RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 LCE2DQ5TA82 110 aaPredicted RBP6.1□□□□□ -1.43
PTPRF-213ENST00000481019 CYSTM1Q9H1C7 97 aa6.1□□□□□ -1.43
PTPRF-213ENST00000481019 ACYP2P14621 99 aa6.08□□□□□ -1.44
PTPRF-213ENST00000481019 C4orf26Q17RF5 130 aa6.06□□□□□ -1.44
PTPRF-213ENST00000481019 DMAC1Q96GE9 116 aa6.04□□□□□ -1.44
PTPRF-213ENST00000481019 KRTAP9-8Q9BYQ0 159 aa6.04□□□□□ -1.44
PTPRF-213ENST00000481019 FSIP2Q5CZC0 6907 aa5.99□□□□□ -1.45
PTPRF-213ENST00000481019 USH2AO75445 5202 aa5.98□□□□□ -1.45
PTPRF-213ENST00000481019 SERP1Q9Y6X1 66 aa5.98□□□□□ -1.45
PTPRF-213ENST00000481019 CHKB-CPT1BH3BT56 60 aa5.97□□□□□ -1.45
PTPRF-213ENST00000481019 H1FX-AS1Q4G0G2 97 aa5.97□□□□□ -1.45
PTPRF-213ENST00000481019 MT2AP02795 61 aa5.96□□□□□ -1.46
PTPRF-213ENST00000481019 RPS28P62857 69 aaKnown RBP5.96□□□□□ -1.46
PTPRF-213ENST00000481019 SPTSSBQ8NFR3 76 aa5.96□□□□□ -1.46
PTPRF-213ENST00000481019 MT1FP04733 61 aa5.93□□□□□ -1.46
PTPRF-213ENST00000481019 COA5Q86WW8 74 aa5.93□□□□□ -1.46
PTPRF-213ENST00000481019 KRTAP3-1Q9BYR8 98 aa5.92□□□□□ -1.46
PTPRF-213ENST00000481019 SSPOA2VEC9 5147 aa5.91□□□□□ -1.46
PTPRF-213ENST00000481019 CRCT1Q9UGL9 99 aa5.89□□□□□ -1.47
PTPRF-213ENST00000481019 S4R3F8 94 aa5.88□□□□□ -1.47
PTPRF-213ENST00000481019 KRTAP10-10P60014 251 aa5.84□□□□□ -1.47
PTPRF-213ENST00000481019 KRTAP9-3Q9BYQ3 159 aa5.84□□□□□ -1.47
PTPRF-213ENST00000481019 SMIM26A0A096LP01 95 aa5.82□□□□□ -1.48
PTPRF-213ENST00000481019 CSAG1Q6PB30 78 aa5.82□□□□□ -1.48
PTPRF-213ENST00000481019 V9GYY9 64 aa5.82□□□□□ -1.48
PTPRF-213ENST00000481019 LCE2BO14633 110 aa5.81□□□□□ -1.48
PTPRF-213ENST00000481019 LCA10Q71F78 164 aa5.8□□□□□ -1.48
PTPRF-213ENST00000481019 SEC61GP60059 68 aa5.77□□□□□ -1.49
PTPRF-213ENST00000481019 PRR15LQ9BU68 103 aa5.73□□□□□ -1.49
PTPRF-213ENST00000481019 Q1T7F1 81 aa5.72□□□□□ -1.49
PTPRF-213ENST00000481019 KRTAP3-3Q9BYR6 98 aa5.72□□□□□ -1.49
PTPRF-213ENST00000481019 FCGBPQ9Y6R7 5405 aaPredicted RBP5.71□□□□□ -1.5
PTPRF-213ENST00000481019 LINC01558Q9Y6Z2 57 aa5.7□□□□□ -1.5
PTPRF-213ENST00000481019 A0A1B0GU69 56 aa5.67□□□□□ -1.5
PTPRF-213ENST00000481019 H0YAA0 97 aa5.67□□□□□ -1.5
PTPRF-213ENST00000481019 KRTAP19-1Q8IUB9 90 aa5.63□□□□□ -1.51
PTPRF-213ENST00000481019 ADM2Q7Z4H4 148 aa5.58□□□□□ -1.52
PTPRF-213ENST00000481019 PSPHP1O15172 72 aa5.55□□□□□ -1.52
PTPRF-213ENST00000481019 KRTAP19-6Q3LI70 58 aa5.53□□□□□ -1.52
PTPRF-213ENST00000481019 A0A1B0GU33 70 aa5.52□□□□□ -1.53
PTPRF-213ENST00000481019 UQCR11O14957 56 aa5.52□□□□□ -1.53
PTPRF-213ENST00000481019 CRIPTQ9P021 101 aa5.52□□□□□ -1.53
PTPRF-213ENST00000481019 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.5□□□□□ -1.53
PTPRF-213ENST00000481019 Q5VV11 94 aa5.5□□□□□ -1.53
PTPRF-213ENST00000481019 KRTAP3-2Q9BYR7 98 aa5.5□□□□□ -1.53
PTPRF-213ENST00000481019 M0QZ58 72 aa5.49□□□□□ -1.53
PTPRF-213ENST00000481019 MT1BP07438 61 aa5.48□□□□□ -1.53
PTPRF-213ENST00000481019 SPRR2GQ9BYE4 73 aa5.48□□□□□ -1.53
PTPRF-213ENST00000481019 A6NED7 52 aa5.46□□□□□ -1.54
PTPRF-213ENST00000481019 P0C880 135 aa5.46□□□□□ -1.54
PTPRF-213ENST00000481019 KRTAP19-8Q3LI54 63 aa5.45□□□□□ -1.54
PTPRF-213ENST00000481019 R4GN34 69 aa5.45□□□□□ -1.54
PTPRF-213ENST00000481019 MACF1Q9UPN3 7388 aaKnown RBP5.44□□□□□ -1.54
PTPRF-213ENST00000481019 KRTAP9-7A8MTY7 169 aa5.43□□□□□ -1.54
PTPRF-213ENST00000481019 MIR22HGQ0VDD5 57 aa5.4□□□□□ -1.54
PTPRF-213ENST00000481019 SYNE2Q8WXH0 6885 aaKnown RBP5.37□□□□□ -1.55
PTPRF-213ENST00000481019 SPATA8Q6RVD6 105 aa5.37□□□□□ -1.55
PTPRF-213ENST00000481019 CDC42SE1Q9NRR8 79 aa5.34□□□□□ -1.55
PTPRF-213ENST00000481019 K7ERS5 55 aa5.31□□□□□ -1.56
PTPRF-213ENST00000481019 KRTAP10-5P60370 271 aa5.29□□□□□ -1.56
PTPRF-213ENST00000481019 BRK1Q8WUW1 75 aa5.29□□□□□ -1.56
PTPRF-213ENST00000481019 A6NN06 94 aa5.28□□□□□ -1.56
PTPRF-213ENST00000481019 KRTAP13-4Q3LI77 160 aa5.27□□□□□ -1.57
PTPRF-213ENST00000481019 LINC01554Q52M75 96 aa5.27□□□□□ -1.57
PTPRF-213ENST00000481019 A0A0D9SG42 100 aa5.25□□□□□ -1.57
PTPRF-213ENST00000481019 A8MU10 97 aa5.21□□□□□ -1.58
PTPRF-213ENST00000481019 PLAC4Q8WY50 150 aa5.21□□□□□ -1.58
PTPRF-213ENST00000481019 SPINT4Q6UDR6 99 aa5.19□□□□□ -1.58
PTPRF-213ENST00000481019 MT1XP80297 61 aa5.16□□□□□ -1.58
PTPRF-213ENST00000481019 KRTAP6-3Q3LI67 103 aa5.16□□□□□ -1.58
PTPRF-213ENST00000481019 PRO0628Q9UI54 55 aa5.16□□□□□ -1.58
PTPRF-213ENST00000481019 KMT2DO14686 5537 aa5.15□□□□□ -1.58
PTPRF-213ENST00000481019 MUC12Q9UKN1 5478 aa5.14□□□□□ -1.59
PTPRF-213ENST00000481019 KRTAP12-1P59990 96 aa5.14□□□□□ -1.59
PTPRF-213ENST00000481019 SVIPQ8NHG7 77 aa5.12□□□□□ -1.59
PTPRF-213ENST00000481019 CAMK2N1Q7Z7J9 78 aa5.11□□□□□ -1.59
PTPRF-213ENST00000481019 KRTAP12-2P59991 146 aa5.09□□□□□ -1.59
PTPRF-213ENST00000481019 NEBP20929 6669 aa5.07□□□□□ -1.6
PTPRF-213ENST00000481019 PMAIP1Q13794 54 aa5.05□□□□□ -1.6
PTPRF-213ENST00000481019 MDN1Q9NU22 5596 aa5.05□□□□□ -1.6
PTPRF-213ENST00000481019 PRO2289Q9P1D8 64 aa5.02□□□□□ -1.61
PTPRF-213ENST00000481019 KRTAP5-9P26371 169 aa4.98□□□□□ -1.61
PTPRF-213ENST00000481019 ROMO1P60602 79 aa4.96□□□□□ -1.62
PTPRF-213ENST00000481019 KRTAP10-7P60409 375 aaPredicted RBP4.94□□□□□ -1.62
PTPRF-213ENST00000481019 KRTAP4-8A0A0G2JLE6 195 aa4.92□□□□□ -1.62
PTPRF-213ENST00000481019 KRTAP4-8Q9BYQ9 185 aa4.92□□□□□ -1.62
PTPRF-213ENST00000481019 KRTAP10-12P60413 245 aa4.87□□□□□ -1.63
PTPRF-213ENST00000481019 KRTAP8-1Q8IUC2 63 aa4.87□□□□□ -1.63
PTPRF-213ENST00000481019 TNP1P09430 55 aa4.86□□□□□ -1.63
PTPRF-213ENST00000481019 SPRR2FQ96RM1 72 aa4.86□□□□□ -1.63
PTPRF-213ENST00000481019 KRTAP25-1Q3LHN0 102 aa4.85□□□□□ -1.63
PTPRF-213ENST00000481019 C10orf95Q9H7T3 257 aa4.85□□□□□ -1.63
PTPRF-213ENST00000481019 KTN1-AS1Q86SY8 53 aa4.79□□□□□ -1.64
PTPRF-213ENST00000481019 SPRR2EP22531 72 aa4.76□□□□□ -1.65
PTPRF-213ENST00000481019 SPRR2BP35325 72 aa4.76□□□□□ -1.65
PTPRF-213ENST00000481019 SPRR2AP35326 72 aa4.76□□□□□ -1.65
PTPRF-213ENST00000481019 LCE1AQ5T7P2 110 aa4.74□□□□□ -1.65
PTPRF-213ENST00000481019 KRTAP23-1A1A580 65 aa4.73□□□□□ -1.65
PTPRF-213ENST00000481019 PP632Q6XCG6 107 aa4.72□□□□□ -1.65
PTPRF-213ENST00000481019 KRTAP20-1Q3LI63 56 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms