RNA–Protein interactions for RNA: ENST00000558040.5

SNX1-203, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 774 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-203ENST00000558040 KRTAP19-2Q3LHN2 52 aa8.42□□□□□ -1.06
SNX1-203ENST00000558040 MUC2Q02817 5179 aa8.41□□□□□ -1.06
SNX1-203ENST00000558040 LORP23490 312 aaPredicted RBP8.36□□□□□ -1.07
SNX1-203ENST00000558040 S4R3F8 94 aa8.34□□□□□ -1.07
SNX1-203ENST00000558040 CHKB-CPT1BH3BT56 60 aa8.29□□□□□ -1.08
SNX1-203ENST00000558040 COA5Q86WW8 74 aa8.28□□□□□ -1.08
SNX1-203ENST00000558040 LCA10Q71F78 164 aa8.26□□□□□ -1.09
SNX1-203ENST00000558040 MT1HP80294 61 aa8.22□□□□□ -1.09
SNX1-203ENST00000558040 SPTSSBQ8NFR3 76 aa8.22□□□□□ -1.09
SNX1-203ENST00000558040 SERP1Q9Y6X1 66 aa8.2□□□□□ -1.1
SNX1-203ENST00000558040 M0R2T5 61 aa8.18□□□□□ -1.1
SNX1-203ENST00000558040 CSAG1Q6PB30 78 aa8.18□□□□□ -1.1
SNX1-203ENST00000558040 FAT4Q6V0I7 4981 aa8.16□□□□□ -1.1
SNX1-203ENST00000558040 FLGP20930 4061 aaPredicted RBP8.15□□□□□ -1.11
SNX1-203ENST00000558040 RPS28P62857 69 aaKnown RBP8.05□□□□□ -1.12
SNX1-203ENST00000558040 H0YAA0 97 aa7.98□□□□□ -1.13
SNX1-203ENST00000558040 KRTAP10-6P60371 365 aaPredicted RBP7.97□□□□□ -1.13
SNX1-203ENST00000558040 SMIM26A0A096LP01 95 aa7.94□□□□□ -1.14
SNX1-203ENST00000558040 SEC61GP60059 68 aa7.93□□□□□ -1.14
SNX1-203ENST00000558040 ADM2Q7Z4H4 148 aa7.91□□□□□ -1.14
SNX1-203ENST00000558040 V9GYY9 64 aa7.89□□□□□ -1.15
SNX1-203ENST00000558040 LINC01558Q9Y6Z2 57 aa7.88□□□□□ -1.15
SNX1-203ENST00000558040 A0A1B0GU69 56 aa7.87□□□□□ -1.15
SNX1-203ENST00000558040 KRTAP9-8Q9BYQ0 159 aa7.86□□□□□ -1.15
SNX1-203ENST00000558040 PRR15LQ9BU68 103 aa7.85□□□□□ -1.15
SNX1-203ENST00000558040 MT2AP02795 61 aa7.84□□□□□ -1.15
SNX1-203ENST00000558040 Q1T7F1 81 aa7.84□□□□□ -1.15
SNX1-203ENST00000558040 KRTAP10-10P60014 251 aa7.8□□□□□ -1.16
SNX1-203ENST00000558040 P0C880 135 aa7.79□□□□□ -1.16
SNX1-203ENST00000558040 LOC100996750A0A140TA64 210 aa7.77□□□□□ -1.17
SNX1-203ENST00000558040 MT1FP04733 61 aa7.77□□□□□ -1.17
SNX1-203ENST00000558040 KRTAP4-6Q9BYQ5 205 aa7.77□□□□□ -1.17
SNX1-203ENST00000558040 CRIPTQ9P021 101 aa7.74□□□□□ -1.17
SNX1-203ENST00000558040 A0A1B0GU33 70 aa7.69□□□□□ -1.18
SNX1-203ENST00000558040 PSPHP1O15172 72 aa7.69□□□□□ -1.18
SNX1-203ENST00000558040 R4GN34 69 aa7.68□□□□□ -1.18
SNX1-203ENST00000558040 M0QZ58 72 aa7.65□□□□□ -1.18
SNX1-203ENST00000558040 Q5VV11 94 aa7.62□□□□□ -1.19
SNX1-203ENST00000558040 KRTAP9-3Q9BYQ3 159 aa7.6□□□□□ -1.19
SNX1-203ENST00000558040 UQCR11O14957 56 aa7.58□□□□□ -1.2
SNX1-203ENST00000558040 SPRR2GQ9BYE4 73 aa7.58□□□□□ -1.2
SNX1-203ENST00000558040 KRTAP13-4Q3LI77 160 aa7.54□□□□□ -1.2
SNX1-203ENST00000558040 KRTAP19-1Q8IUB9 90 aa7.54□□□□□ -1.2
SNX1-203ENST00000558040 SPATA8Q6RVD6 105 aa7.53□□□□□ -1.2
SNX1-203ENST00000558040 A6NED7 52 aa7.5□□□□□ -1.21
SNX1-203ENST00000558040 LINC01554Q52M75 96 aa7.49□□□□□ -1.21
SNX1-203ENST00000558040 MIR22HGQ0VDD5 57 aa7.46□□□□□ -1.22
SNX1-203ENST00000558040 A0A0D9SG42 100 aa7.42□□□□□ -1.22
SNX1-203ENST00000558040 KRTAP19-8Q3LI54 63 aa7.42□□□□□ -1.22
SNX1-203ENST00000558040 A6NN06 94 aa7.38□□□□□ -1.23
SNX1-203ENST00000558040 A8MU10 97 aa7.38□□□□□ -1.23
SNX1-203ENST00000558040 KRTAP9-2Q9BYQ4 174 aa7.34□□□□□ -1.23
SNX1-203ENST00000558040 PLAC4Q8WY50 150 aa7.33□□□□□ -1.24
SNX1-203ENST00000558040 CDC42SE1Q9NRR8 79 aa7.32□□□□□ -1.24
SNX1-203ENST00000558040 MT1BP07438 61 aa7.31□□□□□ -1.24
SNX1-203ENST00000558040 SPINT4Q6UDR6 99 aa7.28□□□□□ -1.24
SNX1-203ENST00000558040 KRTAP12-1P59990 96 aa7.27□□□□□ -1.25
SNX1-203ENST00000558040 K7ERS5 55 aa7.24□□□□□ -1.25
SNX1-203ENST00000558040 KRTAP12-2P59991 146 aa7.23□□□□□ -1.25
SNX1-203ENST00000558040 BRK1Q8WUW1 75 aa7.22□□□□□ -1.25
SNX1-203ENST00000558040 KRTAP4-8Q9BYQ9 185 aa7.18□□□□□ -1.26
SNX1-203ENST00000558040 CAMK2N1Q7Z7J9 78 aa7.17□□□□□ -1.26
SNX1-203ENST00000558040 USH2AO75445 5202 aa7.16□□□□□ -1.26
SNX1-203ENST00000558040 KRTAP9-6A0A140TA67 174 aa7.09□□□□□ -1.27
SNX1-203ENST00000558040 PRO2289Q9P1D8 64 aa7.08□□□□□ -1.28
SNX1-203ENST00000558040 KRTAP19-6Q3LI70 58 aa7.06□□□□□ -1.28
SNX1-203ENST00000558040 FSIP2Q5CZC0 6907 aa7.06□□□□□ -1.28
SNX1-203ENST00000558040 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.04□□□□□ -1.28
SNX1-203ENST00000558040 KRTAP10-5P60370 271 aa7.02□□□□□ -1.29
SNX1-203ENST00000558040 MT1XP80297 61 aa7.02□□□□□ -1.29
SNX1-203ENST00000558040 CRCT1Q9UGL9 99 aa6.99□□□□□ -1.29
SNX1-203ENST00000558040 SSPOA2VEC9 5147 aa6.94□□□□□ -1.3
SNX1-203ENST00000558040 PRO0628Q9UI54 55 aa6.93□□□□□ -1.3
SNX1-203ENST00000558040 KRTAP4-12Q9BQ66 201 aa6.92□□□□□ -1.3
SNX1-203ENST00000558040 C10orf95Q9H7T3 257 aa6.88□□□□□ -1.31
SNX1-203ENST00000558040 ROMO1P60602 79 aa6.84□□□□□ -1.31
SNX1-203ENST00000558040 PMAIP1Q13794 54 aa6.82□□□□□ -1.32
SNX1-203ENST00000558040 LCE3BQ5TA77 95 aa6.82□□□□□ -1.32
SNX1-203ENST00000558040 TNP1P09430 55 aa6.78□□□□□ -1.32
SNX1-203ENST00000558040 KRTAP25-1Q3LHN0 102 aa6.73□□□□□ -1.33
SNX1-203ENST00000558040 FCGBPQ9Y6R7 5405 aaPredicted RBP6.72□□□□□ -1.33
SNX1-203ENST00000558040 KRTAP10-7P60409 375 aaPredicted RBP6.71□□□□□ -1.34
SNX1-203ENST00000558040 KRTAP9-9Q9BYP9 154 aa6.7□□□□□ -1.34
SNX1-203ENST00000558040 KRTAP9-4Q9BYQ2 154 aa6.7□□□□□ -1.34
SNX1-203ENST00000558040 KRTAP10-12P60413 245 aa6.68□□□□□ -1.34
SNX1-203ENST00000558040 KRTAP4-8A0A0G2JLE6 195 aa6.56□□□□□ -1.36
SNX1-203ENST00000558040 KRTAP23-1A1A580 65 aa6.51□□□□□ -1.37
SNX1-203ENST00000558040 LCE3AQ5TA76 89 aa6.48□□□□□ -1.37
SNX1-203ENST00000558040 PP632Q6XCG6 107 aa6.47□□□□□ -1.37
SNX1-203ENST00000558040 KTN1-AS1Q86SY8 53 aa6.46□□□□□ -1.38
SNX1-203ENST00000558040 KRTAP8-1Q8IUC2 63 aa6.45□□□□□ -1.38
SNX1-203ENST00000558040 LCE1DQ5T752 114 aa6.39□□□□□ -1.39
SNX1-203ENST00000558040 KRTAP9-7A8MTY7 169 aa6.37□□□□□ -1.39
SNX1-203ENST00000558040 PRAC1Q96KF2 57 aa6.37□□□□□ -1.39
SNX1-203ENST00000558040 MACF1Q9UPN3 7388 aaKnown RBP6.37□□□□□ -1.39
SNX1-203ENST00000558040 H3BS24 57 aa6.36□□□□□ -1.39
SNX1-203ENST00000558040 KMT2DO14686 5537 aa6.35□□□□□ -1.39
SNX1-203ENST00000558040 KRTAP4-7Q9BYR0 210 aa6.32□□□□□ -1.4
SNX1-203ENST00000558040 LCE4AQ5TA78 99 aa6.3□□□□□ -1.4
SNX1-203ENST00000558040 SYNE2Q8WXH0 6885 aaKnown RBP6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 95.1 ms