RNA–Protein interactions for RNA: ENST00000479080.1

CHD3-210, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 519 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-210ENST00000479080 NDUFC1O43677 76 aa6.36□□□□□ -1.39
CHD3-210ENST00000479080 KRTAP3-3Q9BYR6 98 aa6.36□□□□□ -1.39
CHD3-210ENST00000479080 LCA10Q71F78 164 aa6.34□□□□□ -1.39
CHD3-210ENST00000479080 PCP4P48539 62 aa6.33□□□□□ -1.4
CHD3-210ENST00000479080 S4R3F8 94 aa6.32□□□□□ -1.4
CHD3-210ENST00000479080 KRTAP10-6P60371 365 aaPredicted RBP6.28□□□□□ -1.4
CHD3-210ENST00000479080 LORP23490 312 aaPredicted RBP6.27□□□□□ -1.41
CHD3-210ENST00000479080 M0R2T5 61 aa6.25□□□□□ -1.41
CHD3-210ENST00000479080 ACYP2P14621 99 aa6.25□□□□□ -1.41
CHD3-210ENST00000479080 LCE2DQ5TA82 110 aaPredicted RBP6.25□□□□□ -1.41
CHD3-210ENST00000479080 KRTAP9-8Q9BYQ0 159 aa6.23□□□□□ -1.41
CHD3-210ENST00000479080 TMEM258P61165 79 aa6.22□□□□□ -1.41
CHD3-210ENST00000479080 COA5Q86WW8 74 aa6.21□□□□□ -1.42
CHD3-210ENST00000479080 MT2AP02795 61 aa6.19□□□□□ -1.42
CHD3-210ENST00000479080 ATP5EP56381 51 aaPredicted RBP6.17□□□□□ -1.42
CHD3-210ENST00000479080 CSAG1Q6PB30 78 aa6.17□□□□□ -1.42
CHD3-210ENST00000479080 KRTAP9-7A8MTY7 169 aa6.16□□□□□ -1.42
CHD3-210ENST00000479080 MT1FP04733 61 aa6.15□□□□□ -1.42
CHD3-210ENST00000479080 KRTAP3-2Q9BYR7 98 aa6.15□□□□□ -1.42
CHD3-210ENST00000479080 CHKB-CPT1BH3BT56 60 aa6.12□□□□□ -1.43
CHD3-210ENST00000479080 H0YAA0 97 aa6.06□□□□□ -1.44
CHD3-210ENST00000479080 SPTSSBQ8NFR3 76 aa6.03□□□□□ -1.44
CHD3-210ENST00000479080 SERP1Q9Y6X1 66 aa6.03□□□□□ -1.44
CHD3-210ENST00000479080 KRTAP10-10P60014 251 aa6.02□□□□□ -1.45
CHD3-210ENST00000479080 KRTAP9-3Q9BYQ3 159 aa6.02□□□□□ -1.45
CHD3-210ENST00000479080 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.01□□□□□ -1.45
CHD3-210ENST00000479080 P0C880 135 aa6.01□□□□□ -1.45
CHD3-210ENST00000479080 ADM2Q7Z4H4 148 aa6.01□□□□□ -1.45
CHD3-210ENST00000479080 KRTAP19-1Q8IUB9 90 aa5.94□□□□□ -1.46
CHD3-210ENST00000479080 USH2AO75445 5202 aa5.93□□□□□ -1.46
CHD3-210ENST00000479080 LCE2BO14633 110 aa5.91□□□□□ -1.46
CHD3-210ENST00000479080 LINC01558Q9Y6Z2 57 aa5.89□□□□□ -1.47
CHD3-210ENST00000479080 RPS28P62857 69 aaKnown RBP5.88□□□□□ -1.47
CHD3-210ENST00000479080 SPRR2GQ9BYE4 73 aa5.88□□□□□ -1.47
CHD3-210ENST00000479080 SVIPQ8NHG7 77 aa5.86□□□□□ -1.47
CHD3-210ENST00000479080 KRTAP13-4Q3LI77 160 aa5.84□□□□□ -1.47
CHD3-210ENST00000479080 CRIPTQ9P021 101 aa5.84□□□□□ -1.47
CHD3-210ENST00000479080 SMIM26A0A096LP01 95 aa5.82□□□□□ -1.48
CHD3-210ENST00000479080 A0A1B0GU69 56 aa5.82□□□□□ -1.48
CHD3-210ENST00000479080 SSPOA2VEC9 5147 aa5.81□□□□□ -1.48
CHD3-210ENST00000479080 KRTAP19-8Q3LI54 63 aa5.8□□□□□ -1.48
CHD3-210ENST00000479080 M0QZ58 72 aa5.79□□□□□ -1.48
CHD3-210ENST00000479080 Q1T7F1 81 aa5.79□□□□□ -1.48
CHD3-210ENST00000479080 MT1BP07438 61 aa5.78□□□□□ -1.48
CHD3-210ENST00000479080 SEC61GP60059 68 aa5.78□□□□□ -1.48
CHD3-210ENST00000479080 R4GN34 69 aa5.77□□□□□ -1.49
CHD3-210ENST00000479080 PRR15LQ9BU68 103 aa5.75□□□□□ -1.49
CHD3-210ENST00000479080 A0A1B0GU33 70 aa5.74□□□□□ -1.49
CHD3-210ENST00000479080 SPATA8Q6RVD6 105 aa5.72□□□□□ -1.49
CHD3-210ENST00000479080 SYNE2Q8WXH0 6885 aaKnown RBP5.72□□□□□ -1.49
CHD3-210ENST00000479080 PSPHP1O15172 72 aa5.71□□□□□ -1.5
CHD3-210ENST00000479080 Q5VV11 94 aa5.71□□□□□ -1.5
CHD3-210ENST00000479080 V9GYY9 64 aa5.71□□□□□ -1.5
CHD3-210ENST00000479080 LINC01554Q52M75 96 aa5.67□□□□□ -1.5
CHD3-210ENST00000479080 MACF1Q9UPN3 7388 aaKnown RBP5.64□□□□□ -1.51
CHD3-210ENST00000479080 FCGBPQ9Y6R7 5405 aaPredicted RBP5.63□□□□□ -1.51
CHD3-210ENST00000479080 A8MU10 97 aa5.63□□□□□ -1.51
CHD3-210ENST00000479080 A0A0D9SG42 100 aa5.6□□□□□ -1.51
CHD3-210ENST00000479080 A6NN06 94 aa5.59□□□□□ -1.51
CHD3-210ENST00000479080 UQCR11O14957 56 aa5.58□□□□□ -1.52
CHD3-210ENST00000479080 KRTAP19-6Q3LI70 58 aa5.58□□□□□ -1.52
CHD3-210ENST00000479080 KRTAP12-1P59990 96 aa5.56□□□□□ -1.52
CHD3-210ENST00000479080 KRTAP12-2P59991 146 aa5.53□□□□□ -1.52
CHD3-210ENST00000479080 MIR22HGQ0VDD5 57 aa5.52□□□□□ -1.53
CHD3-210ENST00000479080 MT1XP80297 61 aa5.51□□□□□ -1.53
CHD3-210ENST00000479080 KRTAP10-5P60370 271 aa5.5□□□□□ -1.53
CHD3-210ENST00000479080 PLAC4Q8WY50 150 aa5.5□□□□□ -1.53
CHD3-210ENST00000479080 A6NED7 52 aa5.48□□□□□ -1.53
CHD3-210ENST00000479080 SPINT4Q6UDR6 99 aa5.46□□□□□ -1.54
CHD3-210ENST00000479080 NEBP20929 6669 aa5.45□□□□□ -1.54
CHD3-210ENST00000479080 CDC42SE1Q9NRR8 79 aa5.39□□□□□ -1.55
CHD3-210ENST00000479080 KRTAP6-3Q3LI67 103 aa5.36□□□□□ -1.55
CHD3-210ENST00000479080 CAMK2N1Q7Z7J9 78 aa5.35□□□□□ -1.55
CHD3-210ENST00000479080 H3BS24 57 aa5.34□□□□□ -1.55
CHD3-210ENST00000479080 KRTAP20-1Q3LI63 56 aa5.33□□□□□ -1.56
CHD3-210ENST00000479080 PRO2289Q9P1D8 64 aa5.31□□□□□ -1.56
CHD3-210ENST00000479080 C10orf95Q9H7T3 257 aa5.3□□□□□ -1.56
CHD3-210ENST00000479080 KRTAP10-7P60409 375 aaPredicted RBP5.28□□□□□ -1.56
CHD3-210ENST00000479080 BRK1Q8WUW1 75 aa5.24□□□□□ -1.57
CHD3-210ENST00000479080 KMT2DO14686 5537 aa5.22□□□□□ -1.57
CHD3-210ENST00000479080 K7ERS5 55 aa5.21□□□□□ -1.58
CHD3-210ENST00000479080 KRTAP10-12P60413 245 aa5.21□□□□□ -1.58
CHD3-210ENST00000479080 MUC12Q9UKN1 5478 aa5.18□□□□□ -1.58
CHD3-210ENST00000479080 KRTAP4-8A0A0G2JLE6 195 aa5.15□□□□□ -1.59
CHD3-210ENST00000479080 KRTAP4-8Q9BYQ9 185 aa5.15□□□□□ -1.59
CHD3-210ENST00000479080 TNP1P09430 55 aa5.06□□□□□ -1.6
CHD3-210ENST00000479080 ROMO1P60602 79 aa5.06□□□□□ -1.6
CHD3-210ENST00000479080 KRTAP25-1Q3LHN0 102 aa5.02□□□□□ -1.61
CHD3-210ENST00000479080 LCE3AQ5TA76 89 aa5.01□□□□□ -1.61
CHD3-210ENST00000479080 GPR98Q8WXG9 6306 aa5□□□□□ -1.61
CHD3-210ENST00000479080 KRTAP2-3P0C7H8 128 aa4.99□□□□□ -1.61
CHD3-210ENST00000479080 KRTAP8-1Q8IUC2 63 aa4.99□□□□□ -1.61
CHD3-210ENST00000479080 KRTAP2-4Q9BYR9 128 aa4.99□□□□□ -1.61
CHD3-210ENST00000479080 PRO0628Q9UI54 55 aa4.99□□□□□ -1.61
CHD3-210ENST00000479080 KRTAP5-9P26371 169 aa4.96□□□□□ -1.62
CHD3-210ENST00000479080 MDN1Q9NU22 5596 aa4.95□□□□□ -1.62
CHD3-210ENST00000479080 KRTAP19-7Q3SYF9 63 aa4.94□□□□□ -1.62
CHD3-210ENST00000479080 PMAIP1Q13794 54 aa4.91□□□□□ -1.62
CHD3-210ENST00000479080 KRTAP19-5Q3LI72 72 aa4.89□□□□□ -1.63
CHD3-210ENST00000479080 SPRR2FQ96RM1 72 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 106.7 ms