RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 ACYP2P14621 99 aa7.92□□□□□ -1.14
PRPF40A-212ENST00000545856 PCP4P48539 62 aa7.91□□□□□ -1.14
PRPF40A-212ENST00000545856 CYSTM1Q9H1C7 97 aa7.91□□□□□ -1.14
PRPF40A-212ENST00000545856 TMEM258P61165 79 aa7.89□□□□□ -1.15
PRPF40A-212ENST00000545856 S4R3F8 94 aa7.87□□□□□ -1.15
PRPF40A-212ENST00000545856 MT1HP80294 61 aa7.86□□□□□ -1.15
PRPF40A-212ENST00000545856 LCA10Q71F78 164 aa7.79□□□□□ -1.16
PRPF40A-212ENST00000545856 M0R2T5 61 aa7.78□□□□□ -1.16
PRPF40A-212ENST00000545856 CSAG1Q6PB30 78 aa7.78□□□□□ -1.16
PRPF40A-212ENST00000545856 SPTSSBQ8NFR3 76 aa7.78□□□□□ -1.16
PRPF40A-212ENST00000545856 CHKB-CPT1BH3BT56 60 aa7.75□□□□□ -1.17
PRPF40A-212ENST00000545856 COA5Q86WW8 74 aa7.71□□□□□ -1.17
PRPF40A-212ENST00000545856 LORP23490 312 aaPredicted RBP7.67□□□□□ -1.18
PRPF40A-212ENST00000545856 H0YAA0 97 aa7.64□□□□□ -1.19
PRPF40A-212ENST00000545856 KRTAP10-6P60371 365 aaPredicted RBP7.63□□□□□ -1.19
PRPF40A-212ENST00000545856 SERP1Q9Y6X1 66 aa7.61□□□□□ -1.19
PRPF40A-212ENST00000545856 KRTAP9-8Q9BYQ0 159 aa7.53□□□□□ -1.2
PRPF40A-212ENST00000545856 RPS28P62857 69 aaKnown RBP7.5□□□□□ -1.21
PRPF40A-212ENST00000545856 MT2AP02795 61 aa7.47□□□□□ -1.21
PRPF40A-212ENST00000545856 CRIPTQ9P021 101 aa7.46□□□□□ -1.22
PRPF40A-212ENST00000545856 SEC61GP60059 68 aa7.45□□□□□ -1.22
PRPF40A-212ENST00000545856 ADM2Q7Z4H4 148 aa7.43□□□□□ -1.22
PRPF40A-212ENST00000545856 KRTAP10-10P60014 251 aa7.41□□□□□ -1.22
PRPF40A-212ENST00000545856 MT1FP04733 61 aa7.4□□□□□ -1.22
PRPF40A-212ENST00000545856 V9GYY9 64 aa7.4□□□□□ -1.22
PRPF40A-212ENST00000545856 SMIM26A0A096LP01 95 aa7.38□□□□□ -1.23
PRPF40A-212ENST00000545856 PRR15LQ9BU68 103 aa7.37□□□□□ -1.23
PRPF40A-212ENST00000545856 LINC01558Q9Y6Z2 57 aa7.37□□□□□ -1.23
PRPF40A-212ENST00000545856 A0A1B0GU69 56 aa7.34□□□□□ -1.23
PRPF40A-212ENST00000545856 Q1T7F1 81 aa7.32□□□□□ -1.24
PRPF40A-212ENST00000545856 P0C880 135 aa7.31□□□□□ -1.24
PRPF40A-212ENST00000545856 M0QZ58 72 aa7.28□□□□□ -1.24
PRPF40A-212ENST00000545856 KRTAP9-3Q9BYQ3 159 aa7.28□□□□□ -1.24
PRPF40A-212ENST00000545856 SPRR2GQ9BYE4 73 aa7.27□□□□□ -1.25
PRPF40A-212ENST00000545856 R4GN34 69 aa7.26□□□□□ -1.25
PRPF40A-212ENST00000545856 A0A1B0GU33 70 aa7.2□□□□□ -1.26
PRPF40A-212ENST00000545856 Q5VV11 94 aa7.2□□□□□ -1.26
PRPF40A-212ENST00000545856 KRTAP19-1Q8IUB9 90 aa7.19□□□□□ -1.26
PRPF40A-212ENST00000545856 LOC100996750A0A140TA64 210 aa7.15□□□□□ -1.26
PRPF40A-212ENST00000545856 KRTAP4-6Q9BYQ5 205 aa7.15□□□□□ -1.26
PRPF40A-212ENST00000545856 UQCR11O14957 56 aa7.11□□□□□ -1.27
PRPF40A-212ENST00000545856 KRTAP19-8Q3LI54 63 aa7.11□□□□□ -1.27
PRPF40A-212ENST00000545856 A6NN06 94 aa7.08□□□□□ -1.28
PRPF40A-212ENST00000545856 USH2AO75445 5202 aa7.07□□□□□ -1.28
PRPF40A-212ENST00000545856 PSPHP1O15172 72 aa7.07□□□□□ -1.28
PRPF40A-212ENST00000545856 KRTAP9-2Q9BYQ4 174 aa7.05□□□□□ -1.28
PRPF40A-212ENST00000545856 KRTAP13-4Q3LI77 160 aa7.04□□□□□ -1.28
PRPF40A-212ENST00000545856 LINC01554Q52M75 96 aa6.99□□□□□ -1.29
PRPF40A-212ENST00000545856 SPATA8Q6RVD6 105 aa6.98□□□□□ -1.29
PRPF40A-212ENST00000545856 MT1BP07438 61 aa6.95□□□□□ -1.3
PRPF40A-212ENST00000545856 PLAC4Q8WY50 150 aa6.95□□□□□ -1.3
PRPF40A-212ENST00000545856 MIR22HGQ0VDD5 57 aa6.95□□□□□ -1.3
PRPF40A-212ENST00000545856 A6NED7 52 aa6.94□□□□□ -1.3
PRPF40A-212ENST00000545856 SSPOA2VEC9 5147 aa6.88□□□□□ -1.31
PRPF40A-212ENST00000545856 A0A0D9SG42 100 aa6.88□□□□□ -1.31
PRPF40A-212ENST00000545856 A8MU10 97 aa6.83□□□□□ -1.32
PRPF40A-212ENST00000545856 KRTAP19-6Q3LI70 58 aa6.83□□□□□ -1.32
PRPF40A-212ENST00000545856 KRTAP9-6A0A140TA67 174 aa6.82□□□□□ -1.32
PRPF40A-212ENST00000545856 KRTAP12-1P59990 96 aa6.82□□□□□ -1.32
PRPF40A-212ENST00000545856 CDC42SE1Q9NRR8 79 aa6.82□□□□□ -1.32
PRPF40A-212ENST00000545856 FSIP2Q5CZC0 6907 aa6.8□□□□□ -1.32
PRPF40A-212ENST00000545856 K7ERS5 55 aa6.8□□□□□ -1.32
PRPF40A-212ENST00000545856 PRO2289Q9P1D8 64 aa6.8□□□□□ -1.32
PRPF40A-212ENST00000545856 SPINT4Q6UDR6 99 aa6.79□□□□□ -1.32
PRPF40A-212ENST00000545856 CRCT1Q9UGL9 99 aa6.78□□□□□ -1.32
PRPF40A-212ENST00000545856 CAMK2N1Q7Z7J9 78 aa6.76□□□□□ -1.33
PRPF40A-212ENST00000545856 KRTAP12-2P59991 146 aa6.75□□□□□ -1.33
PRPF40A-212ENST00000545856 KRTAP10-5P60370 271 aa6.73□□□□□ -1.33
PRPF40A-212ENST00000545856 MT1XP80297 61 aa6.67□□□□□ -1.34
PRPF40A-212ENST00000545856 FCGBPQ9Y6R7 5405 aaPredicted RBP6.62□□□□□ -1.35
PRPF40A-212ENST00000545856 KRTAP4-8Q9BYQ9 185 aa6.61□□□□□ -1.35
PRPF40A-212ENST00000545856 BRK1Q8WUW1 75 aa6.59□□□□□ -1.35
PRPF40A-212ENST00000545856 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.46□□□□□ -1.37
PRPF40A-212ENST00000545856 C10orf95Q9H7T3 257 aa6.44□□□□□ -1.38
PRPF40A-212ENST00000545856 TNP1P09430 55 aa6.42□□□□□ -1.38
PRPF40A-212ENST00000545856 KRTAP10-12P60413 245 aa6.4□□□□□ -1.39
PRPF40A-212ENST00000545856 ROMO1P60602 79 aa6.38□□□□□ -1.39
PRPF40A-212ENST00000545856 KRTAP25-1Q3LHN0 102 aa6.38□□□□□ -1.39
PRPF40A-212ENST00000545856 LCE3BQ5TA77 95 aa6.38□□□□□ -1.39
PRPF40A-212ENST00000545856 PRO0628Q9UI54 55 aa6.38□□□□□ -1.39
PRPF40A-212ENST00000545856 KRTAP4-12Q9BQ66 201 aa6.35□□□□□ -1.39
PRPF40A-212ENST00000545856 KRTAP10-7P60409 375 aaPredicted RBP6.33□□□□□ -1.4
PRPF40A-212ENST00000545856 MACF1Q9UPN3 7388 aaKnown RBP6.28□□□□□ -1.4
PRPF40A-212ENST00000545856 PMAIP1Q13794 54 aa6.26□□□□□ -1.41
PRPF40A-212ENST00000545856 KRTAP23-1A1A580 65 aa6.24□□□□□ -1.41
PRPF40A-212ENST00000545856 KMT2DO14686 5537 aa6.18□□□□□ -1.42
PRPF40A-212ENST00000545856 KRTAP8-1Q8IUC2 63 aa6.17□□□□□ -1.42
PRPF40A-212ENST00000545856 KRTAP9-9Q9BYP9 154 aa6.16□□□□□ -1.42
PRPF40A-212ENST00000545856 KRTAP9-4Q9BYQ2 154 aa6.16□□□□□ -1.42
PRPF40A-212ENST00000545856 PP632Q6XCG6 107 aa6.15□□□□□ -1.43
PRPF40A-212ENST00000545856 KRTAP4-8A0A0G2JLE6 195 aa6.12□□□□□ -1.43
PRPF40A-212ENST00000545856 KRTAP6-3Q3LI67 103 aa6.12□□□□□ -1.43
PRPF40A-212ENST00000545856 KRTAP9-7A8MTY7 169 aa6.11□□□□□ -1.43
PRPF40A-212ENST00000545856 H3BS24 57 aa6.09□□□□□ -1.43
PRPF40A-212ENST00000545856 KRTAP5-9P26371 169 aa6.09□□□□□ -1.43
PRPF40A-212ENST00000545856 SYNE2Q8WXH0 6885 aaKnown RBP6.09□□□□□ -1.43
PRPF40A-212ENST00000545856 LCE3AQ5TA76 89 aa6.08□□□□□ -1.44
PRPF40A-212ENST00000545856 KRTAP19-4Q3LI73 84 aa5.98□□□□□ -1.45
PRPF40A-212ENST00000545856 SPRR2FQ96RM1 72 aa5.97□□□□□ -1.45
PRPF40A-212ENST00000545856 KRTAP19-7Q3SYF9 63 aa5.96□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms