RNA–Protein interactions for RNA: ENST00000507247.5

RNF4-208, Transcript of ring finger protein 4, humanhuman

TSL 1 (best)

Gene RNF4, Length 616 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-208ENST00000507247 M0R2T5 61 aa6.89□□□□□ -1.31
RNF4-208ENST00000507247 LCA10Q71F78 164 aa6.87□□□□□ -1.31
RNF4-208ENST00000507247 LCE2DQ5TA82 110 aaPredicted RBP6.86□□□□□ -1.31
RNF4-208ENST00000507247 KRTAP3-3Q9BYR6 98 aa6.84□□□□□ -1.31
RNF4-208ENST00000507247 ACYP2P14621 99 aa6.82□□□□□ -1.32
RNF4-208ENST00000507247 KRTAP10-6P60371 365 aaPredicted RBP6.82□□□□□ -1.32
RNF4-208ENST00000507247 PCP4P48539 62 aa6.8□□□□□ -1.32
RNF4-208ENST00000507247 LORP23490 312 aaPredicted RBP6.79□□□□□ -1.32
RNF4-208ENST00000507247 FSIP2Q5CZC0 6907 aa6.76□□□□□ -1.33
RNF4-208ENST00000507247 CSAG1Q6PB30 78 aa6.75□□□□□ -1.33
RNF4-208ENST00000507247 CRCT1Q9UGL9 99 aa6.74□□□□□ -1.33
RNF4-208ENST00000507247 KRTAP9-8Q9BYQ0 159 aa6.73□□□□□ -1.33
RNF4-208ENST00000507247 TMEM258P61165 79 aa6.72□□□□□ -1.33
RNF4-208ENST00000507247 COA5Q86WW8 74 aa6.72□□□□□ -1.33
RNF4-208ENST00000507247 ATP5EP56381 51 aaPredicted RBP6.71□□□□□ -1.34
RNF4-208ENST00000507247 CHKB-CPT1BH3BT56 60 aa6.7□□□□□ -1.34
RNF4-208ENST00000507247 MT2AP02795 61 aa6.68□□□□□ -1.34
RNF4-208ENST00000507247 MT1FP04733 61 aa6.64□□□□□ -1.35
RNF4-208ENST00000507247 SPTSSBQ8NFR3 76 aa6.62□□□□□ -1.35
RNF4-208ENST00000507247 H0YAA0 97 aa6.58□□□□□ -1.36
RNF4-208ENST00000507247 KRTAP10-10P60014 251 aa6.58□□□□□ -1.36
RNF4-208ENST00000507247 ADM2Q7Z4H4 148 aa6.55□□□□□ -1.36
RNF4-208ENST00000507247 KRTAP3-2Q9BYR7 98 aa6.51□□□□□ -1.37
RNF4-208ENST00000507247 SERP1Q9Y6X1 66 aa6.51□□□□□ -1.37
RNF4-208ENST00000507247 KRTAP9-3Q9BYQ3 159 aa6.5□□□□□ -1.37
RNF4-208ENST00000507247 P0C880 135 aa6.49□□□□□ -1.37
RNF4-208ENST00000507247 KRTAP19-1Q8IUB9 90 aa6.4□□□□□ -1.38
RNF4-208ENST00000507247 USH2AO75445 5202 aa6.4□□□□□ -1.39
RNF4-208ENST00000507247 CRIPTQ9P021 101 aa6.39□□□□□ -1.39
RNF4-208ENST00000507247 LCE2BO14633 110 aa6.38□□□□□ -1.39
RNF4-208ENST00000507247 SPRR2GQ9BYE4 73 aa6.37□□□□□ -1.39
RNF4-208ENST00000507247 SSPOA2VEC9 5147 aa6.37□□□□□ -1.39
RNF4-208ENST00000507247 SEC61GP60059 68 aa6.36□□□□□ -1.39
RNF4-208ENST00000507247 LINC01558Q9Y6Z2 57 aa6.35□□□□□ -1.39
RNF4-208ENST00000507247 RPS28P62857 69 aaKnown RBP6.34□□□□□ -1.39
RNF4-208ENST00000507247 A0A1B0GU69 56 aa6.33□□□□□ -1.4
RNF4-208ENST00000507247 R4GN34 69 aa6.32□□□□□ -1.4
RNF4-208ENST00000507247 M0QZ58 72 aa6.31□□□□□ -1.4
RNF4-208ENST00000507247 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.3□□□□□ -1.4
RNF4-208ENST00000507247 SMIM26A0A096LP01 95 aa6.29□□□□□ -1.4
RNF4-208ENST00000507247 KRTAP13-4Q3LI77 160 aa6.27□□□□□ -1.41
RNF4-208ENST00000507247 KRTAP19-8Q3LI54 63 aa6.26□□□□□ -1.41
RNF4-208ENST00000507247 Q1T7F1 81 aa6.25□□□□□ -1.41
RNF4-208ENST00000507247 PRR15LQ9BU68 103 aa6.25□□□□□ -1.41
RNF4-208ENST00000507247 A0A1B0GU33 70 aa6.24□□□□□ -1.41
RNF4-208ENST00000507247 KRTAP9-7A8MTY7 169 aa6.24□□□□□ -1.41
RNF4-208ENST00000507247 MT1BP07438 61 aa6.23□□□□□ -1.41
RNF4-208ENST00000507247 V9GYY9 64 aa6.23□□□□□ -1.41
RNF4-208ENST00000507247 FCGBPQ9Y6R7 5405 aaPredicted RBP6.21□□□□□ -1.41
RNF4-208ENST00000507247 LINC01554Q52M75 96 aa6.2□□□□□ -1.42
RNF4-208ENST00000507247 Q5VV11 94 aa6.19□□□□□ -1.42
RNF4-208ENST00000507247 SPATA8Q6RVD6 105 aa6.19□□□□□ -1.42
RNF4-208ENST00000507247 PSPHP1O15172 72 aa6.17□□□□□ -1.42
RNF4-208ENST00000507247 A0A0D9SG42 100 aa6.1□□□□□ -1.43
RNF4-208ENST00000507247 UQCR11O14957 56 aa6.08□□□□□ -1.44
RNF4-208ENST00000507247 A6NN06 94 aa6.07□□□□□ -1.44
RNF4-208ENST00000507247 A8MU10 97 aa6.06□□□□□ -1.44
RNF4-208ENST00000507247 MACF1Q9UPN3 7388 aaKnown RBP6.06□□□□□ -1.44
RNF4-208ENST00000507247 KRTAP19-6Q3LI70 58 aa6.05□□□□□ -1.44
RNF4-208ENST00000507247 PLAC4Q8WY50 150 aa6.05□□□□□ -1.44
RNF4-208ENST00000507247 SYNE2Q8WXH0 6885 aaKnown RBP6.02□□□□□ -1.45
RNF4-208ENST00000507247 KRTAP12-1P59990 96 aa6□□□□□ -1.45
RNF4-208ENST00000507247 MIR22HGQ0VDD5 57 aa6□□□□□ -1.45
RNF4-208ENST00000507247 A6NED7 52 aa5.97□□□□□ -1.45
RNF4-208ENST00000507247 KRTAP12-2P59991 146 aa5.97□□□□□ -1.45
RNF4-208ENST00000507247 KRTAP10-5P60370 271 aa5.96□□□□□ -1.46
RNF4-208ENST00000507247 SPINT4Q6UDR6 99 aa5.96□□□□□ -1.46
RNF4-208ENST00000507247 MT1XP80297 61 aa5.95□□□□□ -1.46
RNF4-208ENST00000507247 CAMK2N1Q7Z7J9 78 aa5.87□□□□□ -1.47
RNF4-208ENST00000507247 PRO2289Q9P1D8 64 aa5.86□□□□□ -1.47
RNF4-208ENST00000507247 CDC42SE1Q9NRR8 79 aa5.83□□□□□ -1.48
RNF4-208ENST00000507247 KRTAP6-3Q3LI67 103 aa5.82□□□□□ -1.48
RNF4-208ENST00000507247 K7ERS5 55 aa5.74□□□□□ -1.49
RNF4-208ENST00000507247 C10orf95Q9H7T3 257 aa5.7□□□□□ -1.5
RNF4-208ENST00000507247 KRTAP10-7P60409 375 aaPredicted RBP5.69□□□□□ -1.5
RNF4-208ENST00000507247 BRK1Q8WUW1 75 aa5.67□□□□□ -1.5
RNF4-208ENST00000507247 NEBP20929 6669 aa5.64□□□□□ -1.51
RNF4-208ENST00000507247 KRTAP10-12P60413 245 aa5.63□□□□□ -1.51
RNF4-208ENST00000507247 MUC12Q9UKN1 5478 aa5.61□□□□□ -1.51
RNF4-208ENST00000507247 KRTAP4-8A0A0G2JLE6 195 aa5.55□□□□□ -1.52
RNF4-208ENST00000507247 KRTAP4-8Q9BYQ9 185 aa5.55□□□□□ -1.52
RNF4-208ENST00000507247 TNP1P09430 55 aa5.54□□□□□ -1.52
RNF4-208ENST00000507247 KRTAP5-9P26371 169 aa5.51□□□□□ -1.53
RNF4-208ENST00000507247 ROMO1P60602 79 aa5.49□□□□□ -1.53
RNF4-208ENST00000507247 KRTAP25-1Q3LHN0 102 aa5.46□□□□□ -1.54
RNF4-208ENST00000507247 KRTAP8-1Q8IUC2 63 aa5.46□□□□□ -1.54
RNF4-208ENST00000507247 KMT2DO14686 5537 aa5.45□□□□□ -1.54
RNF4-208ENST00000507247 KRTAP20-1Q3LI63 56 aa5.45□□□□□ -1.54
RNF4-208ENST00000507247 LCE3AQ5TA76 89 aa5.41□□□□□ -1.54
RNF4-208ENST00000507247 MDN1Q9NU22 5596 aa5.39□□□□□ -1.55
RNF4-208ENST00000507247 PRO0628Q9UI54 55 aa5.36□□□□□ -1.55
RNF4-208ENST00000507247 PMAIP1Q13794 54 aa5.34□□□□□ -1.55
RNF4-208ENST00000507247 SPRR2FQ96RM1 72 aa5.33□□□□□ -1.56
RNF4-208ENST00000507247 KRTAP19-7Q3SYF9 63 aa5.31□□□□□ -1.56
RNF4-208ENST00000507247 KRTAP19-5Q3LI72 72 aa5.29□□□□□ -1.56
RNF4-208ENST00000507247 SPRR2EP22531 72 aa5.28□□□□□ -1.56
RNF4-208ENST00000507247 SPRR2BP35325 72 aa5.28□□□□□ -1.56
RNF4-208ENST00000507247 SPRR2AP35326 72 aa5.28□□□□□ -1.56
RNF4-208ENST00000507247 KRTAP2-3P0C7H8 128 aa5.27□□□□□ -1.57
RNF4-208ENST00000507247 KRTAP2-4Q9BYR9 128 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms