RNA–Protein interactions for RNA: ENST00000489261.1

ITSN1-231, Transcript of intersectin 1, human

TSL 1 (best)

Gene ITSN1, Length 1,108 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ITSN1-231	ENST00000489261	COX6B2	Q6YFQ2	88 aa		5.7	□□□□□ -1.5
ITSN1-231	ENST00000489261	PRO0628	Q9UI54	55 aa		5.67	□□□□□ -1.5
ITSN1-231	ENST00000489261	BRK1	Q8WUW1	75 aa		5.65	□□□□□ -1.5
ITSN1-231	ENST00000489261	KRTAP3-1	Q9BYR8	98 aa		5.65	□□□□□ -1.5
ITSN1-231	ENST00000489261	LPA	P08519	4548 aa		5.64	□□□□□ -1.51
ITSN1-231	ENST00000489261		A0A1B0GU69	56 aa		5.63	□□□□□ -1.51
ITSN1-231	ENST00000489261	SVIP	Q8NHG7	77 aa		5.63	□□□□□ -1.51
ITSN1-231	ENST00000489261	RNF213	Q63HN8	5207 aa		5.62	□□□□□ -1.51
ITSN1-231	ENST00000489261		A6NED7	52 aa		5.61	□□□□□ -1.51
ITSN1-231	ENST00000489261	SEC61G	P60059	68 aa		5.61	□□□□□ -1.51
ITSN1-231	ENST00000489261	SEC61B	P60468	96 aa	Known RBP	5.57	□□□□□ -1.52
ITSN1-231	ENST00000489261	CDC42SE1	Q9NRR8	79 aa		5.56	□□□□□ -1.52
ITSN1-231	ENST00000489261	LCE2B	O14633	110 aa		5.54	□□□□□ -1.52
ITSN1-231	ENST00000489261	RBM12B-AS1	Q9P1G2	102 aa		5.53	□□□□□ -1.52
ITSN1-231	ENST00000489261	UQCR11	O14957	56 aa		5.52	□□□□□ -1.53
ITSN1-231	ENST00000489261	H1FX-AS1	Q4G0G2	97 aa		5.52	□□□□□ -1.53
ITSN1-231	ENST00000489261	LCA10	Q71F78	164 aa		5.52	□□□□□ -1.53
ITSN1-231	ENST00000489261	SPATA8	Q6RVD6	105 aa		5.49	□□□□□ -1.53
ITSN1-231	ENST00000489261		S4R3F8	94 aa		5.49	□□□□□ -1.53
ITSN1-231	ENST00000489261	MIR22HG	Q0VDD5	57 aa		5.46	□□□□□ -1.54
ITSN1-231	ENST00000489261	MUC2	Q02817	5179 aa		5.45	□□□□□ -1.54
ITSN1-231	ENST00000489261		A0A1B0GU33	70 aa		5.42	□□□□□ -1.54
ITSN1-231	ENST00000489261		A8MU10	97 aa		5.39	□□□□□ -1.55
ITSN1-231	ENST00000489261	PMAIP1	Q13794	54 aa		5.39	□□□□□ -1.55
ITSN1-231	ENST00000489261	CSAG1	Q6PB30	78 aa		5.39	□□□□□ -1.55
ITSN1-231	ENST00000489261	MUC17	Q685J3	4493 aa		5.39	□□□□□ -1.55
ITSN1-231	ENST00000489261	LCE2A	Q5TA79	106 aa	Predicted RBP	5.35	□□□□□ -1.55
ITSN1-231	ENST00000489261		H0YAA0	97 aa		5.32	□□□□□ -1.56
ITSN1-231	ENST00000489261	KRTAP10-6	P60371	365 aa	Predicted RBP	5.32	□□□□□ -1.56
ITSN1-231	ENST00000489261	FAT4	Q6V0I7	4981 aa		5.31	□□□□□ -1.56
ITSN1-231	ENST00000489261		A6NN06	94 aa		5.31	□□□□□ -1.56
ITSN1-231	ENST00000489261	KRTAP4-1	Q9BYQ7	146 aa		5.31	□□□□□ -1.56
ITSN1-231	ENST00000489261	LOC100996750	A0A140TA64	210 aa		5.26	□□□□□ -1.57
ITSN1-231	ENST00000489261	ADM2	Q7Z4H4	148 aa		5.26	□□□□□ -1.57
ITSN1-231	ENST00000489261	KRTAP4-6	Q9BYQ5	205 aa		5.26	□□□□□ -1.57
ITSN1-231	ENST00000489261		K7ERS5	55 aa		5.25	□□□□□ -1.57
ITSN1-231	ENST00000489261		M0QZ58	72 aa		5.22	□□□□□ -1.57
ITSN1-231	ENST00000489261	KTN1-AS1	Q86SY8	53 aa		5.22	□□□□□ -1.57
ITSN1-231	ENST00000489261		P0C880	135 aa		5.21	□□□□□ -1.58
ITSN1-231	ENST00000489261	KRTAP19-2	Q3LHN2	52 aa		5.21	□□□□□ -1.58
ITSN1-231	ENST00000489261	LCE2C	Q5TA81	110 aa		5.18	□□□□□ -1.58
ITSN1-231	ENST00000489261	KRTAP9-2	Q9BYQ4	174 aa		5.17	□□□□□ -1.58
ITSN1-231	ENST00000489261	KRTAP13-4	Q3LI77	160 aa		5.14	□□□□□ -1.59
ITSN1-231	ENST00000489261	MT1H	P80294	61 aa		5.11	□□□□□ -1.59
ITSN1-231	ENST00000489261		A0A0D9SG42	100 aa		5.08	□□□□□ -1.6
ITSN1-231	ENST00000489261		R4GN34	69 aa		5.07	□□□□□ -1.6
ITSN1-231	ENST00000489261	CRIPT	Q9P021	101 aa		5.05	□□□□□ -1.6
ITSN1-231	ENST00000489261	LOR	P23490	312 aa	Predicted RBP	5.01	□□□□□ -1.61
ITSN1-231	ENST00000489261	KRTAP12-1	P59990	96 aa		5.01	□□□□□ -1.61
ITSN1-231	ENST00000489261	ROMO1	P60602	79 aa		5	□□□□□ -1.61
ITSN1-231	ENST00000489261	FLG	P20930	4061 aa	Predicted RBP	5	□□□□□ -1.61
ITSN1-231	ENST00000489261	KRTAP9-6	A0A140TA67	174 aa		4.99	□□□□□ -1.61
ITSN1-231	ENST00000489261	SPINT4	Q6UDR6	99 aa		4.99	□□□□□ -1.61
ITSN1-231	ENST00000489261	KRTAP12-2	P59991	146 aa		4.97	□□□□□ -1.61
ITSN1-231	ENST00000489261		M0R2T5	61 aa		4.94	□□□□□ -1.62
ITSN1-231	ENST00000489261	PRAC1	Q96KF2	57 aa		4.94	□□□□□ -1.62
ITSN1-231	ENST00000489261	LINC01554	Q52M75	96 aa		4.92	□□□□□ -1.62
ITSN1-231	ENST00000489261	FSIP2	Q5CZC0	6907 aa		4.89	□□□□□ -1.63
ITSN1-231	ENST00000489261	CRCT1	Q9UGL9	99 aa		4.88	□□□□□ -1.63
ITSN1-231	ENST00000489261	KRTAP25-1	Q3LHN0	102 aa		4.87	□□□□□ -1.63
ITSN1-231	ENST00000489261	KRTAP9-8	Q9BYQ0	159 aa		4.84	□□□□□ -1.63
ITSN1-231	ENST00000489261	SPRR2G	Q9BYE4	73 aa		4.81	□□□□□ -1.64
ITSN1-231	ENST00000489261	CAMK2N1	Q7Z7J9	78 aa		4.77	□□□□□ -1.65
ITSN1-231	ENST00000489261	MT2A	P02795	61 aa		4.76	□□□□□ -1.65
ITSN1-231	ENST00000489261	KRTAP10-10	P60014	251 aa		4.76	□□□□□ -1.65
ITSN1-231	ENST00000489261	PLAC4	Q8WY50	150 aa		4.74	□□□□□ -1.65
ITSN1-231	ENST00000489261	KRTAP4-8	Q9BYQ9	185 aa		4.74	□□□□□ -1.65
ITSN1-231	ENST00000489261	KRTAP19-1	Q8IUB9	90 aa		4.73	□□□□□ -1.65
ITSN1-231	ENST00000489261	C10orf95	Q9H7T3	257 aa		4.73	□□□□□ -1.65
ITSN1-231	ENST00000489261	MT1F	P04733	61 aa		4.72	□□□□□ -1.65
ITSN1-231	ENST00000489261	KRTAP9-3	Q9BYQ3	159 aa		4.68	□□□□□ -1.66
ITSN1-231	ENST00000489261	KRTAP19-8	Q3LI54	63 aa		4.67	□□□□□ -1.66
ITSN1-231	ENST00000489261	USH2A	O75445	5202 aa		4.65	□□□□□ -1.67
ITSN1-231	ENST00000489261	PP632	Q6XCG6	107 aa		4.64	□□□□□ -1.67
ITSN1-231	ENST00000489261	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	4.63	□□□□□ -1.67
ITSN1-231	ENST00000489261	SSPO	A2VEC9	5147 aa		4.61	□□□□□ -1.67
ITSN1-231	ENST00000489261	KRTAP23-1	A1A580	65 aa		4.61	□□□□□ -1.67
ITSN1-231	ENST00000489261	TNP1	P09430	55 aa		4.61	□□□□□ -1.67
ITSN1-231	ENST00000489261	MT1B	P07438	61 aa		4.53	□□□□□ -1.68
ITSN1-231	ENST00000489261	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	4.51	□□□□□ -1.69
ITSN1-231	ENST00000489261	KRTAP19-6	Q3LI70	58 aa		4.51	□□□□□ -1.69
ITSN1-231	ENST00000489261	KRTAP9-7	A8MTY7	169 aa		4.49	□□□□□ -1.69
ITSN1-231	ENST00000489261	KRTAP4-12	Q9BQ66	201 aa		4.48	□□□□□ -1.69
ITSN1-231	ENST00000489261	PRO2289	Q9P1D8	64 aa		4.45	□□□□□ -1.7
ITSN1-231	ENST00000489261	LCE3B	Q5TA77	95 aa		4.44	□□□□□ -1.7
ITSN1-231	ENST00000489261	KRTAP10-5	P60370	271 aa		4.42	□□□□□ -1.7
ITSN1-231	ENST00000489261	MT1X	P80297	61 aa		4.42	□□□□□ -1.7
ITSN1-231	ENST00000489261	MACF1	Q9UPN3	7388 aa	Known RBP	4.39	□□□□□ -1.71
ITSN1-231	ENST00000489261	KRTAP4-8	A0A0G2JLE6	195 aa		4.39	□□□□□ -1.71
ITSN1-231	ENST00000489261	KRTAP9-9	Q9BYP9	154 aa		4.39	□□□□□ -1.71
ITSN1-231	ENST00000489261	KRTAP9-4	Q9BYQ2	154 aa		4.39	□□□□□ -1.71
ITSN1-231	ENST00000489261	KRTAP15-1	Q3LI76	137 aa		4.35	□□□□□ -1.71
ITSN1-231	ENST00000489261	SYNE2	Q8WXH0	6885 aa	Known RBP	4.35	□□□□□ -1.71
ITSN1-231	ENST00000489261	LCE3A	Q5TA76	89 aa		4.29	□□□□□ -1.72
ITSN1-231	ENST00000489261	KRTAP8-1	Q8IUC2	63 aa		4.29	□□□□□ -1.72
ITSN1-231	ENST00000489261	KRTAP10-12	P60413	245 aa		4.27	□□□□□ -1.73
ITSN1-231	ENST00000489261	KRTAP6-3	Q3LI67	103 aa		4.26	□□□□□ -1.73
ITSN1-231	ENST00000489261	KRTAP4-7	Q9BYR0	210 aa		4.25	□□□□□ -1.73
ITSN1-231	ENST00000489261	KRTAP10-7	P60409	375 aa	Predicted RBP	4.23	□□□□□ -1.73
ITSN1-231	ENST00000489261	LCE1D	Q5T752	114 aa		4.19	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms