RNA–Protein interactions for RNA: ENST00000533145.5

HIF3A-215, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 4

Gene HIF3A, Length 573 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-215ENST00000533145 CRCT1Q9UGL9 99 aa6.93□□□□□ -1.3
HIF3A-215ENST00000533145 MT1HP80294 61 aa6.91□□□□□ -1.3
HIF3A-215ENST00000533145 FLGP20930 4061 aaPredicted RBP6.9□□□□□ -1.3
HIF3A-215ENST00000533145 TMEM258P61165 79 aa6.89□□□□□ -1.31
HIF3A-215ENST00000533145 ATP5EP56381 51 aaPredicted RBP6.88□□□□□ -1.31
HIF3A-215ENST00000533145 S4R3F8 94 aa6.88□□□□□ -1.31
HIF3A-215ENST00000533145 LCA10Q71F78 164 aa6.85□□□□□ -1.31
HIF3A-215ENST00000533145 KRTAP3-3Q9BYR6 98 aa6.84□□□□□ -1.31
HIF3A-215ENST00000533145 LCE2DQ5TA82 110 aaPredicted RBP6.83□□□□□ -1.32
HIF3A-215ENST00000533145 M0R2T5 61 aa6.78□□□□□ -1.32
HIF3A-215ENST00000533145 CSAG1Q6PB30 78 aa6.78□□□□□ -1.32
HIF3A-215ENST00000533145 COA5Q86WW8 74 aa6.78□□□□□ -1.32
HIF3A-215ENST00000533145 CHKB-CPT1BH3BT56 60 aa6.75□□□□□ -1.33
HIF3A-215ENST00000533145 SPTSSBQ8NFR3 76 aa6.73□□□□□ -1.33
HIF3A-215ENST00000533145 KRTAP10-6P60371 365 aaPredicted RBP6.7□□□□□ -1.34
HIF3A-215ENST00000533145 LORP23490 312 aaPredicted RBP6.69□□□□□ -1.34
HIF3A-215ENST00000533145 SERP1Q9Y6X1 66 aa6.68□□□□□ -1.34
HIF3A-215ENST00000533145 H0YAA0 97 aa6.65□□□□□ -1.34
HIF3A-215ENST00000533145 KRTAP9-8Q9BYQ0 159 aa6.65□□□□□ -1.34
HIF3A-215ENST00000533145 RPS28P62857 69 aaKnown RBP6.6□□□□□ -1.35
HIF3A-215ENST00000533145 MT2AP02795 61 aa6.58□□□□□ -1.36
HIF3A-215ENST00000533145 KRTAP9-7A8MTY7 169 aa6.55□□□□□ -1.36
HIF3A-215ENST00000533145 ADM2Q7Z4H4 148 aa6.53□□□□□ -1.36
HIF3A-215ENST00000533145 KRTAP3-2Q9BYR7 98 aa6.53□□□□□ -1.36
HIF3A-215ENST00000533145 MT1FP04733 61 aa6.52□□□□□ -1.37
HIF3A-215ENST00000533145 KRTAP10-10P60014 251 aa6.5□□□□□ -1.37
HIF3A-215ENST00000533145 LINC01558Q9Y6Z2 57 aa6.49□□□□□ -1.37
HIF3A-215ENST00000533145 SMIM26A0A096LP01 95 aa6.47□□□□□ -1.37
HIF3A-215ENST00000533145 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.47□□□□□ -1.37
HIF3A-215ENST00000533145 SEC61GP60059 68 aa6.47□□□□□ -1.37
HIF3A-215ENST00000533145 P0C880 135 aa6.46□□□□□ -1.38
HIF3A-215ENST00000533145 CRIPTQ9P021 101 aa6.44□□□□□ -1.38
HIF3A-215ENST00000533145 Q1T7F1 81 aa6.43□□□□□ -1.38
HIF3A-215ENST00000533145 V9GYY9 64 aa6.43□□□□□ -1.38
HIF3A-215ENST00000533145 A0A1B0GU69 56 aa6.42□□□□□ -1.38
HIF3A-215ENST00000533145 KRTAP9-3Q9BYQ3 159 aa6.42□□□□□ -1.38
HIF3A-215ENST00000533145 PRR15LQ9BU68 103 aa6.38□□□□□ -1.39
HIF3A-215ENST00000533145 SPRR2GQ9BYE4 73 aa6.36□□□□□ -1.39
HIF3A-215ENST00000533145 KRTAP19-1Q8IUB9 90 aa6.34□□□□□ -1.39
HIF3A-215ENST00000533145 M0QZ58 72 aa6.33□□□□□ -1.4
HIF3A-215ENST00000533145 R4GN34 69 aa6.33□□□□□ -1.4
HIF3A-215ENST00000533145 A0A1B0GU33 70 aa6.32□□□□□ -1.4
HIF3A-215ENST00000533145 LCE2BO14633 110 aa6.26□□□□□ -1.41
HIF3A-215ENST00000533145 Q5VV11 94 aa6.26□□□□□ -1.41
HIF3A-215ENST00000533145 PSPHP1O15172 72 aa6.25□□□□□ -1.41
HIF3A-215ENST00000533145 KRTAP13-4Q3LI77 160 aa6.25□□□□□ -1.41
HIF3A-215ENST00000533145 KRTAP19-8Q3LI54 63 aa6.24□□□□□ -1.41
HIF3A-215ENST00000533145 SSPOA2VEC9 5147 aa6.23□□□□□ -1.41
HIF3A-215ENST00000533145 USH2AO75445 5202 aa6.22□□□□□ -1.41
HIF3A-215ENST00000533145 UQCR11O14957 56 aa6.21□□□□□ -1.42
HIF3A-215ENST00000533145 SPATA8Q6RVD6 105 aa6.19□□□□□ -1.42
HIF3A-215ENST00000533145 FCGBPQ9Y6R7 5405 aaPredicted RBP6.16□□□□□ -1.42
HIF3A-215ENST00000533145 A6NN06 94 aa6.15□□□□□ -1.42
HIF3A-215ENST00000533145 MT1BP07438 61 aa6.15□□□□□ -1.42
HIF3A-215ENST00000533145 LINC01554Q52M75 96 aa6.14□□□□□ -1.43
HIF3A-215ENST00000533145 SYNE2Q8WXH0 6885 aaKnown RBP6.13□□□□□ -1.43
HIF3A-215ENST00000533145 MIR22HGQ0VDD5 57 aa6.1□□□□□ -1.43
HIF3A-215ENST00000533145 A0A0D9SG42 100 aa6.07□□□□□ -1.44
HIF3A-215ENST00000533145 A6NED7 52 aa6.07□□□□□ -1.44
HIF3A-215ENST00000533145 A8MU10 97 aa6.06□□□□□ -1.44
HIF3A-215ENST00000533145 PLAC4Q8WY50 150 aa6.06□□□□□ -1.44
HIF3A-215ENST00000533145 MACF1Q9UPN3 7388 aaKnown RBP6.04□□□□□ -1.44
HIF3A-215ENST00000533145 KRTAP12-1P59990 96 aa6.02□□□□□ -1.45
HIF3A-215ENST00000533145 KRTAP12-2P59991 146 aa5.97□□□□□ -1.45
HIF3A-215ENST00000533145 KRTAP19-6Q3LI70 58 aa5.97□□□□□ -1.45
HIF3A-215ENST00000533145 CDC42SE1Q9NRR8 79 aa5.97□□□□□ -1.45
HIF3A-215ENST00000533145 SPINT4Q6UDR6 99 aa5.96□□□□□ -1.46
HIF3A-215ENST00000533145 KRTAP10-5P60370 271 aa5.9□□□□□ -1.46
HIF3A-215ENST00000533145 MT1XP80297 61 aa5.88□□□□□ -1.47
HIF3A-215ENST00000533145 K7ERS5 55 aa5.87□□□□□ -1.47
HIF3A-215ENST00000533145 CAMK2N1Q7Z7J9 78 aa5.87□□□□□ -1.47
HIF3A-215ENST00000533145 PRO2289Q9P1D8 64 aa5.86□□□□□ -1.47
HIF3A-215ENST00000533145 KRTAP6-3Q3LI67 103 aa5.83□□□□□ -1.48
HIF3A-215ENST00000533145 BRK1Q8WUW1 75 aa5.8□□□□□ -1.48
HIF3A-215ENST00000533145 NEBP20929 6669 aa5.75□□□□□ -1.49
HIF3A-215ENST00000533145 SVIPQ8NHG7 77 aa5.73□□□□□ -1.49
HIF3A-215ENST00000533145 C10orf95Q9H7T3 257 aa5.71□□□□□ -1.5
HIF3A-215ENST00000533145 KRTAP20-1Q3LI63 56 aa5.7□□□□□ -1.5
HIF3A-215ENST00000533145 KRTAP10-7P60409 375 aaPredicted RBP5.61□□□□□ -1.51
HIF3A-215ENST00000533145 KRTAP10-12P60413 245 aa5.61□□□□□ -1.51
HIF3A-215ENST00000533145 MUC12Q9UKN1 5478 aa5.6□□□□□ -1.51
HIF3A-215ENST00000533145 TNP1P09430 55 aa5.59□□□□□ -1.51
HIF3A-215ENST00000533145 PRO0628Q9UI54 55 aa5.59□□□□□ -1.51
HIF3A-215ENST00000533145 ROMO1P60602 79 aa5.58□□□□□ -1.52
HIF3A-215ENST00000533145 KRTAP25-1Q3LHN0 102 aa5.55□□□□□ -1.52
HIF3A-215ENST00000533145 PMAIP1Q13794 54 aa5.51□□□□□ -1.53
HIF3A-215ENST00000533145 KRTAP4-8A0A0G2JLE6 195 aa5.45□□□□□ -1.54
HIF3A-215ENST00000533145 KRTAP4-8Q9BYQ9 185 aa5.45□□□□□ -1.54
HIF3A-215ENST00000533145 KRTAP23-1A1A580 65 aa5.42□□□□□ -1.54
HIF3A-215ENST00000533145 MDN1Q9NU22 5596 aa5.38□□□□□ -1.55
HIF3A-215ENST00000533145 KRTAP2-3P0C7H8 128 aa5.38□□□□□ -1.55
HIF3A-215ENST00000533145 KRTAP8-1Q8IUC2 63 aa5.38□□□□□ -1.55
HIF3A-215ENST00000533145 KRTAP2-4Q9BYR9 128 aa5.38□□□□□ -1.55
HIF3A-215ENST00000533145 LCE3AQ5TA76 89 aa5.37□□□□□ -1.55
HIF3A-215ENST00000533145 KMT2DO14686 5537 aa5.36□□□□□ -1.55
HIF3A-215ENST00000533145 KRTAP5-9P26371 169 aa5.32□□□□□ -1.56
HIF3A-215ENST00000533145 PP632Q6XCG6 107 aa5.31□□□□□ -1.56
HIF3A-215ENST00000533145 KRTAP19-7Q3SYF9 63 aa5.26□□□□□ -1.57
HIF3A-215ENST00000533145 KRTAP19-5Q3LI72 72 aa5.24□□□□□ -1.57
HIF3A-215ENST00000533145 SPRR2FQ96RM1 72 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms