RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 FLGP20930 4061 aaPredicted RBP5.03□□□□□ -1.6
NUP54-203ENST00000504173 KRTAP4-8A0A0G2JLE6 195 aa5.02□□□□□ -1.61
NUP54-203ENST00000504173 MP68P56378 58 aa5.02□□□□□ -1.61
NUP54-203ENST00000504173 CYP4F30PQ9H0H9 118 aa5.01□□□□□ -1.61
NUP54-203ENST00000504173 C4orf26Q17RF5 130 aa5□□□□□ -1.61
NUP54-203ENST00000504173 KRTAP20-1Q3LI63 56 aa5□□□□□ -1.61
NUP54-203ENST00000504173 C5orf47Q569G3 176 aa5□□□□□ -1.61
NUP54-203ENST00000504173 C1orf64Q8NEQ6 169 aa5□□□□□ -1.61
NUP54-203ENST00000504173 LINC00208Q96KT6 92 aa5□□□□□ -1.61
NUP54-203ENST00000504173 SMIM20Q8N5G0 67 aa4.99□□□□□ -1.61
NUP54-203ENST00000504173 TRAV7A0A075B6U4 112 aa4.97□□□□□ -1.61
NUP54-203ENST00000504173 H3BPC8 53 aa4.97□□□□□ -1.61
NUP54-203ENST00000504173 H1FX-AS1Q4G0G2 97 aa4.95□□□□□ -1.62
NUP54-203ENST00000504173 KLKP1Q107X0 134 aa4.91□□□□□ -1.62
NUP54-203ENST00000504173 SERP2Q8N6R1 65 aa4.9□□□□□ -1.63
NUP54-203ENST00000504173 KRTAP3-1Q9BYR8 98 aa4.9□□□□□ -1.63
NUP54-203ENST00000504173 LCE1DQ5T752 114 aa4.88□□□□□ -1.63
NUP54-203ENST00000504173 KRTAP9-8Q9BYQ0 159 aa4.87□□□□□ -1.63
NUP54-203ENST00000504173 MUC12Q9UKN1 5478 aa4.87□□□□□ -1.63
NUP54-203ENST00000504173 S4R3F8 94 aa4.86□□□□□ -1.63
NUP54-203ENST00000504173 KRTAP19-6Q3LI70 58 aa4.85□□□□□ -1.63
NUP54-203ENST00000504173 KRTAP4-7Q9BYR0 210 aa4.85□□□□□ -1.63
NUP54-203ENST00000504173 SNURFQ9Y675 71 aa4.85□□□□□ -1.63
NUP54-203ENST00000504173 A8MUN3 132 aa4.84□□□□□ -1.63
NUP54-203ENST00000504173 C20orf197Q8N268 126 aa4.84□□□□□ -1.63
NUP54-203ENST00000504173 COX7CP15954 63 aa4.82□□□□□ -1.64
NUP54-203ENST00000504173 LCA10Q71F78 164 aa4.81□□□□□ -1.64
NUP54-203ENST00000504173 ANAPC13Q9BS18 74 aa4.81□□□□□ -1.64
NUP54-203ENST00000504173 DMAC1Q96GE9 116 aa4.79□□□□□ -1.64
NUP54-203ENST00000504173 CSAG1Q6PB30 78 aa4.78□□□□□ -1.64
NUP54-203ENST00000504173 MT2AP02795 61 aa4.76□□□□□ -1.65
NUP54-203ENST00000504173 NDUFC1O43677 76 aa4.75□□□□□ -1.65
NUP54-203ENST00000504173 KRTAP9-3Q9BYQ3 159 aa4.75□□□□□ -1.65
NUP54-203ENST00000504173 SPANXA2-OT1Q8N9U9 137 aa4.74□□□□□ -1.65
NUP54-203ENST00000504173 ACYP2P14621 99 aa4.73□□□□□ -1.65
NUP54-203ENST00000504173 KRTAP10-10P60014 251 aa4.73□□□□□ -1.65
NUP54-203ENST00000504173 LCE4AQ5TA78 99 aa4.73□□□□□ -1.65
NUP54-203ENST00000504173 KRTAP4-9Q9BYQ8 210 aa4.73□□□□□ -1.65
NUP54-203ENST00000504173 MT1FP04733 61 aa4.72□□□□□ -1.65
NUP54-203ENST00000504173 KMT2DO14686 5537 aa4.7□□□□□ -1.66
NUP54-203ENST00000504173 CYSTM1Q9H1C7 97 aa4.7□□□□□ -1.66
NUP54-203ENST00000504173 CCDC179H3BU77 68 aa4.69□□□□□ -1.66
NUP54-203ENST00000504173 KRTAP2-3P0C7H8 128 aa4.69□□□□□ -1.66
NUP54-203ENST00000504173 KRTAP2-4Q9BYR9 128 aa4.69□□□□□ -1.66
NUP54-203ENST00000504173 H7BZZ5 65 aa4.68□□□□□ -1.66
NUP54-203ENST00000504173 KRTAP19-4Q3LI73 84 aa4.68□□□□□ -1.66
NUP54-203ENST00000504173 MDN1Q9NU22 5596 aa4.67□□□□□ -1.66
NUP54-203ENST00000504173 CHKB-CPT1BH3BT56 60 aa4.67□□□□□ -1.66
NUP54-203ENST00000504173 H3BS24 57 aa4.66□□□□□ -1.66
NUP54-203ENST00000504173 GPR98Q8WXG9 6306 aa4.65□□□□□ -1.67
NUP54-203ENST00000504173 KRTAP4-2Q9BYR5 136 aa4.64□□□□□ -1.67
NUP54-203ENST00000504173 SPTSSBQ8NFR3 76 aa4.63□□□□□ -1.67
NUP54-203ENST00000504173 H0YAA0 97 aa4.61□□□□□ -1.67
NUP54-203ENST00000504173 COA5Q86WW8 74 aa4.6□□□□□ -1.67
NUP54-203ENST00000504173 ADM2Q7Z4H4 148 aa4.59□□□□□ -1.67
NUP54-203ENST00000504173 KRTAP5-9P26371 169 aa4.57□□□□□ -1.68
NUP54-203ENST00000504173 KRTAP4-11Q9BYQ6 195 aa4.57□□□□□ -1.68
NUP54-203ENST00000504173 ATP5EP56381 51 aaPredicted RBP4.56□□□□□ -1.68
NUP54-203ENST00000504173 CRIPTQ9P021 101 aa4.54□□□□□ -1.68
NUP54-203ENST00000504173 TMEM258P61165 79 aa4.53□□□□□ -1.68
NUP54-203ENST00000504173 P0C880 135 aa4.51□□□□□ -1.69
NUP54-203ENST00000504173 LCE5AQ5TCM9 118 aa4.51□□□□□ -1.69
NUP54-203ENST00000504173 SPRR2GQ9BYE4 73 aa4.5□□□□□ -1.69
NUP54-203ENST00000504173 KRTAP2-2Q9BYT5 123 aa4.5□□□□□ -1.69
NUP54-203ENST00000504173 KRTAP2-1Q9BYU5 128 aa4.5□□□□□ -1.69
NUP54-203ENST00000504173 R4GN34 69 aa4.46□□□□□ -1.7
NUP54-203ENST00000504173 PCP4P48539 62 aa4.45□□□□□ -1.7
NUP54-203ENST00000504173 M0QZ58 72 aa4.44□□□□□ -1.7
NUP54-203ENST00000504173 SEC61GP60059 68 aa4.44□□□□□ -1.7
NUP54-203ENST00000504173 KRTAP19-8Q3LI54 63 aa4.44□□□□□ -1.7
NUP54-203ENST00000504173 Q5VV11 94 aa4.43□□□□□ -1.7
NUP54-203ENST00000504173 SERP1Q9Y6X1 66 aa4.43□□□□□ -1.7
NUP54-203ENST00000504173 MT1BP07438 61 aa4.4□□□□□ -1.71
NUP54-203ENST00000504173 A0A1B0GU69 56 aa4.37□□□□□ -1.71
NUP54-203ENST00000504173 LINC01554Q52M75 96 aa4.37□□□□□ -1.71
NUP54-203ENST00000504173 A0A1B0GU33 70 aa4.32□□□□□ -1.72
NUP54-203ENST00000504173 PLAC4Q8WY50 150 aa4.32□□□□□ -1.72
NUP54-203ENST00000504173 PRR15LQ9BU68 103 aa4.32□□□□□ -1.72
NUP54-203ENST00000504173 A6NN06 94 aa4.31□□□□□ -1.72
NUP54-203ENST00000504173 KRTAP13-4Q3LI77 160 aa4.31□□□□□ -1.72
NUP54-203ENST00000504173 LINC01558Q9Y6Z2 57 aa4.31□□□□□ -1.72
NUP54-203ENST00000504173 SPRR2EP22531 72 aa4.3□□□□□ -1.72
NUP54-203ENST00000504173 SPRR2BP35325 72 aa4.3□□□□□ -1.72
NUP54-203ENST00000504173 SPRR2AP35326 72 aa4.3□□□□□ -1.72
NUP54-203ENST00000504173 SPATA8Q6RVD6 105 aa4.27□□□□□ -1.73
NUP54-203ENST00000504173 KRTAP10-5P60370 271 aa4.25□□□□□ -1.73
NUP54-203ENST00000504173 A0A0D9SG42 100 aa4.24□□□□□ -1.73
NUP54-203ENST00000504173 V9GYY9 64 aa4.24□□□□□ -1.73
NUP54-203ENST00000504173 SMIM26A0A096LP01 95 aa4.23□□□□□ -1.73
NUP54-203ENST00000504173 RPS28P62857 69 aaKnown RBP4.22□□□□□ -1.73
NUP54-203ENST00000504173 PRO2289Q9P1D8 64 aa4.21□□□□□ -1.74
NUP54-203ENST00000504173 Q1T7F1 81 aa4.2□□□□□ -1.74
NUP54-203ENST00000504173 MT1XP80297 61 aa4.19□□□□□ -1.74
NUP54-203ENST00000504173 LCE1AQ5T7P2 110 aa4.19□□□□□ -1.74
NUP54-203ENST00000504173 SPRR2FQ96RM1 72 aa4.19□□□□□ -1.74
NUP54-203ENST00000504173 A8MU10 97 aa4.17□□□□□ -1.74
NUP54-203ENST00000504173 UQCR11O14957 56 aa4.17□□□□□ -1.74
NUP54-203ENST00000504173 PSPHP1O15172 72 aa4.17□□□□□ -1.74
NUP54-203ENST00000504173 SPRR2DP22532 72 aa4.17□□□□□ -1.74
NUP54-203ENST00000504173 SPINT4Q6UDR6 99 aa4.16□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms