RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 PRO0628Q9UI54 55 aa9.8□□□□□ -0.84
VPS28-207ENST00000526977 COX6B2Q6YFQ2 88 aa9.72□□□□□ -0.85
VPS28-207ENST00000526977 MUC17Q685J3 4493 aa9.71□□□□□ -0.86
VPS28-207ENST00000526977 A6NED7 52 aa9.64□□□□□ -0.87
VPS28-207ENST00000526977 A8MU10 97 aa9.64□□□□□ -0.87
VPS28-207ENST00000526977 KRTAP4-1Q9BYQ7 146 aa9.63□□□□□ -0.87
VPS28-207ENST00000526977 A0A1B0GU69 56 aa9.6□□□□□ -0.87
VPS28-207ENST00000526977 LCA10Q71F78 164 aa9.59□□□□□ -0.87
VPS28-207ENST00000526977 SPTSSBQ8NFR3 76 aa9.58□□□□□ -0.88
VPS28-207ENST00000526977 RBM12B-AS1Q9P1G2 102 aa9.56□□□□□ -0.88
VPS28-207ENST00000526977 UBR4Q5T4S7 5183 aa9.53□□□□□ -0.88
VPS28-207ENST00000526977 CDC42SE1Q9NRR8 79 aa9.53□□□□□ -0.88
VPS28-207ENST00000526977 MUC2Q02817 5179 aa9.49□□□□□ -0.89
VPS28-207ENST00000526977 KRTAP3-3Q9BYR6 98 aa9.43□□□□□ -0.9
VPS28-207ENST00000526977 SEC61GP60059 68 aa9.42□□□□□ -0.9
VPS28-207ENST00000526977 H1FX-AS1Q4G0G2 97 aa9.4□□□□□ -0.9
VPS28-207ENST00000526977 RNF213Q63HN8 5207 aa9.4□□□□□ -0.9
VPS28-207ENST00000526977 S4R3F8 94 aa9.38□□□□□ -0.91
VPS28-207ENST00000526977 UQCR11O14957 56 aa9.38□□□□□ -0.91
VPS28-207ENST00000526977 SPATA8Q6RVD6 105 aa9.36□□□□□ -0.91
VPS28-207ENST00000526977 KRTAP19-2Q3LHN2 52 aa9.35□□□□□ -0.91
VPS28-207ENST00000526977 MIR22HGQ0VDD5 57 aa9.31□□□□□ -0.92
VPS28-207ENST00000526977 PMAIP1Q13794 54 aa9.31□□□□□ -0.92
VPS28-207ENST00000526977 A0A1B0GU33 70 aa9.22□□□□□ -0.93
VPS28-207ENST00000526977 A6NN06 94 aa9.22□□□□□ -0.93
VPS28-207ENST00000526977 LCE2CQ5TA81 110 aa9.21□□□□□ -0.93
VPS28-207ENST00000526977 H0YAA0 97 aa9.17□□□□□ -0.94
VPS28-207ENST00000526977 KRTAP10-6P60371 365 aaPredicted RBP9.17□□□□□ -0.94
VPS28-207ENST00000526977 KRTAP3-2Q9BYR7 98 aa9.17□□□□□ -0.94
VPS28-207ENST00000526977 CSAG1Q6PB30 78 aa9.14□□□□□ -0.95
VPS28-207ENST00000526977 FLGP20930 4061 aaPredicted RBP9.13□□□□□ -0.95
VPS28-207ENST00000526977 FAT4Q6V0I7 4981 aa9.1□□□□□ -0.95
VPS28-207ENST00000526977 P0C880 135 aa9.05□□□□□ -0.96
VPS28-207ENST00000526977 MT1HP80294 61 aa9.05□□□□□ -0.96
VPS28-207ENST00000526977 ADM2Q7Z4H4 148 aa9.04□□□□□ -0.96
VPS28-207ENST00000526977 KTN1-AS1Q86SY8 53 aa9.01□□□□□ -0.97
VPS28-207ENST00000526977 M0R2T5 61 aa8.98□□□□□ -0.97
VPS28-207ENST00000526977 KRTAP13-4Q3LI77 160 aa8.97□□□□□ -0.97
VPS28-207ENST00000526977 LCE2AQ5TA79 106 aaPredicted RBP8.84□□□□□ -0.99
VPS28-207ENST00000526977 A0A0D9SG42 100 aa8.82□□□□□ -1
VPS28-207ENST00000526977 M0QZ58 72 aa8.78□□□□□ -1
VPS28-207ENST00000526977 K7ERS5 55 aa8.75□□□□□ -1.01
VPS28-207ENST00000526977 PRAC1Q96KF2 57 aa8.73□□□□□ -1.01
VPS28-207ENST00000526977 LORP23490 312 aaPredicted RBP8.71□□□□□ -1.02
VPS28-207ENST00000526977 KRTAP9-8Q9BYQ0 159 aa8.7□□□□□ -1.02
VPS28-207ENST00000526977 R4GN34 69 aa8.66□□□□□ -1.02
VPS28-207ENST00000526977 MT2AP02795 61 aa8.64□□□□□ -1.03
VPS28-207ENST00000526977 KRTAP12-2P59991 146 aa8.63□□□□□ -1.03
VPS28-207ENST00000526977 KRTAP12-1P59990 96 aa8.63□□□□□ -1.03
VPS28-207ENST00000526977 KRTAP10-10P60014 251 aa8.59□□□□□ -1.03
VPS28-207ENST00000526977 CRIPTQ9P021 101 aa8.59□□□□□ -1.03
VPS28-207ENST00000526977 MT1FP04733 61 aa8.58□□□□□ -1.04
VPS28-207ENST00000526977 SPINT4Q6UDR6 99 aa8.58□□□□□ -1.04
VPS28-207ENST00000526977 LINC01554Q52M75 96 aa8.56□□□□□ -1.04
VPS28-207ENST00000526977 ROMO1P60602 79 aa8.51□□□□□ -1.05
VPS28-207ENST00000526977 SPRR2GQ9BYE4 73 aa8.42□□□□□ -1.06
VPS28-207ENST00000526977 KRTAP9-3Q9BYQ3 159 aa8.39□□□□□ -1.07
VPS28-207ENST00000526977 KRTAP25-1Q3LHN0 102 aa8.38□□□□□ -1.07
VPS28-207ENST00000526977 KRTAP19-1Q8IUB9 90 aa8.38□□□□□ -1.07
VPS28-207ENST00000526977 KRTAP19-8Q3LI54 63 aa8.21□□□□□ -1.1
VPS28-207ENST00000526977 LCE2BO14633 110 aa8.17□□□□□ -1.1
VPS28-207ENST00000526977 C10orf95Q9H7T3 257 aa8.17□□□□□ -1.1
VPS28-207ENST00000526977 CAMK2N1Q7Z7J9 78 aa8.15□□□□□ -1.1
VPS28-207ENST00000526977 LCE2DQ5TA82 110 aaPredicted RBP8.12□□□□□ -1.11
VPS28-207ENST00000526977 PLAC4Q8WY50 150 aa8.12□□□□□ -1.11
VPS28-207ENST00000526977 MT1BP07438 61 aa8.08□□□□□ -1.12
VPS28-207ENST00000526977 H3BS24 57 aa8.07□□□□□ -1.12
VPS28-207ENST00000526977 USH2AO75445 5202 aa7.97□□□□□ -1.13
VPS28-207ENST00000526977 KRTAP9-2Q9BYQ4 174 aa7.86□□□□□ -1.15
VPS28-207ENST00000526977 FSIP2Q5CZC0 6907 aa7.81□□□□□ -1.16
VPS28-207ENST00000526977 TNP1P09430 55 aa7.8□□□□□ -1.16
VPS28-207ENST00000526977 PRO2289Q9P1D8 64 aa7.8□□□□□ -1.16
VPS28-207ENST00000526977 MT1XP80297 61 aa7.79□□□□□ -1.16
VPS28-207ENST00000526977 KRTAP10-5P60370 271 aa7.78□□□□□ -1.16
VPS28-207ENST00000526977 KRTAP19-6Q3LI70 58 aa7.74□□□□□ -1.17
VPS28-207ENST00000526977 SSPOA2VEC9 5147 aa7.74□□□□□ -1.17
VPS28-207ENST00000526977 PP632Q6XCG6 107 aa7.71□□□□□ -1.18
VPS28-207ENST00000526977 KRTAP23-1A1A580 65 aa7.63□□□□□ -1.19
VPS28-207ENST00000526977 CRCT1Q9UGL9 99 aa7.58□□□□□ -1.2
VPS28-207ENST00000526977 KRTAP15-1Q3LI76 137 aa7.55□□□□□ -1.2
VPS28-207ENST00000526977 FCGBPQ9Y6R7 5405 aaPredicted RBP7.46□□□□□ -1.22
VPS28-207ENST00000526977 KRTAP10-7P60409 375 aaPredicted RBP7.45□□□□□ -1.22
VPS28-207ENST00000526977 LCE3AQ5TA76 89 aa7.45□□□□□ -1.22
VPS28-207ENST00000526977 KRTAP10-12P60413 245 aa7.41□□□□□ -1.22
VPS28-207ENST00000526977 KRTAP9-6A0A140TA67 174 aa7.33□□□□□ -1.24
VPS28-207ENST00000526977 KRTAP8-1Q8IUC2 63 aa7.3□□□□□ -1.24
VPS28-207ENST00000526977 A0A0A0MQY5 61 aa7.22□□□□□ -1.25
VPS28-207ENST00000526977 KRTAP4-8A0A0G2JLE6 195 aa7.21□□□□□ -1.26
VPS28-207ENST00000526977 KRTAP4-8Q9BYQ9 185 aa7.21□□□□□ -1.26
VPS28-207ENST00000526977 KMT2DO14686 5537 aa7.18□□□□□ -1.26
VPS28-207ENST00000526977 MACF1Q9UPN3 7388 aaKnown RBP7.15□□□□□ -1.26
VPS28-207ENST00000526977 KRTAP12-3P60328 96 aa7.14□□□□□ -1.27
VPS28-207ENST00000526977 NDUFAF8A1L188 74 aa7.13□□□□□ -1.27
VPS28-207ENST00000526977 SPRR5A0A1B0GTR4 108 aa7.05□□□□□ -1.28
VPS28-207ENST00000526977 KRTAP19-5Q3LI72 72 aa7.02□□□□□ -1.29
VPS28-207ENST00000526977 KRTAP9-1A8MXZ3 250 aaPredicted RBP7□□□□□ -1.29
VPS28-207ENST00000526977 SYNE2Q8WXH0 6885 aaKnown RBP6.97□□□□□ -1.29
VPS28-207ENST00000526977 KRTAP19-7Q3SYF9 63 aa6.95□□□□□ -1.3
VPS28-207ENST00000526977 LUZP6Q538Z0 58 aa6.94□□□□□ -1.3
VPS28-207ENST00000526977 KRTAP5-9P26371 169 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms