RNA–Protein interactions for RNA: ENST00000520497.1

VAPB-206, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 937 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-206ENST00000520497 A8MUU9 505 aa4.62□□□□□ -1.67
VAPB-206ENST00000520497 Q5W150 140 aa4.61□□□□□ -1.67
VAPB-206ENST00000520497 Q75L30 129 aa4.61□□□□□ -1.67
VAPB-206ENST00000520497 SPANXA2-OT1Q8N9U9 137 aa4.61□□□□□ -1.67
VAPB-206ENST00000520497 CYSTM1Q9H1C7 97 aa4.61□□□□□ -1.67
VAPB-206ENST00000520497 IGKV2-30P06310 120 aa4.59□□□□□ -1.67
VAPB-206ENST00000520497 C7orf65Q6ZTY9 151 aa4.59□□□□□ -1.67
VAPB-206ENST00000520497 ATP11AUNQ6ZP68 121 aa4.58□□□□□ -1.68
VAPB-206ENST00000520497 CYP4F30PQ9H0H9 118 aa4.58□□□□□ -1.68
VAPB-206ENST00000520497 IGKV2D-30A0A075B6S6 120 aa4.57□□□□□ -1.68
VAPB-206ENST00000520497 RPL37P61927 97 aaKnown RBP4.57□□□□□ -1.68
VAPB-206ENST00000520497 PCOTHQ58A44 107 aa4.57□□□□□ -1.68
VAPB-206ENST00000520497 SERP1Q9Y6X1 66 aa4.57□□□□□ -1.68
VAPB-206ENST00000520497 RPS28P62857 69 aaKnown RBP4.54□□□□□ -1.68
VAPB-206ENST00000520497 HRES1P13985 223 aa4.5□□□□□ -1.69
VAPB-206ENST00000520497 ACYP2P14621 99 aa4.49□□□□□ -1.69
VAPB-206ENST00000520497 A8MUN3 132 aa4.48□□□□□ -1.69
VAPB-206ENST00000520497 SPINK7P58062 85 aa4.48□□□□□ -1.69
VAPB-206ENST00000520497 SEC61BP60468 96 aaKnown RBP4.47□□□□□ -1.69
VAPB-206ENST00000520497 MUC17Q685J3 4493 aa4.46□□□□□ -1.69
VAPB-206ENST00000520497 DMAC1Q96GE9 116 aa4.46□□□□□ -1.7
VAPB-206ENST00000520497 MUC2Q02817 5179 aa4.45□□□□□ -1.7
VAPB-206ENST00000520497 SMIM26A0A096LP01 95 aa4.45□□□□□ -1.7
VAPB-206ENST00000520497 CHKB-CPT1BH3BT56 60 aa4.45□□□□□ -1.7
VAPB-206ENST00000520497 COA5Q86WW8 74 aa4.44□□□□□ -1.7
VAPB-206ENST00000520497 C4orf26Q17RF5 130 aa4.41□□□□□ -1.7
VAPB-206ENST00000520497 SPTSSBQ8NFR3 76 aa4.41□□□□□ -1.7
VAPB-206ENST00000520497 KRTAP4-1Q9BYQ7 146 aa4.41□□□□□ -1.7
VAPB-206ENST00000520497 V9GYY9 64 aa4.41□□□□□ -1.7
VAPB-206ENST00000520497 FAT4Q6V0I7 4981 aa4.39□□□□□ -1.71
VAPB-206ENST00000520497 COX6B2Q6YFQ2 88 aa4.39□□□□□ -1.71
VAPB-206ENST00000520497 RBM12B-AS1Q9P1G2 102 aa4.38□□□□□ -1.71
VAPB-206ENST00000520497 MPLKIPQ8TAP9 179 aa4.37□□□□□ -1.71
VAPB-206ENST00000520497 Q1T7F1 81 aa4.33□□□□□ -1.72
VAPB-206ENST00000520497 PRR15LQ9BU68 103 aa4.31□□□□□ -1.72
VAPB-206ENST00000520497 KRTAP3-1Q9BYR8 98 aa4.31□□□□□ -1.72
VAPB-206ENST00000520497 KRTAP19-2Q3LHN2 52 aa4.3□□□□□ -1.72
VAPB-206ENST00000520497 H1FX-AS1Q4G0G2 97 aa4.3□□□□□ -1.72
VAPB-206ENST00000520497 SEC61GP60059 68 aa4.28□□□□□ -1.72
VAPB-206ENST00000520497 S4R3F8 94 aa4.28□□□□□ -1.72
VAPB-206ENST00000520497 LINC01558Q9Y6Z2 57 aa4.27□□□□□ -1.73
VAPB-206ENST00000520497 FLGP20930 4061 aaPredicted RBP4.26□□□□□ -1.73
VAPB-206ENST00000520497 A0A1B0GU69 56 aa4.25□□□□□ -1.73
VAPB-206ENST00000520497 PSPHP1O15172 72 aa4.23□□□□□ -1.73
VAPB-206ENST00000520497 CSAG1Q6PB30 78 aa4.2□□□□□ -1.74
VAPB-206ENST00000520497 LCA10Q71F78 164 aa4.2□□□□□ -1.74
VAPB-206ENST00000520497 Q5VV11 94 aa4.17□□□□□ -1.74
VAPB-206ENST00000520497 A6NED7 52 aa4.16□□□□□ -1.74
VAPB-206ENST00000520497 FSIP2Q5CZC0 6907 aa4.14□□□□□ -1.75
VAPB-206ENST00000520497 UQCR11O14957 56 aa4.13□□□□□ -1.75
VAPB-206ENST00000520497 MT1HP80294 61 aa4.13□□□□□ -1.75
VAPB-206ENST00000520497 BRK1Q8WUW1 75 aa4.12□□□□□ -1.75
VAPB-206ENST00000520497 CRCT1Q9UGL9 99 aa4.12□□□□□ -1.75
VAPB-206ENST00000520497 A0A1B0GU33 70 aa4.09□□□□□ -1.75
VAPB-206ENST00000520497 H0YAA0 97 aa4.09□□□□□ -1.75
VAPB-206ENST00000520497 CDC42SE1Q9NRR8 79 aa4.08□□□□□ -1.76
VAPB-206ENST00000520497 MIR22HGQ0VDD5 57 aa4.07□□□□□ -1.76
VAPB-206ENST00000520497 KRTAP10-6P60371 365 aaPredicted RBP4.06□□□□□ -1.76
VAPB-206ENST00000520497 ADM2Q7Z4H4 148 aa4.06□□□□□ -1.76
VAPB-206ENST00000520497 SVIPQ8NHG7 77 aa4.06□□□□□ -1.76
VAPB-206ENST00000520497 PRO0628Q9UI54 55 aa4.05□□□□□ -1.76
VAPB-206ENST00000520497 M0R2T5 61 aa4.03□□□□□ -1.76
VAPB-206ENST00000520497 SPATA8Q6RVD6 105 aa4.03□□□□□ -1.76
VAPB-206ENST00000520497 M0QZ58 72 aa4□□□□□ -1.77
VAPB-206ENST00000520497 K7ERS5 55 aa3.98□□□□□ -1.77
VAPB-206ENST00000520497 P0C880 135 aa3.97□□□□□ -1.77
VAPB-206ENST00000520497 R4GN34 69 aa3.96□□□□□ -1.78
VAPB-206ENST00000520497 MT2AP02795 61 aa3.95□□□□□ -1.78
VAPB-206ENST00000520497 CRIPTQ9P021 101 aa3.95□□□□□ -1.78
VAPB-206ENST00000520497 MT1FP04733 61 aa3.93□□□□□ -1.78
VAPB-206ENST00000520497 PMAIP1Q13794 54 aa3.9□□□□□ -1.79
VAPB-206ENST00000520497 A0A0D9SG42 100 aa3.89□□□□□ -1.79
VAPB-206ENST00000520497 A8MU10 97 aa3.89□□□□□ -1.79
VAPB-206ENST00000520497 USH2AO75445 5202 aa3.88□□□□□ -1.79
VAPB-206ENST00000520497 KRTAP10-10P60014 251 aa3.88□□□□□ -1.79
VAPB-206ENST00000520497 KRTAP13-4Q3LI77 160 aa3.88□□□□□ -1.79
VAPB-206ENST00000520497 KRTAP23-1A1A580 65 aa3.87□□□□□ -1.79
VAPB-206ENST00000520497 SSPOA2VEC9 5147 aa3.87□□□□□ -1.79
VAPB-206ENST00000520497 KRTAP15-1Q3LI76 137 aa3.85□□□□□ -1.79
VAPB-206ENST00000520497 LINC01554Q52M75 96 aa3.85□□□□□ -1.79
VAPB-206ENST00000520497 SPRR2GQ9BYE4 73 aa3.83□□□□□ -1.8
VAPB-206ENST00000520497 A6NN06 94 aa3.82□□□□□ -1.8
VAPB-206ENST00000520497 SPINT4Q6UDR6 99 aa3.82□□□□□ -1.8
VAPB-206ENST00000520497 FCGBPQ9Y6R7 5405 aaPredicted RBP3.8□□□□□ -1.8
VAPB-206ENST00000520497 KRTAP12-1P59990 96 aa3.78□□□□□ -1.8
VAPB-206ENST00000520497 KRTAP12-2P59991 146 aa3.76□□□□□ -1.81
VAPB-206ENST00000520497 KRTAP19-8Q3LI54 63 aa3.75□□□□□ -1.81
VAPB-206ENST00000520497 KTN1-AS1Q86SY8 53 aa3.75□□□□□ -1.81
VAPB-206ENST00000520497 CAMK2N1Q7Z7J9 78 aa3.74□□□□□ -1.81
VAPB-206ENST00000520497 PLAC4Q8WY50 150 aa3.74□□□□□ -1.81
VAPB-206ENST00000520497 ROMO1P60602 79 aa3.73□□□□□ -1.81
VAPB-206ENST00000520497 SYNE2Q8WXH0 6885 aaKnown RBP3.71□□□□□ -1.82
VAPB-206ENST00000520497 MT1BP07438 61 aa3.7□□□□□ -1.82
VAPB-206ENST00000520497 MACF1Q9UPN3 7388 aaKnown RBP3.69□□□□□ -1.82
VAPB-206ENST00000520497 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.67□□□□□ -1.82
VAPB-206ENST00000520497 KRTAP19-6Q3LI70 58 aa3.63□□□□□ -1.83
VAPB-206ENST00000520497 KRTAP25-1Q3LHN0 102 aa3.58□□□□□ -1.84
VAPB-206ENST00000520497 PRAC1Q96KF2 57 aa3.57□□□□□ -1.84
VAPB-206ENST00000520497 PRO2289Q9P1D8 64 aa3.57□□□□□ -1.84
VAPB-206ENST00000520497 MT1XP80297 61 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms