aa8.51□□□□□ -1.05
SNX1-208ENST00000559844 M0R2T5 61 aa8.51□□□□□ -1.05
SNX1-208ENST00000559844 KRTAP13-4Q3LI77 160 aa8.5□□□□□ -1.05
SNX1-208ENST00000559844 M0QZ58 72 aa8.44□□□□□ -1.06
SNX1-208ENST00000559844 A0A0D9SG42 100 aa8.4□□□□□ -1.06
SNX1-208ENST00000559844 LORP23490 312 aaPredicted RBP8.31□□□□□ -1.08
SNX1-208ENST00000559844 R4GN34 69 aa8.28□□□□□ -1.08
SNX1-208ENST00000559844 PRAC1Q96KF2 57 aa8.25□□□□□ -1.09
SNX1-208ENST00000559844 KRTAP12-1P59990 96 aa8.22□□□□□ -1.09
SNX1-208ENST00000559844 KRTAP12-2P59991 146 aa8.21□□□□□ -1.1
SNX1-208ENST00000559844 KRTAP9-8Q9BYQ0 159 aa8.2□□□□□ -1.1
SNX1-208ENST00000559844 SPINT4Q6UDR6 99 aa8.19□□□□□ -1.1
SNX1-208ENST00000559844 ROMO1P60602 79 aa8.18□□□□□ -1.1
SNX1-208ENST00000559844 MT2AP02795 61 aa8.15□□□□□ -1.11
SNX1-208ENST00000559844 LINC01554Q52M75 96 aa8.13□□□□□ -1.11
SNX1-208ENST00000559844 CRIPTQ9P021 101 aa8.1□□□□□ -1.11
SNX1-208ENST00000559844 MT1FP04733 61 aa8.1□□□□□ -1.11
SNX1-208ENST00000559844 KRTAP10-10P60014 251 aa8.08□□□□□ -1.12
SNX1-208ENST00000559844 KRTAP25-1Q3LHN0 102 aa8.01□□□□□ -1.13
SNX1-208ENST00000559844 LCE2DQ5TA82 110 aaPredicted RBP7.93□□□□□ -1.14
SNX1-208ENST00000559844 KRTAP9-3Q9BYQ3 159 aa7.92□□□□□ -1.14
SNX1-208ENST00000559844 KRTAP9-2Q9BYQ4 174 aa7.9□□□□□ -1.15
SNX1-208ENST00000559844 SPRR2GQ9BYE4 73 aa7.81□□□□□ -1.16
SNX1-208ENST00000559844 CAMK2N1Q7Z7J9 78 aa7.8□□□□□ -1.16
SNX1-208ENST00000559844 LCE2BO14633 110 aa7.79□□□□□ -1.16
SNX1-208ENST00000559844 KRTAP19-1Q8IUB9 90 aa7.78□□□□□ -1.16
SNX1-208ENST00000559844 C10orf95Q9H7T3 257 aa7.75□□□□□ -1.17
SNX1-208ENST00000559844 FSIP2Q5CZC0 6907 aa7.75□□□□□ -1.17
SNX1-208ENST00000559844 PLAC4Q8WY50 150 aa7.66□□□□□ -1.18
SNX1-208ENST00000559844 USH2AO75445 5202 aa7.66□□□□□ -1.18
SNX1-208ENST00000559844 KRTAP19-8Q3LI54 63 aa7.61□□□□□ -1.19
SNX1-208ENST00000559844 MT1BP07438 61 aa7.55□□□□□ -1.2
SNX1-208ENST00000559844 CRCT1Q9UGL9 99 aa7.54□□□□□ -1.2
SNX1-208ENST00000559844 SSPOA2VEC9 5147 aa7.49□□□□□ -1.21
SNX1-208ENST00000559844 TNP1P09430 55 aa7.49□□□□□ -1.21
SNX1-208ENST00000559844 PP632Q6XCG6 107 aa7.48□□□□□ -1.21
SNX1-208ENST00000559844 KRTAP9-6A0A140TA67 174 aa7.44□□□□□ -1.22
SNX1-208ENST00000559844 KRTAP19-6Q3LI70 58 aa7.4□□□□□ -1.22
SNX1-208ENST00000559844 KRTAP23-1A1A580 65 aa7.38□□□□□ -1.23
SNX1-208ENST00000559844 KRTAP10-5P60370 271 aa7.26□□□□□ -1.25
SNX1-208ENST00000559844 FCGBPQ9Y6R7 5405 aaPredicted RBP7.26□□□□□ -1.25
SNX1-208ENST00000559844 MT1XP80297 61 aa7.24□□□□□ -1.25
SNX1-208ENST00000559844 PRO2289Q9P1D8 64 aa7.2□□□□□ -1.26
SNX1-208ENST00000559844 KRTAP15-1Q3LI76 137 aa7.16□□□□□ -1.26
SNX1-208ENST00000559844 LCE3AQ5TA76 89 aa7.08□□□□□ -1.28
SNX1-208ENST00000559844 MACF1Q9UPN3 7388 aaKnown RBP7.06□□□□□ -1.28
SNX1-208ENST00000559844 KRTAP10-12P60413 245 aa7□□□□□ -1.29
SNX1-208ENST00000559844 KRTAP9-1A8MXZ3 250 aaPredicted RBP7□□□□□ -1.29
SNX1-208ENST00000559844 KRTAP10-7P60409 375 aaPredicted RBP6.97□□□□□ -1.29
SNX1-208ENST00000559844 KRTAP8-1Q8IUC2 63 aa6.96□□□□□ -1.3
SNX1-208ENST00000559844 SYNE2Q8WXH0 6885 aaKnown RBP6.92□□□□□ -1.3
SNX1-208ENST00000559844 KRTAP12-3P60328 96 aa6.79□□□□□ -1.32
SNX1-208ENST00000559844 KMT2DO14686 5537 aa6.79□□□□□ -1.32
SNX1-208ENST00000559844 KRTAP4-8A0A0G2JLE6 195 aa6.76□□□□□ -1.33
SNX1-208ENST00000559844 KRTAP9-7A8MTY7 169 aa6.76□□□□□ -1.33
SNX1-208ENST00000559844 KRTAP4-8Q9BYQ9 185 aa6.76□□□□□ -1.33
SNX1-208ENST00000559844 NDUFAF8A1L188 74 aa6.75□□□□□ -1.33
SNX1-208ENST00000559844 SPRR5A0A1B0GTR4 108 aa6.73□□□□□ -1.33
SNX1-208ENST00000559844 LUZP6Q538Z0 58 aa6.71□□□□□ -1.33
SNX1-208ENST00000559844 KRTAP6-3Q3LI67 103 aa6.69□□□□□ -1.34
SNX1-208ENST00000559844 KRTAP19-5Q3LI72 72 aa6.62□□□□□ -1.35
SNX1-208ENST00000559844 KRTAP5-9P26371 169 aa6.6□□□□□ -1.35
SNX1-208ENST00000559844 SPRR2FQ96RM1 72 aa6.57□□□□□ -1.36
SNX1-208ENST00000559844 H3BS24 57 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms