RNA–Protein interactions for RNA: ENST00000557060.1

SYNE2-225, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 3,203 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-225ENST00000557060 LPAP08519 4548 aa3.15□□□□□ -1.91
SYNE2-225ENST00000557060 Q5VV11 94 aa3.14□□□□□ -1.91
SYNE2-225ENST00000557060 LRP2P98164 4655 aa3.14□□□□□ -1.91
SYNE2-225ENST00000557060 V9GYY9 64 aa3.14□□□□□ -1.91
SYNE2-225ENST00000557060 Q75L30 129 aa3.13□□□□□ -1.91
SYNE2-225ENST00000557060 SPTSSBQ8NFR3 76 aa3.12□□□□□ -1.91
SYNE2-225ENST00000557060 A0A1B0GU69 56 aa3.11□□□□□ -1.91
SYNE2-225ENST00000557060 RPL37P61927 97 aaKnown RBP3.1□□□□□ -1.91
SYNE2-225ENST00000557060 HERC2O95714 4834 aa3.1□□□□□ -1.91
SYNE2-225ENST00000557060 LINC01558Q9Y6Z2 57 aa3.1□□□□□ -1.91
SYNE2-225ENST00000557060 PRO0628Q9UI54 55 aa3.09□□□□□ -1.92
SYNE2-225ENST00000557060 MUC2Q02817 5179 aa3.08□□□□□ -1.92
SYNE2-225ENST00000557060 LCA10Q71F78 164 aa3.07□□□□□ -1.92
SYNE2-225ENST00000557060 COX6B2Q6YFQ2 88 aa3.06□□□□□ -1.92
SYNE2-225ENST00000557060 PCLOQ9Y6V0 5065 aa3.05□□□□□ -1.92
SYNE2-225ENST00000557060 SEC61GP60059 68 aa3.05□□□□□ -1.92
SYNE2-225ENST00000557060 HERC1Q15751 4861 aa3.04□□□□□ -1.92
SYNE2-225ENST00000557060 TPRXLQ17RH7 258 aa3.04□□□□□ -1.92
SYNE2-225ENST00000557060 PMAIP1Q13794 54 aa3.03□□□□□ -1.92
SYNE2-225ENST00000557060 LCE4AQ5TA78 99 aa3.02□□□□□ -1.93
SYNE2-225ENST00000557060 UQCR11O14957 56 aa3□□□□□ -1.93
SYNE2-225ENST00000557060 MIR22HGQ0VDD5 57 aa3□□□□□ -1.93
SYNE2-225ENST00000557060 SPATA8Q6RVD6 105 aa3□□□□□ -1.93
SYNE2-225ENST00000557060 CDC42SE1Q9NRR8 79 aa3□□□□□ -1.93
SYNE2-225ENST00000557060 S4R3F8 94 aa3□□□□□ -1.93
SYNE2-225ENST00000557060 BIRC6Q9NR09 4857 aa2.99□□□□□ -1.93
SYNE2-225ENST00000557060 RBM12B-AS1Q9P1G2 102 aa2.98□□□□□ -1.93
SYNE2-225ENST00000557060 A0A1B0GU33 70 aa2.97□□□□□ -1.93
SYNE2-225ENST00000557060 A0A0D9SG42 100 aa2.96□□□□□ -1.94
SYNE2-225ENST00000557060 SEC61BP60468 96 aaKnown RBP2.96□□□□□ -1.94
SYNE2-225ENST00000557060 H1FX-AS1Q4G0G2 97 aa2.96□□□□□ -1.94
SYNE2-225ENST00000557060 KRTAP4-1Q9BYQ7 146 aa2.96□□□□□ -1.94
SYNE2-225ENST00000557060 RNF213Q63HN8 5207 aa2.95□□□□□ -1.94
SYNE2-225ENST00000557060 H0YAA0 97 aa2.94□□□□□ -1.94
SYNE2-225ENST00000557060 KRTAP19-1Q8IUB9 90 aa2.94□□□□□ -1.94
SYNE2-225ENST00000557060 P0C880 135 aa2.94□□□□□ -1.94
SYNE2-225ENST00000557060 KRTAP9-6A0A140TA67 174 aa2.93□□□□□ -1.94
SYNE2-225ENST00000557060 KRTAP9-7A8MTY7 169 aa2.93□□□□□ -1.94
SYNE2-225ENST00000557060 ADM2Q7Z4H4 148 aa2.93□□□□□ -1.94
SYNE2-225ENST00000557060 FAT4Q6V0I7 4981 aa2.91□□□□□ -1.94
SYNE2-225ENST00000557060 CSAG1Q6PB30 78 aa2.91□□□□□ -1.94
SYNE2-225ENST00000557060 KRTAP15-1Q3LI76 137 aa2.91□□□□□ -1.94
SYNE2-225ENST00000557060 UBR4Q5T4S7 5183 aa2.91□□□□□ -1.94
SYNE2-225ENST00000557060 LINC01554Q52M75 96 aa2.9□□□□□ -1.94
SYNE2-225ENST00000557060 KRTAP10-6P60371 365 aaPredicted RBP2.9□□□□□ -1.95
SYNE2-225ENST00000557060 A6NN06 94 aa2.89□□□□□ -1.95
SYNE2-225ENST00000557060 KRTAP13-4Q3LI77 160 aa2.89□□□□□ -1.95
SYNE2-225ENST00000557060 KRTAP19-4Q3LI73 84 aa2.88□□□□□ -1.95
SYNE2-225ENST00000557060 PRAC1Q96KF2 57 aa2.88□□□□□ -1.95
SYNE2-225ENST00000557060 KRTAP9-9Q9BYP9 154 aa2.86□□□□□ -1.95
SYNE2-225ENST00000557060 KRTAP9-4Q9BYQ2 154 aa2.86□□□□□ -1.95
SYNE2-225ENST00000557060 CRIPTQ9P021 101 aa2.86□□□□□ -1.95
SYNE2-225ENST00000557060 SPINT4Q6UDR6 99 aa2.85□□□□□ -1.95
SYNE2-225ENST00000557060 HMCN2Q8NDA2 5059 aa2.85□□□□□ -1.95
SYNE2-225ENST00000557060 KTN1-AS1Q86SY8 53 aa2.85□□□□□ -1.95
SYNE2-225ENST00000557060 MUC17Q685J3 4493 aa2.84□□□□□ -1.95
SYNE2-225ENST00000557060 K7ERS5 55 aa2.83□□□□□ -1.96
SYNE2-225ENST00000557060 M0QZ58 72 aa2.83□□□□□ -1.96
SYNE2-225ENST00000557060 KRTAP4-12Q9BQ66 201 aa2.82□□□□□ -1.96
SYNE2-225ENST00000557060 R4GN34 69 aa2.82□□□□□ -1.96
SYNE2-225ENST00000557060 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.82□□□□□ -1.96
SYNE2-225ENST00000557060 M0R2T5 61 aa2.81□□□□□ -1.96
SYNE2-225ENST00000557060 KRTAP9-2Q9BYQ4 174 aa2.81□□□□□ -1.96
SYNE2-225ENST00000557060 KRTAP4-8Q9BYQ9 185 aa2.8□□□□□ -1.96
SYNE2-225ENST00000557060 KRTAP12-2P59991 146 aa2.79□□□□□ -1.96
SYNE2-225ENST00000557060 KRTAP19-2Q3LHN2 52 aa2.79□□□□□ -1.96
SYNE2-225ENST00000557060 KRTAP12-1P59990 96 aa2.74□□□□□ -1.97
SYNE2-225ENST00000557060 KRTAP9-8Q9BYQ0 159 aa2.73□□□□□ -1.97
SYNE2-225ENST00000557060 KRTAP9-3Q9BYQ3 159 aa2.73□□□□□ -1.97
SYNE2-225ENST00000557060 LCE3BQ5TA77 95 aa2.72□□□□□ -1.97
SYNE2-225ENST00000557060 C10orf95Q9H7T3 257 aa2.72□□□□□ -1.97
SYNE2-225ENST00000557060 ROMO1P60602 79 aa2.71□□□□□ -1.98
SYNE2-225ENST00000557060 FLGP20930 4061 aaPredicted RBP2.71□□□□□ -1.98
SYNE2-225ENST00000557060 CAMK2N1Q7Z7J9 78 aa2.69□□□□□ -1.98
SYNE2-225ENST00000557060 MT1HP80294 61 aa2.68□□□□□ -1.98
SYNE2-225ENST00000557060 KRTAP10-10P60014 251 aa2.67□□□□□ -1.98
SYNE2-225ENST00000557060 KRTAP25-1Q3LHN0 102 aa2.66□□□□□ -1.98
SYNE2-225ENST00000557060 KRTAP4-8A0A0G2JLE6 195 aa2.64□□□□□ -1.99
SYNE2-225ENST00000557060 FSIP2Q5CZC0 6907 aa2.63□□□□□ -1.99
SYNE2-225ENST00000557060 LCE5AQ5TCM9 118 aa2.63□□□□□ -1.99
SYNE2-225ENST00000557060 MT1FP04733 61 aa2.62□□□□□ -1.99
SYNE2-225ENST00000557060 MT2AP02795 61 aa2.61□□□□□ -1.99
SYNE2-225ENST00000557060 KRTAP5-3Q6L8H2 238 aa2.61□□□□□ -1.99
SYNE2-225ENST00000557060 USH2AO75445 5202 aa2.59□□□□□ -1.99
SYNE2-225ENST00000557060 PLAC4Q8WY50 150 aa2.57□□□□□ -2
SYNE2-225ENST00000557060 KRTAP4-7Q9BYR0 210 aa2.56□□□□□ -2
SYNE2-225ENST00000557060 SPRR2GQ9BYE4 73 aa2.54□□□□□ -2
SYNE2-225ENST00000557060 LCE1DQ5T752 114 aa2.51□□□□□ -2.01
SYNE2-225ENST00000557060 TNP1P09430 55 aa2.49□□□□□ -2.01
SYNE2-225ENST00000557060 KRTAP4-2Q9BYR5 136 aa2.47□□□□□ -2.01
SYNE2-225ENST00000557060 MT1BP07438 61 aa2.46□□□□□ -2.02
SYNE2-225ENST00000557060 KMT2DO14686 5537 aa2.43□□□□□ -2.02
SYNE2-225ENST00000557060 KRTAP19-8Q3LI54 63 aa2.42□□□□□ -2.02
SYNE2-225ENST00000557060 KRTAP4-9Q9BYQ8 210 aa2.42□□□□□ -2.02
SYNE2-225ENST00000557060 KRTAP10-5P60370 271 aa2.42□□□□□ -2.02
SYNE2-225ENST00000557060 MT1XP80297 61 aa2.42□□□□□ -2.02
SYNE2-225ENST00000557060 LCE3AQ5TA76 89 aa2.4□□□□□ -2.02
SYNE2-225ENST00000557060 PP632Q6XCG6 107 aa2.39□□□□□ -2.03
SYNE2-225ENST00000557060 KRTAP10-7P60409 375 aaPredicted RBP2.38□□□□□ -2.03
SYNE2-225ENST00000557060 KRTAP4-11Q9BYQ6 195 aa2.38□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms