RNA–Protein interactions for RNA: ENST00000469439.1

SYNE1-219, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 630 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-219ENST00000469439 OBSCNQ5VST9 7968 aa3.16□□□□□ -1.9
SYNE1-219ENST00000469439 NOTCH2NLQ7Z3S9 236 aa3.16□□□□□ -1.9
SYNE1-219ENST00000469439 OCR1Q9BZK8 76 aa3.16□□□□□ -1.9
SYNE1-219ENST00000469439 KIAA1109Q2LD37 5005 aa3.16□□□□□ -1.9
SYNE1-219ENST00000469439 KRTAP16-1A8MUX0 517 aa3.15□□□□□ -1.91
SYNE1-219ENST00000469439 H0Y9P7 68 aa3.15□□□□□ -1.91
SYNE1-219ENST00000469439 COX7CP15954 63 aa3.15□□□□□ -1.91
SYNE1-219ENST00000469439 C7orf65Q6ZTY9 151 aa3.15□□□□□ -1.91
SYNE1-219ENST00000469439 HERC2O95714 4834 aa3.13□□□□□ -1.91
SYNE1-219ENST00000469439 C1orf64Q8NEQ6 169 aa3.13□□□□□ -1.91
SYNE1-219ENST00000469439 LINC00208Q96KT6 92 aa3.12□□□□□ -1.91
SYNE1-219ENST00000469439 KLKP1Q107X0 134 aa3.11□□□□□ -1.91
SYNE1-219ENST00000469439 RBM12B-AS1Q9P1G2 102 aa3.11□□□□□ -1.91
SYNE1-219ENST00000469439 A0A0U1RQV1 116 aa3.1□□□□□ -1.91
SYNE1-219ENST00000469439 C20orf197Q8N268 126 aa3.1□□□□□ -1.91
SYNE1-219ENST00000469439 PKHD1L1Q86WI1 4243 aa3.09□□□□□ -1.91
SYNE1-219ENST00000469439 A8MUN3 132 aa3.09□□□□□ -1.91
SYNE1-219ENST00000469439 ATP5EP56381 51 aaPredicted RBP3.09□□□□□ -1.91
SYNE1-219ENST00000469439 Q5W150 140 aa3.09□□□□□ -1.91
SYNE1-219ENST00000469439 SPINK7P58062 85 aa3.08□□□□□ -1.92
SYNE1-219ENST00000469439 PCOTHQ58A44 107 aa3.08□□□□□ -1.92
SYNE1-219ENST00000469439 CYP4F30PQ9H0H9 118 aa3.08□□□□□ -1.92
SYNE1-219ENST00000469439 SPANXA2-OT1Q8N9U9 137 aa3.07□□□□□ -1.92
SYNE1-219ENST00000469439 MYCBP2O75592 4640 aa3.06□□□□□ -1.92
SYNE1-219ENST00000469439 LRP1Q07954 4544 aaKnown RBP3.05□□□□□ -1.92
SYNE1-219ENST00000469439 TNXBP22105 4242 aa3.05□□□□□ -1.92
SYNE1-219ENST00000469439 ACYP2P14621 99 aa3.05□□□□□ -1.92
SYNE1-219ENST00000469439 SPTSSBQ8NFR3 76 aa3.05□□□□□ -1.92
SYNE1-219ENST00000469439 FAM236DA0A1B0GTK5 79 aa3.04□□□□□ -1.92
SYNE1-219ENST00000469439 FAM236CP0DP71 79 aa3.04□□□□□ -1.92
SYNE1-219ENST00000469439 TMEM258P61165 79 aa3.04□□□□□ -1.92
SYNE1-219ENST00000469439 FAT3Q8TDW7 4589 aa3.03□□□□□ -1.92
SYNE1-219ENST00000469439 SNURFQ9Y675 71 aa3.03□□□□□ -1.92
SYNE1-219ENST00000469439 NDUFAF8A1L188 74 aa3.01□□□□□ -1.93
SYNE1-219ENST00000469439 COX6B2Q6YFQ2 88 aa3.01□□□□□ -1.93
SYNE1-219ENST00000469439 KRTAP4-3Q9BYR4 195 aa3.01□□□□□ -1.93
SYNE1-219ENST00000469439 ABCA13Q86UQ4 5058 aa3□□□□□ -1.93
SYNE1-219ENST00000469439 CHKB-CPT1BH3BT56 60 aa3□□□□□ -1.93
SYNE1-219ENST00000469439 CCDC179H3BU77 68 aa3□□□□□ -1.93
SYNE1-219ENST00000469439 HRES1P13985 223 aa3□□□□□ -1.93
SYNE1-219ENST00000469439 UBR4Q5T4S7 5183 aa3□□□□□ -1.93
SYNE1-219ENST00000469439 H7BZZ5 65 aa2.99□□□□□ -1.93
SYNE1-219ENST00000469439 H1FX-AS1Q4G0G2 97 aa2.99□□□□□ -1.93
SYNE1-219ENST00000469439 C4orf26Q17RF5 130 aa2.98□□□□□ -1.93
SYNE1-219ENST00000469439 LCE3EQ5T5B0 92 aa2.98□□□□□ -1.93
SYNE1-219ENST00000469439 DMAC1Q96GE9 116 aa2.98□□□□□ -1.93
SYNE1-219ENST00000469439 HERC1Q15751 4861 aa2.95□□□□□ -1.94
SYNE1-219ENST00000469439 CSAG1Q6PB30 78 aa2.94□□□□□ -1.94
SYNE1-219ENST00000469439 SERP1Q9Y6X1 66 aa2.94□□□□□ -1.94
SYNE1-219ENST00000469439 SEC61GP60059 68 aa2.93□□□□□ -1.94
SYNE1-219ENST00000469439 RPS28P62857 69 aaKnown RBP2.93□□□□□ -1.94
SYNE1-219ENST00000469439 S4R3F8 94 aa2.93□□□□□ -1.94
SYNE1-219ENST00000469439 V9GYY9 64 aa2.93□□□□□ -1.94
SYNE1-219ENST00000469439 LCE3AQ5TA76 89 aa2.91□□□□□ -1.94
SYNE1-219ENST00000469439 COA5Q86WW8 74 aa2.91□□□□□ -1.94
SYNE1-219ENST00000469439 PRR15LQ9BU68 103 aa2.9□□□□□ -1.95
SYNE1-219ENST00000469439 M0R2T5 61 aa2.89□□□□□ -1.95
SYNE1-219ENST00000469439 KRTAP12-2P59991 146 aa2.89□□□□□ -1.95
SYNE1-219ENST00000469439 SMIM26A0A096LP01 95 aa2.87□□□□□ -1.95
SYNE1-219ENST00000469439 CYSTM1Q9H1C7 97 aa2.87□□□□□ -1.95
SYNE1-219ENST00000469439 KRTAP4-1Q9BYQ7 146 aa2.86□□□□□ -1.95
SYNE1-219ENST00000469439 H0YAA0 97 aa2.85□□□□□ -1.95
SYNE1-219ENST00000469439 LCA10Q71F78 164 aa2.85□□□□□ -1.95
SYNE1-219ENST00000469439 KRTAP5-2Q701N4 177 aa2.84□□□□□ -1.95
SYNE1-219ENST00000469439 A0A1B0GU69 56 aa2.83□□□□□ -1.96
SYNE1-219ENST00000469439 LRP2P98164 4655 aa2.82□□□□□ -1.96
SYNE1-219ENST00000469439 LPAP08519 4548 aa2.82□□□□□ -1.96
SYNE1-219ENST00000469439 CRIPTQ9P021 101 aa2.81□□□□□ -1.96
SYNE1-219ENST00000469439 Q1T7F1 81 aa2.8□□□□□ -1.96
SYNE1-219ENST00000469439 LINC01558Q9Y6Z2 57 aa2.8□□□□□ -1.96
SYNE1-219ENST00000469439 HMCN2Q8NDA2 5059 aa2.79□□□□□ -1.96
SYNE1-219ENST00000469439 A8MU10 97 aa2.79□□□□□ -1.96
SYNE1-219ENST00000469439 MT1HP80294 61 aa2.78□□□□□ -1.96
SYNE1-219ENST00000469439 KRTAP19-2Q3LHN2 52 aa2.78□□□□□ -1.96
SYNE1-219ENST00000469439 M0QZ58 72 aa2.77□□□□□ -1.97
SYNE1-219ENST00000469439 MUC17Q685J3 4493 aa2.76□□□□□ -1.97
SYNE1-219ENST00000469439 UQCR11O14957 56 aa2.76□□□□□ -1.97
SYNE1-219ENST00000469439 ADM2Q7Z4H4 148 aa2.76□□□□□ -1.97
SYNE1-219ENST00000469439 A0A1B0GU33 70 aa2.75□□□□□ -1.97
SYNE1-219ENST00000469439 R4GN34 69 aa2.75□□□□□ -1.97
SYNE1-219ENST00000469439 K7ERS5 55 aa2.72□□□□□ -1.97
SYNE1-219ENST00000469439 KRTAP10-10P60014 251 aa2.72□□□□□ -1.97
SYNE1-219ENST00000469439 Q5VV11 94 aa2.72□□□□□ -1.97
SYNE1-219ENST00000469439 A6NED7 52 aa2.7□□□□□ -1.98
SYNE1-219ENST00000469439 KRTAP5-5Q701N2 237 aaPredicted RBP2.7□□□□□ -1.98
SYNE1-219ENST00000469439 RNF213Q63HN8 5207 aa2.69□□□□□ -1.98
SYNE1-219ENST00000469439 PSPHP1O15172 72 aa2.69□□□□□ -1.98
SYNE1-219ENST00000469439 MIR22HGQ0VDD5 57 aa2.67□□□□□ -1.98
SYNE1-219ENST00000469439 MUC2Q02817 5179 aa2.66□□□□□ -1.98
SYNE1-219ENST00000469439 A6NN06 94 aa2.66□□□□□ -1.98
SYNE1-219ENST00000469439 P0C880 135 aa2.66□□□□□ -1.98
SYNE1-219ENST00000469439 FLGP20930 4061 aaPredicted RBP2.65□□□□□ -1.98
SYNE1-219ENST00000469439 MT2AP02795 61 aa2.64□□□□□ -1.99
SYNE1-219ENST00000469439 PLAC4Q8WY50 150 aa2.64□□□□□ -1.99
SYNE1-219ENST00000469439 SPATA8Q6RVD6 105 aa2.63□□□□□ -1.99
SYNE1-219ENST00000469439 SPRR2GQ9BYE4 73 aa2.63□□□□□ -1.99
SYNE1-219ENST00000469439 LINC01554Q52M75 96 aa2.62□□□□□ -1.99
SYNE1-219ENST00000469439 CDC42SE1Q9NRR8 79 aa2.62□□□□□ -1.99
SYNE1-219ENST00000469439 MT1FP04733 61 aa2.6□□□□□ -1.99
SYNE1-219ENST00000469439 FAT4Q6V0I7 4981 aa2.58□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms