RNA–Protein interactions for RNA: ENST00000549678.1

PTCH1-219, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 578 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-219ENST00000549678 MT-ATP8P03928 68 aa3.47□□□□□ -1.85
PTCH1-219ENST00000549678 LINC00208Q96KT6 92 aa3.47□□□□□ -1.85
PTCH1-219ENST00000549678 CSAG1Q6PB30 78 aa3.46□□□□□ -1.86
PTCH1-219ENST00000549678 LCA10Q71F78 164 aa3.44□□□□□ -1.86
PTCH1-219ENST00000549678 KRTAP19-1Q8IUB9 90 aa3.44□□□□□ -1.86
PTCH1-219ENST00000549678 KRTAP3-1Q9BYR8 98 aa3.43□□□□□ -1.86
PTCH1-219ENST00000549678 OCR1Q9BZK8 76 aa3.43□□□□□ -1.86
PTCH1-219ENST00000549678 H3BPC8 53 aa3.41□□□□□ -1.86
PTCH1-219ENST00000549678 IMUPQ9GZP8 106 aa3.41□□□□□ -1.86
PTCH1-219ENST00000549678 A8MUN3 132 aa3.4□□□□□ -1.87
PTCH1-219ENST00000549678 NDUFC1O43677 76 aa3.4□□□□□ -1.87
PTCH1-219ENST00000549678 KRTAP19-6Q3LI70 58 aa3.4□□□□□ -1.87
PTCH1-219ENST00000549678 KLKP1Q107X0 134 aa3.39□□□□□ -1.87
PTCH1-219ENST00000549678 SMIM20Q8N5G0 67 aa3.38□□□□□ -1.87
PTCH1-219ENST00000549678 TRAV7A0A075B6U4 112 aa3.35□□□□□ -1.87
PTCH1-219ENST00000549678 ANAPC13Q9BS18 74 aa3.35□□□□□ -1.87
PTCH1-219ENST00000549678 NEBP20929 6669 aa3.34□□□□□ -1.87
PTCH1-219ENST00000549678 KRTAP3-3Q9BYR6 98 aa3.33□□□□□ -1.88
PTCH1-219ENST00000549678 PCP4P48539 62 aa3.32□□□□□ -1.88
PTCH1-219ENST00000549678 DMAC1Q96GE9 116 aa3.31□□□□□ -1.88
PTCH1-219ENST00000549678 SNURFQ9Y675 71 aa3.3□□□□□ -1.88
PTCH1-219ENST00000549678 CHKB-CPT1BH3BT56 60 aa3.29□□□□□ -1.88
PTCH1-219ENST00000549678 ACYP2P14621 99 aa3.29□□□□□ -1.88
PTCH1-219ENST00000549678 KRTAP6-3Q3LI67 103 aa3.29□□□□□ -1.88
PTCH1-219ENST00000549678 Q5VV11 94 aa3.29□□□□□ -1.88
PTCH1-219ENST00000549678 ADM2Q7Z4H4 148 aa3.29□□□□□ -1.88
PTCH1-219ENST00000549678 KRTAP3-2Q9BYR7 98 aa3.29□□□□□ -1.88
PTCH1-219ENST00000549678 CRIPTQ9P021 101 aa3.29□□□□□ -1.88
PTCH1-219ENST00000549678 SPTSSBQ8NFR3 76 aa3.28□□□□□ -1.88
PTCH1-219ENST00000549678 H0YAA0 97 aa3.27□□□□□ -1.89
PTCH1-219ENST00000549678 C20orf197Q8N268 126 aa3.27□□□□□ -1.89
PTCH1-219ENST00000549678 SERP2Q8N6R1 65 aa3.27□□□□□ -1.89
PTCH1-219ENST00000549678 MUC12Q9UKN1 5478 aa3.26□□□□□ -1.89
PTCH1-219ENST00000549678 CCDC179H3BU77 68 aa3.25□□□□□ -1.89
PTCH1-219ENST00000549678 COX7CP15954 63 aa3.25□□□□□ -1.89
PTCH1-219ENST00000549678 SPRR2GQ9BYE4 73 aa3.25□□□□□ -1.89
PTCH1-219ENST00000549678 KRTAP4-8Q9BYQ9 185 aa3.24□□□□□ -1.89
PTCH1-219ENST00000549678 R4GN34 69 aa3.23□□□□□ -1.89
PTCH1-219ENST00000549678 A6NN06 94 aa3.22□□□□□ -1.89
PTCH1-219ENST00000549678 M0QZ58 72 aa3.21□□□□□ -1.9
PTCH1-219ENST00000549678 KRTAP19-8Q3LI54 63 aa3.21□□□□□ -1.9
PTCH1-219ENST00000549678 SPANXA2-OT1Q8N9U9 137 aa3.21□□□□□ -1.9
PTCH1-219ENST00000549678 MT1BP07438 61 aa3.2□□□□□ -1.9
PTCH1-219ENST00000549678 P0C880 135 aa3.19□□□□□ -1.9
PTCH1-219ENST00000549678 LINC01554Q52M75 96 aa3.18□□□□□ -1.9
PTCH1-219ENST00000549678 PLAC4Q8WY50 150 aa3.18□□□□□ -1.9
PTCH1-219ENST00000549678 CYSTM1Q9H1C7 97 aa3.18□□□□□ -1.9
PTCH1-219ENST00000549678 MDN1Q9NU22 5596 aa3.18□□□□□ -1.9
PTCH1-219ENST00000549678 KRTAP10-5P60370 271 aa3.16□□□□□ -1.9
PTCH1-219ENST00000549678 KMT2DO14686 5537 aa3.15□□□□□ -1.9
PTCH1-219ENST00000549678 COA5Q86WW8 74 aa3.14□□□□□ -1.91
PTCH1-219ENST00000549678 H7BZZ5 65 aa3.13□□□□□ -1.91
PTCH1-219ENST00000549678 SEC61GP60059 68 aa3.13□□□□□ -1.91
PTCH1-219ENST00000549678 TMEM258P61165 79 aa3.13□□□□□ -1.91
PTCH1-219ENST00000549678 PRO2289Q9P1D8 64 aa3.13□□□□□ -1.91
PTCH1-219ENST00000549678 KRTAP5-9P26371 169 aa3.11□□□□□ -1.91
PTCH1-219ENST00000549678 SERP1Q9Y6X1 66 aa3.11□□□□□ -1.91
PTCH1-219ENST00000549678 ATP5EP56381 51 aaPredicted RBP3.1□□□□□ -1.91
PTCH1-219ENST00000549678 KRTAP4-8A0A0G2JLE6 195 aa3.09□□□□□ -1.91
PTCH1-219ENST00000549678 KRTAP5-3Q6L8H2 238 aa3.08□□□□□ -1.92
PTCH1-219ENST00000549678 KRTAP20-1Q3LI63 56 aa3.06□□□□□ -1.92
PTCH1-219ENST00000549678 KRTAP9-9Q9BYP9 154 aa3.04□□□□□ -1.92
PTCH1-219ENST00000549678 KRTAP9-4Q9BYQ2 154 aa3.04□□□□□ -1.92
PTCH1-219ENST00000549678 LCE3BQ5TA77 95 aa3.03□□□□□ -1.92
PTCH1-219ENST00000549678 KRTAP4-7Q9BYR0 210 aa3.03□□□□□ -1.92
PTCH1-219ENST00000549678 A0A1B0GU69 56 aa3.02□□□□□ -1.93
PTCH1-219ENST00000549678 MT1XP80297 61 aa3.02□□□□□ -1.93
PTCH1-219ENST00000549678 CAMK2N1Q7Z7J9 78 aa3.01□□□□□ -1.93
PTCH1-219ENST00000549678 A0A0D9SG42 100 aa3□□□□□ -1.93
PTCH1-219ENST00000549678 A0A1B0GU33 70 aa3□□□□□ -1.93
PTCH1-219ENST00000549678 KRTAP2-3P0C7H8 128 aa2.98□□□□□ -1.93
PTCH1-219ENST00000549678 KRTAP13-4Q3LI77 160 aa2.98□□□□□ -1.93
PTCH1-219ENST00000549678 SPATA8Q6RVD6 105 aa2.98□□□□□ -1.93
PTCH1-219ENST00000549678 PRR15LQ9BU68 103 aa2.98□□□□□ -1.93
PTCH1-219ENST00000549678 KRTAP2-4Q9BYR9 128 aa2.98□□□□□ -1.93
PTCH1-219ENST00000549678 KRTAP12-2P59991 146 aa2.97□□□□□ -1.93
PTCH1-219ENST00000549678 SPINT4Q6UDR6 99 aa2.97□□□□□ -1.93
PTCH1-219ENST00000549678 SPRR2FQ96RM1 72 aa2.97□□□□□ -1.93
PTCH1-219ENST00000549678 KRTAP8-1Q8IUC2 63 aa2.96□□□□□ -1.94
PTCH1-219ENST00000549678 RPS28P62857 69 aaKnown RBP2.95□□□□□ -1.94
PTCH1-219ENST00000549678 SMIM26A0A096LP01 95 aa2.94□□□□□ -1.94
PTCH1-219ENST00000549678 SPRR2EP22531 72 aa2.94□□□□□ -1.94
PTCH1-219ENST00000549678 SPRR2BP35325 72 aa2.94□□□□□ -1.94
PTCH1-219ENST00000549678 SPRR2AP35326 72 aa2.94□□□□□ -1.94
PTCH1-219ENST00000549678 KRTAP4-2Q9BYR5 136 aa2.93□□□□□ -1.94
PTCH1-219ENST00000549678 KRTAP10-7P60409 375 aaPredicted RBP2.9□□□□□ -1.95
PTCH1-219ENST00000549678 LCE1AQ5T7P2 110 aa2.9□□□□□ -1.95
PTCH1-219ENST00000549678 PSPHP1O15172 72 aa2.88□□□□□ -1.95
PTCH1-219ENST00000549678 KRTAP2-2Q9BYT5 123 aa2.88□□□□□ -1.95
PTCH1-219ENST00000549678 KRTAP2-1Q9BYU5 128 aa2.88□□□□□ -1.95
PTCH1-219ENST00000549678 LINC01558Q9Y6Z2 57 aa2.88□□□□□ -1.95
PTCH1-219ENST00000549678 V9GYY9 64 aa2.88□□□□□ -1.95
PTCH1-219ENST00000549678 A8MU10 97 aa2.87□□□□□ -1.95
PTCH1-219ENST00000549678 KRTAP12-1P59990 96 aa2.87□□□□□ -1.95
PTCH1-219ENST00000549678 KRTAP10-12P60413 245 aa2.87□□□□□ -1.95
PTCH1-219ENST00000549678 Q1T7F1 81 aa2.86□□□□□ -1.95
PTCH1-219ENST00000549678 UQCR11O14957 56 aa2.85□□□□□ -1.95
PTCH1-219ENST00000549678 SPRR2DP22532 72 aa2.85□□□□□ -1.95
PTCH1-219ENST00000549678 KRTAP4-12Q9BQ66 201 aa2.84□□□□□ -1.95
PTCH1-219ENST00000549678 KRTAP4-9Q9BYQ8 210 aa2.83□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms