RNA–Protein interactions for RNA: ENST00000472815.5

HIF3A-206, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 2 BASIC

Gene HIF3A, Length 1,709 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-206ENST00000472815 S4R3F8 94 aa7.35□□□□□ -1.23
HIF3A-206ENST00000472815 KRTAP4-1Q9BYQ7 146 aa7.33□□□□□ -1.24
HIF3A-206ENST00000472815 LINC01558Q9Y6Z2 57 aa7.32□□□□□ -1.24
HIF3A-206ENST00000472815 PRR15LQ9BU68 103 aa7.29□□□□□ -1.24
HIF3A-206ENST00000472815 LCA10Q71F78 164 aa7.28□□□□□ -1.24
HIF3A-206ENST00000472815 RNF213Q63HN8 5207 aa7.27□□□□□ -1.25
HIF3A-206ENST00000472815 SEC61GP60059 68 aa7.27□□□□□ -1.25
HIF3A-206ENST00000472815 A0A1B0GU69 56 aa7.24□□□□□ -1.25
HIF3A-206ENST00000472815 PSPHP1O15172 72 aa7.24□□□□□ -1.25
HIF3A-206ENST00000472815 MUC2Q02817 5179 aa7.24□□□□□ -1.25
HIF3A-206ENST00000472815 CSAG1Q6PB30 78 aa7.21□□□□□ -1.26
HIF3A-206ENST00000472815 KRTAP3-3Q9BYR6 98 aa7.21□□□□□ -1.26
HIF3A-206ENST00000472815 Q5VV11 94 aa7.16□□□□□ -1.26
HIF3A-206ENST00000472815 KRTAP19-2Q3LHN2 52 aa7.14□□□□□ -1.27
HIF3A-206ENST00000472815 A6NED7 52 aa7.08□□□□□ -1.28
HIF3A-206ENST00000472815 PRO0628Q9UI54 55 aa7.08□□□□□ -1.28
HIF3A-206ENST00000472815 H0YAA0 97 aa7.04□□□□□ -1.28
HIF3A-206ENST00000472815 UQCR11O14957 56 aa7.04□□□□□ -1.28
HIF3A-206ENST00000472815 FAT4Q6V0I7 4981 aa7.03□□□□□ -1.28
HIF3A-206ENST00000472815 BRK1Q8WUW1 75 aa7.01□□□□□ -1.29
HIF3A-206ENST00000472815 FLGP20930 4061 aaPredicted RBP7.01□□□□□ -1.29
HIF3A-206ENST00000472815 A0A1B0GU33 70 aa7.01□□□□□ -1.29
HIF3A-206ENST00000472815 ADM2Q7Z4H4 148 aa7□□□□□ -1.29
HIF3A-206ENST00000472815 LCE2CQ5TA81 110 aa6.99□□□□□ -1.29
HIF3A-206ENST00000472815 KRTAP10-6P60371 365 aaPredicted RBP6.96□□□□□ -1.3
HIF3A-206ENST00000472815 KRTAP3-2Q9BYR7 98 aa6.95□□□□□ -1.3
HIF3A-206ENST00000472815 CDC42SE1Q9NRR8 79 aa6.95□□□□□ -1.3
HIF3A-206ENST00000472815 MIR22HGQ0VDD5 57 aa6.94□□□□□ -1.3
HIF3A-206ENST00000472815 M0R2T5 61 aa6.93□□□□□ -1.3
HIF3A-206ENST00000472815 P0C880 135 aa6.91□□□□□ -1.3
HIF3A-206ENST00000472815 SPATA8Q6RVD6 105 aa6.9□□□□□ -1.3
HIF3A-206ENST00000472815 MT1HP80294 61 aa6.89□□□□□ -1.31
HIF3A-206ENST00000472815 LCE2AQ5TA79 106 aaPredicted RBP6.89□□□□□ -1.31
HIF3A-206ENST00000472815 M0QZ58 72 aa6.84□□□□□ -1.31
HIF3A-206ENST00000472815 R4GN34 69 aa6.81□□□□□ -1.32
HIF3A-206ENST00000472815 A8MU10 97 aa6.77□□□□□ -1.33
HIF3A-206ENST00000472815 CRIPTQ9P021 101 aa6.77□□□□□ -1.33
HIF3A-206ENST00000472815 KRTAP13-4Q3LI77 160 aa6.74□□□□□ -1.33
HIF3A-206ENST00000472815 K7ERS5 55 aa6.73□□□□□ -1.33
HIF3A-206ENST00000472815 A0A0D9SG42 100 aa6.69□□□□□ -1.34
HIF3A-206ENST00000472815 LORP23490 312 aaPredicted RBP6.67□□□□□ -1.34
HIF3A-206ENST00000472815 PMAIP1Q13794 54 aa6.65□□□□□ -1.34
HIF3A-206ENST00000472815 LINC01554Q52M75 96 aa6.64□□□□□ -1.35
HIF3A-206ENST00000472815 KRTAP10-10P60014 251 aa6.62□□□□□ -1.35
HIF3A-206ENST00000472815 A6NN06 94 aa6.62□□□□□ -1.35
HIF3A-206ENST00000472815 KRTAP9-8Q9BYQ0 159 aa6.62□□□□□ -1.35
HIF3A-206ENST00000472815 MT2AP02795 61 aa6.61□□□□□ -1.35
HIF3A-206ENST00000472815 SPINT4Q6UDR6 99 aa6.56□□□□□ -1.36
HIF3A-206ENST00000472815 MT1FP04733 61 aa6.56□□□□□ -1.36
HIF3A-206ENST00000472815 KRTAP12-1P59990 96 aa6.53□□□□□ -1.36
HIF3A-206ENST00000472815 SPRR2GQ9BYE4 73 aa6.53□□□□□ -1.36
HIF3A-206ENST00000472815 KTN1-AS1Q86SY8 53 aa6.51□□□□□ -1.37
HIF3A-206ENST00000472815 KRTAP12-2P59991 146 aa6.5□□□□□ -1.37
HIF3A-206ENST00000472815 KRTAP19-1Q8IUB9 90 aa6.45□□□□□ -1.38
HIF3A-206ENST00000472815 KRTAP9-2Q9BYQ4 174 aa6.44□□□□□ -1.38
HIF3A-206ENST00000472815 LCE2DQ5TA82 110 aaPredicted RBP6.42□□□□□ -1.38
HIF3A-206ENST00000472815 PLAC4Q8WY50 150 aa6.4□□□□□ -1.38
HIF3A-206ENST00000472815 CAMK2N1Q7Z7J9 78 aa6.39□□□□□ -1.39
HIF3A-206ENST00000472815 KRTAP9-3Q9BYQ3 159 aa6.38□□□□□ -1.39
HIF3A-206ENST00000472815 ROMO1P60602 79 aa6.35□□□□□ -1.39
HIF3A-206ENST00000472815 KRTAP19-8Q3LI54 63 aa6.34□□□□□ -1.39
HIF3A-206ENST00000472815 FSIP2Q5CZC0 6907 aa6.29□□□□□ -1.4
HIF3A-206ENST00000472815 LCE2BO14633 110 aa6.23□□□□□ -1.41
HIF3A-206ENST00000472815 MT1BP07438 61 aa6.21□□□□□ -1.42
HIF3A-206ENST00000472815 PRAC1Q96KF2 57 aa6.16□□□□□ -1.42
HIF3A-206ENST00000472815 C10orf95Q9H7T3 257 aa6.16□□□□□ -1.42
HIF3A-206ENST00000472815 KRTAP9-6A0A140TA67 174 aa6.16□□□□□ -1.42
HIF3A-206ENST00000472815 PRO2289Q9P1D8 64 aa6.11□□□□□ -1.43
HIF3A-206ENST00000472815 USH2AO75445 5202 aa6.11□□□□□ -1.43
HIF3A-206ENST00000472815 KRTAP25-1Q3LHN0 102 aa6.11□□□□□ -1.43
HIF3A-206ENST00000472815 CRCT1Q9UGL9 99 aa6.09□□□□□ -1.43
HIF3A-206ENST00000472815 TNP1P09430 55 aa6.08□□□□□ -1.44
HIF3A-206ENST00000472815 MT1XP80297 61 aa6.02□□□□□ -1.45
HIF3A-206ENST00000472815 KRTAP10-5P60370 271 aa6.02□□□□□ -1.45
HIF3A-206ENST00000472815 SSPOA2VEC9 5147 aa5.99□□□□□ -1.45
HIF3A-206ENST00000472815 KRTAP19-6Q3LI70 58 aa5.97□□□□□ -1.45
HIF3A-206ENST00000472815 PP632Q6XCG6 107 aa5.94□□□□□ -1.46
HIF3A-206ENST00000472815 KRTAP23-1A1A580 65 aa5.91□□□□□ -1.46
HIF3A-206ENST00000472815 FCGBPQ9Y6R7 5405 aaPredicted RBP5.8□□□□□ -1.48
HIF3A-206ENST00000472815 KRTAP10-12P60413 245 aa5.79□□□□□ -1.48
HIF3A-206ENST00000472815 KRTAP10-7P60409 375 aaPredicted RBP5.77□□□□□ -1.49
HIF3A-206ENST00000472815 LCE3AQ5TA76 89 aa5.72□□□□□ -1.49
HIF3A-206ENST00000472815 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.67□□□□□ -1.5
HIF3A-206ENST00000472815 MACF1Q9UPN3 7388 aaKnown RBP5.66□□□□□ -1.5
HIF3A-206ENST00000472815 KRTAP8-1Q8IUC2 63 aa5.64□□□□□ -1.51
HIF3A-206ENST00000472815 SYNE2Q8WXH0 6885 aaKnown RBP5.61□□□□□ -1.51
HIF3A-206ENST00000472815 KRTAP9-7A8MTY7 169 aa5.56□□□□□ -1.52
HIF3A-206ENST00000472815 KRTAP12-3P60328 96 aa5.54□□□□□ -1.52
HIF3A-206ENST00000472815 KRTAP4-8A0A0G2JLE6 195 aa5.51□□□□□ -1.53
HIF3A-206ENST00000472815 KRTAP4-8Q9BYQ9 185 aa5.51□□□□□ -1.53
HIF3A-206ENST00000472815 KRTAP19-5Q3LI72 72 aa5.45□□□□□ -1.54
HIF3A-206ENST00000472815 KMT2DO14686 5537 aa5.45□□□□□ -1.54
HIF3A-206ENST00000472815 KRTAP15-1Q3LI76 137 aa5.43□□□□□ -1.54
HIF3A-206ENST00000472815 KRTAP6-3Q3LI67 103 aa5.4□□□□□ -1.54
HIF3A-206ENST00000472815 KRTAP19-7Q3SYF9 63 aa5.37□□□□□ -1.55
HIF3A-206ENST00000472815 H3BS24 57 aa5.33□□□□□ -1.56
HIF3A-206ENST00000472815 KRTAP5-9P26371 169 aa5.33□□□□□ -1.56
HIF3A-206ENST00000472815 MT1EP04732 61 aa5.29□□□□□ -1.56
HIF3A-206ENST00000472815 KRTAP19-4Q3LI73 84 aa5.29□□□□□ -1.56
HIF3A-206ENST00000472815 SPRR2FQ96RM1 72 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms