RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 UBR4Q5T4S7 5183 aa10.4□□□□□ -0.74
VPS28-208ENST00000527797 LCA10Q71F78 164 aa10.4□□□□□ -0.75
VPS28-208ENST00000527797 KRTAP3-3Q9BYR6 98 aa10.33□□□□□ -0.76
VPS28-208ENST00000527797 MUC2Q02817 5179 aa10.33□□□□□ -0.76
VPS28-208ENST00000527797 RNF213Q63HN8 5207 aa10.3□□□□□ -0.76
VPS28-208ENST00000527797 V9GYY9 64 aa10.25□□□□□ -0.77
VPS28-208ENST00000527797 Q1T7F1 81 aa10.25□□□□□ -0.77
VPS28-208ENST00000527797 LCE2CQ5TA81 110 aa10.24□□□□□ -0.77
VPS28-208ENST00000527797 CSAG1Q6PB30 78 aa10.23□□□□□ -0.77
VPS28-208ENST00000527797 LINC01558Q9Y6Z2 57 aa10.22□□□□□ -0.77
VPS28-208ENST00000527797 A0A1B0GU69 56 aa10.11□□□□□ -0.79
VPS28-208ENST00000527797 SEC61GP60059 68 aa10.11□□□□□ -0.79
VPS28-208ENST00000527797 PRR15LQ9BU68 103 aa10.1□□□□□ -0.79
VPS28-208ENST00000527797 PSPHP1O15172 72 aa10.07□□□□□ -0.8
VPS28-208ENST00000527797 MT1HP80294 61 aa10.06□□□□□ -0.8
VPS28-208ENST00000527797 FLGP20930 4061 aaPredicted RBP10□□□□□ -0.81
VPS28-208ENST00000527797 M0R2T5 61 aa10□□□□□ -0.81
VPS28-208ENST00000527797 H0YAA0 97 aa9.98□□□□□ -0.81
VPS28-208ENST00000527797 Q5VV11 94 aa9.97□□□□□ -0.81
VPS28-208ENST00000527797 ADM2Q7Z4H4 148 aa9.96□□□□□ -0.82
VPS28-208ENST00000527797 FAT4Q6V0I7 4981 aa9.95□□□□□ -0.82
VPS28-208ENST00000527797 KRTAP3-2Q9BYR7 98 aa9.94□□□□□ -0.82
VPS28-208ENST00000527797 KRTAP10-6P60371 365 aaPredicted RBP9.91□□□□□ -0.82
VPS28-208ENST00000527797 P0C880 135 aa9.87□□□□□ -0.83
VPS28-208ENST00000527797 A0A1B0GU33 70 aa9.83□□□□□ -0.84
VPS28-208ENST00000527797 A6NED7 52 aa9.78□□□□□ -0.84
VPS28-208ENST00000527797 UQCR11O14957 56 aa9.78□□□□□ -0.84
VPS28-208ENST00000527797 LCE2AQ5TA79 106 aaPredicted RBP9.73□□□□□ -0.85
VPS28-208ENST00000527797 KRTAP9-8Q9BYQ0 159 aa9.67□□□□□ -0.86
VPS28-208ENST00000527797 MIR22HGQ0VDD5 57 aa9.66□□□□□ -0.86
VPS28-208ENST00000527797 LORP23490 312 aaPredicted RBP9.65□□□□□ -0.86
VPS28-208ENST00000527797 SPATA8Q6RVD6 105 aa9.65□□□□□ -0.86
VPS28-208ENST00000527797 M0QZ58 72 aa9.64□□□□□ -0.87
VPS28-208ENST00000527797 MT2AP02795 61 aa9.64□□□□□ -0.87
VPS28-208ENST00000527797 R4GN34 69 aa9.63□□□□□ -0.87
VPS28-208ENST00000527797 KRTAP13-4Q3LI77 160 aa9.62□□□□□ -0.87
VPS28-208ENST00000527797 CRIPTQ9P021 101 aa9.6□□□□□ -0.87
VPS28-208ENST00000527797 KRTAP10-10P60014 251 aa9.59□□□□□ -0.87
VPS28-208ENST00000527797 BRK1Q8WUW1 75 aa9.58□□□□□ -0.88
VPS28-208ENST00000527797 CDC42SE1Q9NRR8 79 aa9.58□□□□□ -0.88
VPS28-208ENST00000527797 MT1FP04733 61 aa9.57□□□□□ -0.88
VPS28-208ENST00000527797 A8MU10 97 aa9.49□□□□□ -0.89
VPS28-208ENST00000527797 A0A0D9SG42 100 aa9.47□□□□□ -0.89
VPS28-208ENST00000527797 LINC01554Q52M75 96 aa9.44□□□□□ -0.9
VPS28-208ENST00000527797 SPRR2GQ9BYE4 73 aa9.39□□□□□ -0.91
VPS28-208ENST00000527797 KRTAP19-1Q8IUB9 90 aa9.36□□□□□ -0.91
VPS28-208ENST00000527797 KRTAP9-3Q9BYQ3 159 aa9.33□□□□□ -0.92
VPS28-208ENST00000527797 PRO0628Q9UI54 55 aa9.31□□□□□ -0.92
VPS28-208ENST00000527797 K7ERS5 55 aa9.27□□□□□ -0.92
VPS28-208ENST00000527797 KRTAP9-2Q9BYQ4 174 aa9.27□□□□□ -0.92
VPS28-208ENST00000527797 SPINT4Q6UDR6 99 aa9.27□□□□□ -0.93
VPS28-208ENST00000527797 A6NN06 94 aa9.26□□□□□ -0.93
VPS28-208ENST00000527797 KRTAP12-1P59990 96 aa9.26□□□□□ -0.93
VPS28-208ENST00000527797 KRTAP12-2P59991 146 aa9.23□□□□□ -0.93
VPS28-208ENST00000527797 KRTAP19-8Q3LI54 63 aa9.16□□□□□ -0.94
VPS28-208ENST00000527797 PLAC4Q8WY50 150 aa9.11□□□□□ -0.95
VPS28-208ENST00000527797 LCE2BO14633 110 aa9.07□□□□□ -0.96
VPS28-208ENST00000527797 KRTAP9-6A0A140TA67 174 aa9.06□□□□□ -0.96
VPS28-208ENST00000527797 PMAIP1Q13794 54 aa9.06□□□□□ -0.96
VPS28-208ENST00000527797 MT1BP07438 61 aa9.04□□□□□ -0.96
VPS28-208ENST00000527797 CAMK2N1Q7Z7J9 78 aa9.02□□□□□ -0.97
VPS28-208ENST00000527797 SVIPQ8NHG7 77 aa8.94□□□□□ -0.98
VPS28-208ENST00000527797 LCE2DQ5TA82 110 aaPredicted RBP8.91□□□□□ -0.98
VPS28-208ENST00000527797 ROMO1P60602 79 aa8.83□□□□□ -1
VPS28-208ENST00000527797 C10orf95Q9H7T3 257 aa8.78□□□□□ -1
VPS28-208ENST00000527797 USH2AO75445 5202 aa8.75□□□□□ -1.01
VPS28-208ENST00000527797 FSIP2Q5CZC0 6907 aa8.73□□□□□ -1.01
VPS28-208ENST00000527797 MT1XP80297 61 aa8.72□□□□□ -1.01
VPS28-208ENST00000527797 KRTAP10-5P60370 271 aa8.71□□□□□ -1.02
VPS28-208ENST00000527797 PRO2289Q9P1D8 64 aa8.69□□□□□ -1.02
VPS28-208ENST00000527797 CRCT1Q9UGL9 99 aa8.69□□□□□ -1.02
VPS28-208ENST00000527797 KTN1-AS1Q86SY8 53 aa8.63□□□□□ -1.03
VPS28-208ENST00000527797 KRTAP19-6Q3LI70 58 aa8.56□□□□□ -1.04
VPS28-208ENST00000527797 TNP1P09430 55 aa8.55□□□□□ -1.04
VPS28-208ENST00000527797 KRTAP25-1Q3LHN0 102 aa8.55□□□□□ -1.04
VPS28-208ENST00000527797 PRAC1Q96KF2 57 aa8.48□□□□□ -1.05
VPS28-208ENST00000527797 SSPOA2VEC9 5147 aa8.46□□□□□ -1.05
VPS28-208ENST00000527797 KRTAP10-7P60409 375 aaPredicted RBP8.36□□□□□ -1.07
VPS28-208ENST00000527797 KRTAP10-12P60413 245 aa8.28□□□□□ -1.08
VPS28-208ENST00000527797 KRTAP23-1A1A580 65 aa8.25□□□□□ -1.09
VPS28-208ENST00000527797 PP632Q6XCG6 107 aa8.25□□□□□ -1.09
VPS28-208ENST00000527797 LCE3AQ5TA76 89 aa8.18□□□□□ -1.1
VPS28-208ENST00000527797 FCGBPQ9Y6R7 5405 aaPredicted RBP8.13□□□□□ -1.11
VPS28-208ENST00000527797 KRTAP9-7A8MTY7 169 aa8.11□□□□□ -1.11
VPS28-208ENST00000527797 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.11□□□□□ -1.11
VPS28-208ENST00000527797 KRTAP4-8A0A0G2JLE6 195 aa8.07□□□□□ -1.12
VPS28-208ENST00000527797 KRTAP4-8Q9BYQ9 185 aa8.07□□□□□ -1.12
VPS28-208ENST00000527797 KRTAP8-1Q8IUC2 63 aa8.01□□□□□ -1.13
VPS28-208ENST00000527797 KRTAP12-3P60328 96 aa7.87□□□□□ -1.15
VPS28-208ENST00000527797 KRTAP19-5Q3LI72 72 aa7.87□□□□□ -1.15
VPS28-208ENST00000527797 KMT2DO14686 5537 aa7.86□□□□□ -1.15
VPS28-208ENST00000527797 KRTAP19-7Q3SYF9 63 aa7.78□□□□□ -1.16
VPS28-208ENST00000527797 SYNE2Q8WXH0 6885 aaKnown RBP7.74□□□□□ -1.17
VPS28-208ENST00000527797 MACF1Q9UPN3 7388 aaKnown RBP7.74□□□□□ -1.17
VPS28-208ENST00000527797 KRTAP15-1Q3LI76 137 aa7.7□□□□□ -1.18
VPS28-208ENST00000527797 MT1EP04732 61 aa7.66□□□□□ -1.18
VPS28-208ENST00000527797 SPRR2FQ96RM1 72 aa7.6□□□□□ -1.19
VPS28-208ENST00000527797 KRTAP5-9P26371 169 aa7.53□□□□□ -1.2
VPS28-208ENST00000527797 MT1LQ93083 61 aa7.49□□□□□ -1.21
VPS28-208ENST00000527797 KRTAP6-3Q3LI67 103 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms