RNA–Protein interactions for RNA: ENST00000472959.5

TOP3A-204, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 3

Gene TOP3A, Length 913 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-204ENST00000472959 A8MUN3 132 aa9.86□□□□□ -0.83
TOP3A-204ENST00000472959 LCA10Q71F78 164 aa9.86□□□□□ -0.83
TOP3A-204ENST00000472959 CSAG1Q6PB30 78 aa9.85□□□□□ -0.83
TOP3A-204ENST00000472959 KRTAP9-3Q9BYQ3 159 aa9.76□□□□□ -0.85
TOP3A-204ENST00000472959 SERP2Q8N6R1 65 aa9.72□□□□□ -0.85
TOP3A-204ENST00000472959 NDUFC1O43677 76 aa9.7□□□□□ -0.86
TOP3A-204ENST00000472959 DMAC1Q96GE9 116 aa9.68□□□□□ -0.86
TOP3A-204ENST00000472959 SNURFQ9Y675 71 aa9.63□□□□□ -0.87
TOP3A-204ENST00000472959 LCE2BO14633 110 aa9.6□□□□□ -0.87
TOP3A-204ENST00000472959 C20orf197Q8N268 126 aa9.6□□□□□ -0.87
TOP3A-204ENST00000472959 ACYP2P14621 99 aa9.54□□□□□ -0.88
TOP3A-204ENST00000472959 KRTAP9-7A8MTY7 169 aa9.53□□□□□ -0.88
TOP3A-204ENST00000472959 H0YAA0 97 aa9.52□□□□□ -0.89
TOP3A-204ENST00000472959 COX7CP15954 63 aa9.51□□□□□ -0.89
TOP3A-204ENST00000472959 USH2AO75445 5202 aa9.5□□□□□ -0.89
TOP3A-204ENST00000472959 SPANXA2-OT1Q8N9U9 137 aa9.5□□□□□ -0.89
TOP3A-204ENST00000472959 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.48□□□□□ -0.89
TOP3A-204ENST00000472959 CRIPTQ9P021 101 aa9.43□□□□□ -0.9
TOP3A-204ENST00000472959 KRTAP19-1Q8IUB9 90 aa9.42□□□□□ -0.9
TOP3A-204ENST00000472959 ADM2Q7Z4H4 148 aa9.39□□□□□ -0.91
TOP3A-204ENST00000472959 SPRR2GQ9BYE4 73 aa9.39□□□□□ -0.91
TOP3A-204ENST00000472959 ANAPC13Q9BS18 74 aa9.38□□□□□ -0.91
TOP3A-204ENST00000472959 SPTSSBQ8NFR3 76 aa9.37□□□□□ -0.91
TOP3A-204ENST00000472959 CHKB-CPT1BH3BT56 60 aa9.36□□□□□ -0.91
TOP3A-204ENST00000472959 SSPOA2VEC9 5147 aa9.32□□□□□ -0.92
TOP3A-204ENST00000472959 H7BZZ5 65 aa9.27□□□□□ -0.93
TOP3A-204ENST00000472959 KRTAP19-8Q3LI54 63 aa9.26□□□□□ -0.93
TOP3A-204ENST00000472959 CYSTM1Q9H1C7 97 aa9.25□□□□□ -0.93
TOP3A-204ENST00000472959 KRTAP19-6Q3LI70 58 aa9.24□□□□□ -0.93
TOP3A-204ENST00000472959 Q5VV11 94 aa9.24□□□□□ -0.93
TOP3A-204ENST00000472959 P0C880 135 aa9.21□□□□□ -0.94
TOP3A-204ENST00000472959 MT1BP07438 61 aa9.18□□□□□ -0.94
TOP3A-204ENST00000472959 COA5Q86WW8 74 aa9.18□□□□□ -0.94
TOP3A-204ENST00000472959 FCGBPQ9Y6R7 5405 aaPredicted RBP9.16□□□□□ -0.94
TOP3A-204ENST00000472959 CCDC179H3BU77 68 aa9.15□□□□□ -0.94
TOP3A-204ENST00000472959 R4GN34 69 aa9.13□□□□□ -0.95
TOP3A-204ENST00000472959 M0QZ58 72 aa9.07□□□□□ -0.96
TOP3A-204ENST00000472959 ATP5EP56381 51 aaPredicted RBP8.98□□□□□ -0.97
TOP3A-204ENST00000472959 MACF1Q9UPN3 7388 aaKnown RBP8.96□□□□□ -0.98
TOP3A-204ENST00000472959 SYNE2Q8WXH0 6885 aaKnown RBP8.95□□□□□ -0.98
TOP3A-204ENST00000472959 A6NN06 94 aa8.95□□□□□ -0.98
TOP3A-204ENST00000472959 SEC61GP60059 68 aa8.92□□□□□ -0.98
TOP3A-204ENST00000472959 PLAC4Q8WY50 150 aa8.92□□□□□ -0.98
TOP3A-204ENST00000472959 KRTAP10-5P60370 271 aa8.91□□□□□ -0.98
TOP3A-204ENST00000472959 LINC01554Q52M75 96 aa8.9□□□□□ -0.98
TOP3A-204ENST00000472959 SERP1Q9Y6X1 66 aa8.89□□□□□ -0.99
TOP3A-204ENST00000472959 TMEM258P61165 79 aa8.87□□□□□ -0.99
TOP3A-204ENST00000472959 PRO2289Q9P1D8 64 aa8.77□□□□□ -1.01
TOP3A-204ENST00000472959 KRTAP13-4Q3LI77 160 aa8.74□□□□□ -1.01
TOP3A-204ENST00000472959 A0A1B0GU69 56 aa8.72□□□□□ -1.01
TOP3A-204ENST00000472959 KRTAP6-3Q3LI67 103 aa8.72□□□□□ -1.01
TOP3A-204ENST00000472959 A0A1B0GU33 70 aa8.71□□□□□ -1.02
TOP3A-204ENST00000472959 MT1XP80297 61 aa8.71□□□□□ -1.02
TOP3A-204ENST00000472959 PRR15LQ9BU68 103 aa8.6□□□□□ -1.03
TOP3A-204ENST00000472959 SPATA8Q6RVD6 105 aa8.59□□□□□ -1.03
TOP3A-204ENST00000472959 LINC01558Q9Y6Z2 57 aa8.57□□□□□ -1.04
TOP3A-204ENST00000472959 A0A0D9SG42 100 aa8.54□□□□□ -1.04
TOP3A-204ENST00000472959 SMIM26A0A096LP01 95 aa8.48□□□□□ -1.05
TOP3A-204ENST00000472959 CAMK2N1Q7Z7J9 78 aa8.47□□□□□ -1.05
TOP3A-204ENST00000472959 PCP4P48539 62 aa8.46□□□□□ -1.06
TOP3A-204ENST00000472959 KRTAP12-2P59991 146 aa8.46□□□□□ -1.06
TOP3A-204ENST00000472959 NEBP20929 6669 aa8.45□□□□□ -1.06
TOP3A-204ENST00000472959 SPINT4Q6UDR6 99 aa8.4□□□□□ -1.06
TOP3A-204ENST00000472959 KRTAP12-1P59990 96 aa8.39□□□□□ -1.07
TOP3A-204ENST00000472959 V9GYY9 64 aa8.35□□□□□ -1.07
TOP3A-204ENST00000472959 A8MU10 97 aa8.34□□□□□ -1.07
TOP3A-204ENST00000472959 MUC12Q9UKN1 5478 aa8.33□□□□□ -1.08
TOP3A-204ENST00000472959 UQCR11O14957 56 aa8.31□□□□□ -1.08
TOP3A-204ENST00000472959 KRTAP10-7P60409 375 aaPredicted RBP8.3□□□□□ -1.08
TOP3A-204ENST00000472959 KRTAP20-1Q3LI63 56 aa8.3□□□□□ -1.08
TOP3A-204ENST00000472959 KRTAP5-9P26371 169 aa8.29□□□□□ -1.08
TOP3A-204ENST00000472959 KRTAP10-12P60413 245 aa8.29□□□□□ -1.08
TOP3A-204ENST00000472959 Q1T7F1 81 aa8.28□□□□□ -1.08
TOP3A-204ENST00000472959 RPS28P62857 69 aaKnown RBP8.23□□□□□ -1.09
TOP3A-204ENST00000472959 KRTAP8-1Q8IUC2 63 aa8.23□□□□□ -1.09
TOP3A-204ENST00000472959 KMT2DO14686 5537 aa8.21□□□□□ -1.09
TOP3A-204ENST00000472959 KRTAP4-8A0A0G2JLE6 195 aa8.19□□□□□ -1.1
TOP3A-204ENST00000472959 KRTAP4-8Q9BYQ9 185 aa8.19□□□□□ -1.1
TOP3A-204ENST00000472959 PSPHP1O15172 72 aa8.18□□□□□ -1.1
TOP3A-204ENST00000472959 MIR22HGQ0VDD5 57 aa8.14□□□□□ -1.11
TOP3A-204ENST00000472959 SPRR2FQ96RM1 72 aa8.12□□□□□ -1.11
TOP3A-204ENST00000472959 MDN1Q9NU22 5596 aa8.04□□□□□ -1.12
TOP3A-204ENST00000472959 KRTAP2-3P0C7H8 128 aa7.98□□□□□ -1.13
TOP3A-204ENST00000472959 KRTAP2-4Q9BYR9 128 aa7.98□□□□□ -1.13
TOP3A-204ENST00000472959 C10orf95Q9H7T3 257 aa7.98□□□□□ -1.13
TOP3A-204ENST00000472959 A6NED7 52 aa7.95□□□□□ -1.14
TOP3A-204ENST00000472959 K7ERS5 55 aa7.95□□□□□ -1.14
TOP3A-204ENST00000472959 TNP1P09430 55 aa7.92□□□□□ -1.14
TOP3A-204ENST00000472959 SPRR2EP22531 72 aa7.91□□□□□ -1.14
TOP3A-204ENST00000472959 SPRR2BP35325 72 aa7.91□□□□□ -1.14
TOP3A-204ENST00000472959 SPRR2AP35326 72 aa7.91□□□□□ -1.14
TOP3A-204ENST00000472959 LCE1AQ5T7P2 110 aa7.87□□□□□ -1.15
TOP3A-204ENST00000472959 KRTAP19-7Q3SYF9 63 aa7.78□□□□□ -1.16
TOP3A-204ENST00000472959 MT1EP04732 61 aa7.7□□□□□ -1.18
TOP3A-204ENST00000472959 LCE3AQ5TA76 89 aa7.7□□□□□ -1.18
TOP3A-204ENST00000472959 KRTAP2-2Q9BYT5 123 aa7.7□□□□□ -1.18
TOP3A-204ENST00000472959 KRTAP2-1Q9BYU5 128 aa7.7□□□□□ -1.18
TOP3A-204ENST00000472959 KRTAP19-5Q3LI72 72 aa7.69□□□□□ -1.18
TOP3A-204ENST00000472959 KRTAP25-1Q3LHN0 102 aa7.68□□□□□ -1.18
TOP3A-204ENST00000472959 CDC42SE1Q9NRR8 79 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms